Wall clock time and date at job start Tue Mar 31 2020 05:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35981 * 116.99849 * 2 1 4 4 C 1.38699 * 119.99719 * 179.97438 * 3 2 1 5 5 C 1.38134 * 120.00032 * 180.02562 * 4 3 2 6 6 C 1.38697 * 119.99798 * 359.97438 * 5 4 3 7 7 O 1.35985 * 119.99768 * 179.97438 * 6 5 4 8 8 C 1.42898 * 116.99933 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46982 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99928 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99409 * 179.97438 * 9 8 7 12 12 C 1.46509 * 119.99508 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46995 * 269.99871 * 12 11 9 14 14 H 1.07999 * 120.00036 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00492 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99658 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47339 * 60.00034 * 17 15 13 19 19 H 1.48497 * 109.46791 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46853 * 299.99789 * 17 15 13 21 21 C 1.40041 * 120.00491 * 0.02562 * 11 9 8 22 22 C 1.38818 * 120.07555 * 269.99866 * 21 11 9 23 23 C 1.38145 * 119.95024 * 179.97438 * 22 21 11 24 24 C 1.38278 * 120.11599 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.15499 * 359.97438 * 24 23 22 26 26 C 1.38316 * 120.04504 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.05374 * 180.02562 * 26 25 24 28 28 C 1.38697 * 119.99912 * 0.25396 * 6 5 4 29 29 C 1.38128 * 119.99963 * 359.49216 * 28 6 5 30 30 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47188 * 300.00312 * 1 2 3 32 32 H 1.09005 * 109.47060 * 60.00187 * 1 2 3 33 33 H 1.08005 * 120.00026 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.99976 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46942 * 59.99656 * 8 7 6 36 36 H 1.09001 * 109.46848 * 299.99673 * 8 7 6 37 37 H 1.09002 * 109.46868 * 30.00141 * 12 11 9 38 38 H 1.09002 * 109.46706 * 149.99833 * 12 11 9 39 39 H 0.96996 * 120.00287 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.02345 * 0.25605 * 22 21 11 41 41 H 1.07997 * 119.93787 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.92497 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.97649 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.99845 * 179.72401 * 28 6 5 45 45 H 1.08001 * 119.99746 * 180.22920 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4314 1.2842 0.0005 5 6 4.0586 2.5149 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8898 0.0016 8 6 3.0807 6.0459 0.0015 9 6 3.9349 7.2874 0.0034 10 8 5.1440 7.1915 0.0042 11 7 3.3553 8.5041 0.0031 12 6 4.1857 9.7111 0.0044 13 6 4.4689 10.1245 1.4257 14 1 4.0705 9.5458 2.2460 15 6 5.2374 11.2408 1.6788 16 7 5.7230 11.9452 0.6799 17 14 5.5890 11.7528 3.4405 18 1 6.3063 10.6572 4.1406 19 1 6.4307 12.9762 3.4417 20 1 4.3090 12.0325 4.1395 21 6 1.9592 8.6147 0.0017 22 6 1.2670 8.6700 -1.2003 23 6 -0.1102 8.7786 -1.1988 24 6 -0.8005 8.8328 -0.0018 25 6 -0.1156 8.7781 1.1981 26 6 1.2632 8.6683 1.2041 27 9 1.9325 8.6142 2.3765 28 6 1.9181 3.6055 0.0048 29 6 1.2911 2.3748 -0.0011 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0197 0.3784 0.0005 34 1 5.1371 2.5714 0.0019 35 1 2.4507 6.0373 0.8910 36 1 2.4521 6.0382 -0.8890 37 1 5.1254 9.5060 -0.5085 38 1 3.6590 10.5150 -0.5098 39 1 6.2640 12.7303 0.8580 40 1 1.8044 8.6237 -2.1360 41 1 -0.6484 8.8221 -2.1340 42 1 -1.8771 8.9181 -0.0042 43 1 -0.6577 8.8202 2.1312 44 1 1.3299 4.5113 0.0089 45 1 0.2125 2.3183 -0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003236289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:03 Heat of formation + Delta-G solvation = -104.803752 kcal Electronic energy + Delta-G solvation = -31751.382292 eV Core-core repulsion = 27228.178590 eV Total energy + Delta-G solvation = -4523.203703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.81980 -41.75240 -41.11083 -39.99299 -39.36208 -37.32145 -36.62434 -34.85672 -32.27114 -31.63122 -31.32369 -30.76420 -29.82964 -28.32398 -27.85278 -25.06843 -24.24647 -23.62970 -23.46726 -22.84333 -20.80718 -19.62896 -18.87884 -18.83538 -18.73743 -18.12108 -17.57776 -17.42164 -17.18683 -17.04289 -16.56003 -16.45228 -16.16688 -15.98219 -15.78878 -15.45205 -15.23572 -14.97366 -14.68744 -14.40998 -14.34511 -14.15061 -14.08415 -13.59190 -13.56382 -13.43139 -13.27067 -13.05377 -12.83164 -12.67678 -12.64103 -12.55527 -12.30625 -12.18782 -11.77934 -11.72835 -11.45631 -11.08315 -10.69375 -10.11609 -9.92170 -9.89037 -9.58964 -8.78869 -8.28553 -6.40707 0.09830 0.22307 0.24341 0.40676 1.30063 1.34945 1.37093 1.44849 1.52419 2.32309 2.39844 2.53853 2.61929 2.69097 3.02141 3.27702 3.35933 3.73180 3.77703 3.85769 3.87436 3.93205 4.12836 4.15499 4.32116 4.39089 4.41178 4.43412 4.45596 4.50391 4.59742 4.78372 4.86436 4.92234 5.00447 5.05604 5.11076 5.22117 5.23798 5.28825 5.34866 5.40490 5.45592 5.53317 5.69429 5.90806 5.97280 6.20160 6.46494 6.52406 6.66670 7.08184 7.29637 8.79813 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.002880 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.564874 B = 9720.500586 C =11024.281249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.084 3.916 4 C -0.115 4.115 5 C -0.121 4.121 6 C 0.068 3.932 7 O -0.320 6.320 8 C 0.065 3.935 9 C 0.507 3.493 10 O -0.564 6.564 11 N -0.555 5.555 12 C 0.268 3.732 13 C -0.544 4.544 14 H 0.055 0.945 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.961 3.039 18 H -0.279 1.279 19 H -0.272 1.272 20 H -0.264 1.264 21 C 0.068 3.932 22 C -0.098 4.098 23 C -0.107 4.107 24 C -0.072 4.072 25 C -0.147 4.147 26 C 0.075 3.925 27 F -0.152 7.152 28 C -0.169 4.169 29 C -0.162 4.162 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.154 0.846 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.009 0.991 38 H 0.028 0.972 39 H 0.268 0.732 40 H 0.138 0.862 41 H 0.174 0.826 42 H 0.180 0.820 43 H 0.157 0.843 44 H 0.147 0.853 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.299 -18.160 -4.429 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.039 3.961 4 C -0.133 4.133 5 C -0.140 4.140 6 C 0.023 3.977 7 O -0.234 6.234 8 C -0.013 4.013 9 C 0.296 3.704 10 O -0.442 6.442 11 N -0.285 5.285 12 C 0.149 3.851 13 C -0.582 4.582 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.785 3.215 18 H -0.205 1.205 19 H -0.197 1.197 20 H -0.188 1.188 21 C -0.023 4.023 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.089 4.089 25 C -0.166 4.166 26 C 0.054 3.946 27 F -0.131 7.131 28 C -0.188 4.188 29 C -0.180 4.180 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.171 0.829 34 H 0.156 0.844 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.027 0.973 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.191 0.809 42 H 0.197 0.803 43 H 0.175 0.825 44 H 0.164 0.836 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.204 -18.193 -4.434 28.289 hybrid contribution 1.006 1.029 1.210 1.880 sum -20.197 -17.164 -3.224 26.701 Atomic orbital electron populations 1.23352 0.76527 1.05596 1.02287 1.86061 1.23366 1.26167 1.89137 1.19053 0.92404 0.84951 0.99710 1.20403 0.92037 0.97637 1.03261 1.20420 1.00765 0.89233 1.03587 1.19312 0.92414 0.84672 1.01261 1.86141 1.35501 1.12196 1.89518 1.22344 0.91891 0.82033 1.05045 1.20716 0.88398 0.84953 0.76337 1.90687 1.16644 1.86773 1.50097 1.45518 1.04816 1.06346 1.71803 1.18903 0.89249 0.80313 0.96656 1.21683 1.32674 1.10983 0.92873 0.92648 1.25767 0.95006 0.96151 1.01801 1.70020 1.35332 1.18262 1.32858 0.85564 0.78698 0.77655 0.79533 1.20461 1.19709 1.18818 1.18160 0.82499 1.07802 0.93844 1.21542 0.95991 0.98425 0.95775 1.21539 0.91866 0.98496 1.00595 1.21569 1.02214 0.95218 0.89918 1.21449 0.89874 1.02949 1.02342 1.18632 0.91810 1.03792 0.80329 1.91475 1.81522 1.93705 1.46363 1.21272 0.92347 0.99900 1.05271 1.21292 1.01440 0.90595 1.04679 0.86357 0.91796 0.91571 0.82867 0.84436 0.88452 0.86207 0.97322 0.95433 0.92268 0.84390 0.80894 0.80298 0.82510 0.83583 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.97 10.50 -93.34 -0.98 -6.95 16 3 C 0.08 1.72 6.68 22.49 0.15 1.87 16 4 C -0.11 -2.52 9.98 22.36 0.22 -2.30 16 5 C -0.12 -3.19 9.98 22.35 0.22 -2.97 16 6 C 0.07 1.97 6.69 22.49 0.15 2.12 16 7 O -0.32 -11.72 9.67 -74.35 -0.72 -12.43 16 8 C 0.07 2.19 4.03 71.24 0.29 2.48 16 9 C 0.51 23.40 7.72 87.66 0.68 24.07 16 10 O -0.56 -32.08 16.08 15.98 0.26 -31.82 16 11 N -0.56 -25.28 2.33 -635.05 -1.48 -26.75 16 12 C 0.27 15.06 5.15 85.63 0.44 15.51 16 13 C -0.54 -32.86 9.34 25.60 0.24 -32.62 16 14 H 0.06 3.39 6.42 -2.91 -0.02 3.38 16 15 C 0.01 0.72 5.46 84.65 0.46 1.18 16 16 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 17 Si 0.96 47.08 29.54 68.60 2.03 49.11 16 18 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.07 2.37 3.93 38.16 0.15 2.52 16 22 C -0.10 -2.45 9.97 22.39 0.22 -2.23 16 23 C -0.11 -1.66 10.04 22.26 0.22 -1.44 16 24 C -0.07 -1.02 10.04 22.29 0.22 -0.79 16 25 C -0.15 -3.18 10.02 22.30 0.22 -2.96 16 26 C 0.07 2.48 7.31 22.48 0.16 2.64 16 27 F -0.15 -6.29 15.68 44.97 0.71 -5.58 16 28 C -0.17 -3.80 9.03 22.35 0.20 -3.60 16 29 C -0.16 -2.98 9.03 22.35 0.20 -2.77 16 30 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.47 7.66 -2.39 -0.02 0.46 16 32 H 0.07 0.46 7.66 -2.38 -0.02 0.44 16 33 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.10 2.98 7.61 -2.39 -0.02 2.96 16 36 H 0.12 3.12 7.63 -2.39 -0.02 3.10 16 37 H 0.01 0.55 7.42 -2.39 -0.02 0.54 16 38 H 0.03 1.57 8.05 -2.39 -0.02 1.55 16 39 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.15 2.71 6.29 -2.91 -0.02 2.69 16 45 H 0.16 1.87 6.29 -2.91 -0.02 1.85 16 Total: -1.00 -85.95 392.45 6.70 -79.25 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.02 Total: 10.04 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.58 Total: 1.98 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -1.19 Total: -83.60 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -1.44 Total: -51.20 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.71 Total: -5.58 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -85.95 6.70 -79.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003236289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.554 kcal (2) G-P(sol) polarization free energy of solvation -85.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds