Wall clock time and date at job start Tue Mar 31 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35981 * 116.99849 * 2 1 4 4 C 1.38699 * 119.99719 * 179.97438 * 3 2 1 5 5 C 1.38134 * 120.00032 * 180.02562 * 4 3 2 6 6 C 1.38697 * 119.99798 * 359.97438 * 5 4 3 7 7 O 1.35985 * 119.99768 * 179.97438 * 6 5 4 8 8 C 1.42898 * 116.99933 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46982 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99928 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99409 * 179.97438 * 9 8 7 12 12 C 1.46509 * 119.99508 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46995 * 269.99871 * 12 11 9 14 14 H 1.07999 * 120.00036 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00492 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99658 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47339 * 60.00034 * 17 15 13 19 19 H 1.48497 * 109.46791 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46853 * 299.99789 * 17 15 13 21 21 C 1.40041 * 120.00491 * 0.02562 * 11 9 8 22 22 C 1.38818 * 120.07555 * 269.99866 * 21 11 9 23 23 C 1.38145 * 119.95024 * 179.97438 * 22 21 11 24 24 C 1.38278 * 120.11599 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.15499 * 359.97438 * 24 23 22 26 26 C 1.38316 * 120.04504 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.05374 * 180.02562 * 26 25 24 28 28 C 1.38697 * 119.99912 * 0.25396 * 6 5 4 29 29 C 1.38128 * 119.99963 * 359.49216 * 28 6 5 30 30 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47188 * 300.00312 * 1 2 3 32 32 H 1.09005 * 109.47060 * 60.00187 * 1 2 3 33 33 H 1.08005 * 120.00026 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.99976 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46942 * 59.99656 * 8 7 6 36 36 H 1.09001 * 109.46848 * 299.99673 * 8 7 6 37 37 H 1.09002 * 109.46868 * 30.00141 * 12 11 9 38 38 H 1.09002 * 109.46706 * 149.99833 * 12 11 9 39 39 H 0.96996 * 120.00287 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.02345 * 0.25605 * 22 21 11 41 41 H 1.07997 * 119.93787 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.92497 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.97649 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.99845 * 179.72401 * 28 6 5 45 45 H 1.08001 * 119.99746 * 180.22920 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4314 1.2842 0.0005 5 6 4.0586 2.5149 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8898 0.0016 8 6 3.0807 6.0459 0.0015 9 6 3.9349 7.2874 0.0034 10 8 5.1440 7.1915 0.0042 11 7 3.3553 8.5041 0.0031 12 6 4.1857 9.7111 0.0044 13 6 4.4689 10.1245 1.4257 14 1 4.0705 9.5458 2.2460 15 6 5.2374 11.2408 1.6788 16 7 5.7230 11.9452 0.6799 17 14 5.5890 11.7528 3.4405 18 1 6.3063 10.6572 4.1406 19 1 6.4307 12.9762 3.4417 20 1 4.3090 12.0325 4.1395 21 6 1.9592 8.6147 0.0017 22 6 1.2670 8.6700 -1.2003 23 6 -0.1102 8.7786 -1.1988 24 6 -0.8005 8.8328 -0.0018 25 6 -0.1156 8.7781 1.1981 26 6 1.2632 8.6683 1.2041 27 9 1.9325 8.6142 2.3765 28 6 1.9181 3.6055 0.0048 29 6 1.2911 2.3748 -0.0011 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0197 0.3784 0.0005 34 1 5.1371 2.5714 0.0019 35 1 2.4507 6.0373 0.8910 36 1 2.4521 6.0382 -0.8890 37 1 5.1254 9.5060 -0.5085 38 1 3.6590 10.5150 -0.5098 39 1 6.2640 12.7303 0.8580 40 1 1.8044 8.6237 -2.1360 41 1 -0.6484 8.8221 -2.1340 42 1 -1.8771 8.9181 -0.0042 43 1 -0.6577 8.8202 2.1312 44 1 1.3299 4.5113 0.0089 45 1 0.2125 2.3183 -0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003236289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:04 Heat of formation + Delta-G solvation = -83.829463 kcal Electronic energy + Delta-G solvation = -31750.472779 eV Core-core repulsion = 27228.178590 eV Total energy + Delta-G solvation = -4522.294189 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.48825 -40.61344 -39.90328 -38.99430 -38.08378 -36.33657 -34.98984 -32.74788 -31.37425 -30.59743 -30.05816 -29.53717 -28.59304 -27.30241 -26.50048 -23.30370 -23.10106 -22.51760 -22.39895 -21.83605 -19.37996 -18.64856 -17.80965 -17.57920 -17.02107 -16.83639 -16.23880 -16.12143 -15.92692 -15.80578 -15.62735 -14.98221 -14.97254 -14.85808 -14.47915 -14.12273 -14.00645 -13.83340 -13.62568 -13.30332 -13.05482 -12.96392 -12.69338 -12.53400 -12.24543 -12.18466 -11.95358 -11.85326 -11.63049 -11.44305 -11.21112 -10.92912 -10.89225 -10.64275 -10.53832 -10.19312 -9.72456 -9.46669 -9.23377 -8.85988 -8.47911 -8.40352 -8.08531 -7.85103 -6.06738 -4.10475 1.10040 1.15267 1.23472 1.33974 2.81153 3.05830 3.10186 3.33785 3.36953 3.41973 3.57610 3.59721 3.86313 4.41197 4.45190 4.52240 4.61801 4.72436 4.82222 4.84877 4.86165 4.93316 4.95952 5.08662 5.16246 5.17314 5.24195 5.29011 5.30174 5.34681 5.37570 5.68680 5.73984 5.88700 6.06612 6.10785 6.13420 6.19835 6.34135 6.36056 6.41961 6.72582 7.00075 7.11910 7.21358 7.34351 7.42183 7.90803 8.12977 8.15991 8.71445 8.95009 9.54403 11.02118 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.002880 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.564874 B = 9720.500586 C =11024.281249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.083 3.917 4 C -0.110 4.110 5 C -0.110 4.110 6 C 0.102 3.898 7 O -0.286 6.286 8 C 0.044 3.956 9 C 0.519 3.481 10 O -0.499 6.499 11 N -0.557 5.557 12 C 0.251 3.749 13 C -0.530 4.530 14 H 0.066 0.934 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.109 3.891 22 C -0.094 4.094 23 C -0.128 4.128 24 C -0.095 4.095 25 C -0.155 4.155 26 C 0.112 3.888 27 F -0.121 7.121 28 C -0.172 4.172 29 C -0.166 4.166 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 -17.138 -4.314 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.038 3.962 4 C -0.129 4.129 5 C -0.128 4.128 6 C 0.056 3.944 7 O -0.198 6.198 8 C -0.035 4.035 9 C 0.304 3.696 10 O -0.372 6.372 11 N -0.289 5.289 12 C 0.134 3.866 13 C -0.568 4.568 14 H 0.084 0.916 15 C -0.139 4.139 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.017 3.983 22 C -0.114 4.114 23 C -0.147 4.147 24 C -0.113 4.113 25 C -0.174 4.174 26 C 0.091 3.909 27 F -0.099 7.099 28 C -0.191 4.191 29 C -0.185 4.185 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.221 -17.153 -4.311 23.999 hybrid contribution -0.322 0.823 1.262 1.541 sum -16.544 -16.330 -3.049 23.445 Atomic orbital electron populations 1.23015 0.78714 1.03727 1.01253 1.86063 1.21075 1.26787 1.89475 1.18882 0.92311 0.84131 1.00843 1.20218 0.91284 0.97770 1.03579 1.20295 1.00633 0.88802 1.03093 1.19027 0.91029 0.85734 0.98622 1.86202 1.34056 1.11033 1.88505 1.22571 0.93362 0.84546 1.03010 1.19723 0.88521 0.83385 0.77945 1.90741 1.13795 1.85657 1.47028 1.45796 1.02767 1.07745 1.72588 1.19512 0.90168 0.78516 0.98367 1.21456 1.32461 1.10813 0.92106 0.91631 1.24897 0.95324 0.96136 0.97514 1.69915 1.34850 1.17836 1.30847 0.86548 0.78334 0.77910 0.84650 1.20032 1.21159 1.20186 1.17817 0.84896 1.03773 0.91839 1.21390 0.94340 0.98419 0.97209 1.21049 0.93546 1.01648 0.98426 1.20986 1.00040 0.98763 0.91475 1.21113 0.91927 1.04372 1.00014 1.18174 0.90073 1.01008 0.81632 1.91565 1.80532 1.93039 1.44737 1.21089 0.93387 0.98541 1.06073 1.20988 0.99900 0.91604 1.05978 0.88416 0.92778 0.92795 0.84482 0.84086 0.89784 0.89542 0.93020 0.94509 0.92615 0.84731 0.85187 0.85133 0.84659 0.85128 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.27 10.50 -19.68 -0.21 -3.47 16 3 C 0.08 0.93 6.68 -39.24 -0.26 0.67 16 4 C -0.11 -1.24 9.98 -39.45 -0.39 -1.63 16 5 C -0.11 -1.39 9.98 -39.45 -0.39 -1.79 16 6 C 0.10 1.45 6.69 -39.24 -0.26 1.19 16 7 O -0.29 -4.96 9.67 -39.60 -0.38 -5.35 16 8 C 0.04 0.72 4.03 36.01 0.15 0.86 16 9 C 0.52 11.13 7.72 -10.99 -0.08 11.05 16 10 O -0.50 -12.97 16.08 -14.36 -0.23 -13.20 16 11 N -0.56 -11.92 2.33 -114.66 -0.27 -12.19 16 12 C 0.25 6.55 5.15 -5.19 -0.03 6.52 16 13 C -0.53 -15.14 9.34 -34.44 -0.32 -15.47 16 14 H 0.07 1.90 6.42 -52.49 -0.34 1.56 16 15 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 17 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 18 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.11 1.88 3.93 -83.59 -0.33 1.56 16 22 C -0.09 -1.26 9.97 -39.40 -0.39 -1.65 16 23 C -0.13 -1.32 10.04 -39.60 -0.40 -1.71 16 24 C -0.09 -0.94 10.04 -39.56 -0.40 -1.34 16 25 C -0.15 -1.92 10.02 -39.54 -0.40 -2.32 16 26 C 0.11 1.87 7.31 -39.25 -0.29 1.59 16 27 F -0.12 -2.40 15.68 2.25 0.04 -2.36 16 28 C -0.17 -2.07 9.03 -39.45 -0.36 -2.42 16 29 C -0.17 -1.75 9.03 -39.45 -0.36 -2.11 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 33 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.08 1.26 7.61 -51.93 -0.39 0.87 16 36 H 0.09 1.15 7.63 -51.93 -0.40 0.75 16 37 H 0.05 1.50 7.42 -51.93 -0.39 1.11 16 38 H 0.04 0.97 8.05 -51.93 -0.42 0.55 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.13 1.38 6.29 -52.49 -0.33 1.05 16 45 H 0.13 1.03 6.29 -52.49 -0.33 0.70 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -35.40 392.45 -8.52 -43.93 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.48 Total: -0.60 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.62 Total: -4.11 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.47 Total: -38.09 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.82 Total: -22.02 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.40 -8.52 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003236289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.903 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds