Wall clock time and date at job start Tue Mar 31 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00484 * 2 1 4 4 C 1.50701 * 109.46817 * 270.00132 * 3 2 1 5 5 H 1.07991 * 120.00033 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99398 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99442 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00603 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46908 * 89.99886 * 8 6 4 10 10 H 1.48497 * 109.47639 * 210.00038 * 8 6 4 11 11 H 1.48496 * 109.46987 * 330.00514 * 8 6 4 12 12 C 1.34783 * 119.99699 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99875 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99845 * 0.02562 * 12 2 1 15 15 O 1.45204 * 109.46810 * 179.97438 * 14 12 2 16 16 C 1.34765 * 116.99936 * 180.02562 * 15 14 12 17 17 O 1.21532 * 120.00108 * 359.97438 * 16 15 14 18 18 C 1.47293 * 120.00292 * 180.02562 * 16 15 14 19 19 C 1.39839 * 120.19943 * 5.88506 * 18 16 15 20 20 C 1.37811 * 119.92256 * 180.30545 * 19 18 16 21 21 Cl 1.73604 * 119.82462 * 179.72709 * 20 19 18 22 22 C 1.38723 * 120.34876 * 359.70646 * 20 19 18 23 23 C 1.38033 * 120.40578 * 359.97438 * 22 20 19 24 24 Cl 1.73601 * 119.96340 * 180.02562 * 23 22 20 25 25 C 1.39048 * 120.06800 * 0.02562 * 23 22 20 26 26 N 1.38954 * 120.17352 * 179.97438 * 25 23 22 27 27 H 1.09001 * 109.47022 * 270.00156 * 1 2 3 28 28 H 1.08999 * 109.47103 * 29.99671 * 1 2 3 29 29 H 1.09000 * 109.47627 * 150.00108 * 1 2 3 30 30 H 1.09001 * 109.46984 * 29.99970 * 3 2 1 31 31 H 1.08996 * 109.46822 * 149.99720 * 3 2 1 32 32 H 0.97005 * 119.99508 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47311 * 59.99603 * 14 12 2 34 34 H 1.09002 * 109.47210 * 299.99202 * 14 12 2 35 35 H 1.07996 * 120.03936 * 0.03796 * 19 18 16 36 36 H 1.07991 * 119.79408 * 180.02562 * 22 20 19 37 37 H 0.97001 * 119.99951 * 24.90569 * 26 25 23 38 38 H 0.97002 * 119.99914 * 204.90608 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0974 1.0961 -2.2416 6 6 3.1261 2.8778 -1.6727 7 7 3.3449 3.2577 -2.9127 8 14 3.7319 3.9297 -0.2530 9 1 5.1053 3.5089 0.1240 10 1 3.7470 5.3563 -0.6650 11 1 2.8253 3.7601 0.9108 12 6 2.1388 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3852 -2.4723 0.0005 15 8 2.3288 -3.5760 0.0005 16 6 1.8136 -4.8213 0.0000 17 8 0.6088 -4.9805 0.0000 18 6 2.7108 -5.9895 0.0005 19 6 4.0926 -5.8151 0.1255 20 6 4.9273 -6.9117 0.1190 21 17 6.6429 -6.6918 0.2672 22 6 4.4037 -8.1903 -0.0049 23 6 3.0414 -8.3790 -0.1226 24 17 2.3985 -9.9843 -0.2763 25 6 2.1835 -7.2848 -0.1180 26 7 0.8118 -7.4722 -0.2368 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1382 0.5139 32 1 3.8218 4.0836 -3.0900 33 1 0.7588 -2.5302 -0.8896 34 1 0.7583 -2.5299 0.8904 35 1 4.5056 -4.8220 0.2227 36 1 5.0659 -9.0433 -0.0086 37 1 0.4121 -8.3138 0.0329 38 1 0.2539 -6.7613 -0.5895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003283892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:20 Heat of formation + Delta-G solvation = -91.580928 kcal Electronic energy + Delta-G solvation = -26512.942933 eV Core-core repulsion = 22214.957134 eV Total energy + Delta-G solvation = -4297.985798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.048 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08787 -39.69219 -38.85502 -37.16731 -36.86569 -36.37913 -35.03678 -34.69034 -32.63289 -31.91273 -29.72143 -29.06369 -27.67581 -25.94857 -24.77848 -22.98559 -22.31574 -21.37719 -18.98385 -18.52751 -17.64658 -17.55586 -17.12776 -17.05133 -16.62039 -16.33547 -15.65095 -15.35679 -15.08640 -14.99119 -14.85343 -14.31407 -14.03526 -13.53876 -13.17996 -13.07714 -12.76525 -12.54712 -12.44011 -12.40337 -12.34989 -12.11554 -11.87500 -11.61850 -11.55385 -11.25392 -11.05383 -10.82047 -10.80659 -10.57479 -10.49875 -10.19768 -9.60345 -9.50130 -9.19057 -8.63023 -8.14148 -7.85927 -6.12751 -4.12523 0.15529 0.71981 1.42172 1.95570 2.08145 2.27663 3.08417 3.13058 3.26765 3.32292 3.32603 3.34685 3.68054 4.19483 4.35911 4.49568 4.59792 4.64688 4.75061 4.93240 5.09932 5.11400 5.20458 5.20582 5.42816 5.48509 5.63835 5.73338 5.88084 6.05732 6.11203 6.58680 6.82856 6.85055 7.16683 7.31332 7.49014 7.54399 8.03505 8.40211 8.74768 8.90223 9.46481 11.00470 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.002254 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.720593 B =12416.680722 C =13860.648031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.592 5.592 3 C 0.217 3.783 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.516 6.516 14 C 0.053 3.947 15 O -0.320 6.320 16 C 0.525 3.475 17 O -0.516 6.516 18 C -0.186 4.186 19 C 0.006 3.994 20 C -0.097 4.097 21 Cl -0.054 7.054 22 C -0.018 4.018 23 C -0.119 4.119 24 Cl -0.052 7.052 25 C 0.295 3.705 26 N -0.846 5.846 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.402 0.598 38 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 -25.632 8.034 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.326 5.326 3 C 0.097 3.903 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.292 3.708 13 O -0.392 6.392 14 C -0.024 4.024 15 O -0.234 6.234 16 C 0.371 3.629 17 O -0.407 6.407 18 C -0.193 4.193 19 C -0.013 4.013 20 C -0.126 4.126 21 Cl -0.025 7.025 22 C -0.038 4.038 23 C -0.150 4.150 24 Cl -0.023 7.023 25 C 0.182 3.818 26 N -0.390 5.390 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.233 0.767 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.890 -25.538 7.907 27.016 hybrid contribution -0.172 0.492 0.472 0.703 sum -4.062 -25.047 8.379 26.722 Atomic orbital electron populations 1.21767 0.80565 1.03409 1.00884 1.47758 1.06467 1.06544 1.71853 1.19735 0.92540 0.79389 0.98627 1.21297 1.37346 1.07307 0.91127 0.90697 1.24859 0.95154 0.97327 0.95637 1.69899 1.41235 1.23559 1.18674 0.86842 0.80196 0.79787 0.82816 1.19800 1.21016 1.19046 1.19694 0.88155 0.84242 0.78687 1.90727 1.13297 1.86687 1.48442 1.22939 0.90960 0.83924 1.04564 1.86606 1.39709 1.13830 1.83289 1.20629 0.86599 0.83210 0.72450 1.90641 1.15988 1.86216 1.47892 1.18340 0.92973 0.89345 1.18608 1.21435 0.90738 0.99952 0.89170 1.20294 0.86284 0.93572 1.12407 1.98395 1.10088 1.97375 1.96634 1.20928 0.92950 0.96815 0.93101 1.20086 0.92556 0.85814 1.16565 1.98367 1.86445 1.20813 1.96713 1.17269 0.85450 0.90246 0.88806 1.43019 1.04030 1.21962 1.70017 0.93164 0.89973 0.92148 0.94808 0.94299 0.92472 0.88188 0.88421 0.82152 0.83295 0.76736 0.74251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.24 59.84 0.61 1.71 16 2 N -0.59 -11.68 2.86 -182.95 -0.52 -12.20 16 3 C 0.22 5.15 4.23 -5.19 -0.02 5.13 16 4 C -0.53 -14.99 9.94 -34.44 -0.34 -15.33 16 5 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 8 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 12 C 0.51 10.05 7.75 -10.98 -0.09 9.97 16 13 O -0.52 -12.51 16.08 -14.11 -0.23 -12.73 16 14 C 0.05 0.79 4.51 36.00 0.16 0.95 16 15 O -0.32 -4.89 9.02 -47.35 -0.43 -5.31 16 16 C 0.52 6.89 7.87 34.41 0.27 7.16 16 17 O -0.52 -6.78 13.60 -19.29 -0.26 -7.04 16 18 C -0.19 -2.10 5.89 -104.82 -0.62 -2.72 16 19 C 0.01 0.07 9.38 -39.14 -0.37 -0.30 16 20 C -0.10 -0.93 6.31 -39.56 -0.25 -1.18 16 21 Cl -0.05 -0.52 28.94 -51.86 -1.50 -2.02 16 22 C -0.02 -0.15 9.58 -39.48 -0.38 -0.52 16 23 C -0.12 -1.02 6.33 -39.36 -0.25 -1.26 16 24 Cl -0.05 -0.38 27.77 -51.86 -1.44 -1.82 16 25 C 0.30 2.87 6.76 -83.54 -0.56 2.31 16 26 N -0.85 -7.09 8.31 32.58 0.27 -6.82 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 30 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 31 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.10 1.31 7.40 -51.93 -0.38 0.93 16 34 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.16 1.86 7.62 -52.49 -0.40 1.46 16 36 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.40 2.60 7.88 -40.82 -0.32 2.28 16 38 H 0.42 3.84 6.11 -40.82 -0.25 3.59 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -33.71 361.20 -8.18 -41.89 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.69 Total: 2.74 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -1.93 Total: 7.90 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.52 Total: -45.54 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.92 Total: -25.09 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -2.94 Total: -3.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.71 -8.18 -41.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003283892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.695 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds