Wall clock time and date at job start Tue Mar 31 2020 06:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99585 * 2 1 4 4 H 1.48499 * 109.47461 * 269.99945 * 3 2 1 5 5 H 1.48503 * 109.47441 * 30.00405 * 3 2 1 6 6 H 1.48503 * 109.47056 * 150.00013 * 3 2 1 7 7 C 1.37875 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99699 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00106 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00189 * 90.00215 * 10 9 7 12 12 O 1.21285 * 120.00138 * 175.26526 * 11 10 9 13 13 C 1.50701 * 119.99742 * 355.26046 * 11 10 9 14 14 N 1.46501 * 109.47107 * 180.02562 * 13 11 10 15 15 C 1.39321 * 120.00092 * 180.02562 * 14 13 11 16 16 C 1.37881 * 120.30384 * 359.97438 * 15 14 13 17 17 C 1.39140 * 120.74516 * 179.97438 * 16 15 14 18 18 C 1.36176 * 121.09262 * 0.06875 * 17 16 15 19 19 C 1.40516 * 119.95913 * 359.94952 * 18 17 16 20 20 C 1.40579 * 121.20356 * 180.02562 * 19 18 17 21 21 C 1.36103 * 119.66304 * 179.97438 * 20 19 18 22 22 C 1.39341 * 120.97345 * 359.97438 * 21 20 19 23 23 C 1.36160 * 120.96370 * 0.02562 * 22 21 20 24 24 C 1.40359 * 119.66999 * 359.95565 * 23 22 21 25 25 C 1.39919 * 120.00001 * 269.99617 * 10 9 7 26 26 C 1.38876 * 120.07043 * 111.85042 * 25 10 9 27 27 C 1.38108 * 119.93092 * 179.79393 * 26 25 10 28 28 C 1.38285 * 120.06829 * 0.48309 * 27 26 25 29 29 C 1.38275 * 120.14561 * 359.75005 * 28 27 26 30 30 C 1.38117 * 120.06792 * 0.02562 * 29 28 27 31 31 H 0.97000 * 120.00109 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47245 * 59.99712 * 9 7 2 33 33 H 1.09001 * 109.46894 * 299.99641 * 9 7 2 34 34 H 1.09000 * 109.47101 * 60.00743 * 13 11 10 35 35 H 1.08998 * 109.47396 * 300.00314 * 13 11 10 36 36 H 0.96998 * 119.99882 * 0.02562 * 14 13 11 37 37 H 1.08004 * 119.62629 * 0.04599 * 16 15 14 38 38 H 1.07999 * 119.45707 * 180.02562 * 17 16 15 39 39 H 1.07998 * 120.02167 * 180.22799 * 18 17 16 40 40 H 1.07999 * 120.16646 * 359.96589 * 20 19 18 41 41 H 1.08000 * 119.50990 * 179.97438 * 21 20 19 42 42 H 1.08005 * 119.52232 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.16406 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.03311 * 0.02706 * 26 25 10 45 45 H 1.08002 * 119.96873 * 180.23155 * 27 26 25 46 46 H 1.08004 * 119.92737 * 179.72496 * 28 27 26 47 47 H 1.07995 * 119.96929 * 180.02562 * 29 28 27 48 48 H 1.08002 * 120.03877 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6402 -4.1254 1.1658 12 8 3.3605 -5.1012 1.1677 13 6 2.2340 -3.4861 2.4687 14 7 2.8349 -4.2236 3.5828 15 6 2.6003 -3.8170 4.8945 16 6 1.8039 -2.7212 5.1513 17 6 1.5630 -2.3074 6.4578 18 6 2.1060 -2.9696 7.5166 19 6 2.9237 -4.0912 7.2982 20 6 3.4972 -4.7946 8.3719 21 6 4.2840 -5.8772 8.1243 22 6 4.5307 -6.3012 6.8202 23 6 3.9919 -5.6443 5.7562 24 6 3.1750 -4.5237 5.9727 25 6 2.6587 -4.1438 -1.2131 26 6 3.9847 -3.9776 -1.5910 27 6 4.4323 -4.5068 -2.7856 28 6 3.5592 -5.1931 -3.6097 29 6 2.2372 -5.3562 -3.2386 30 6 1.7845 -4.8333 -2.0431 31 1 -0.4850 0.8400 0.0004 32 1 0.6248 -2.5563 -0.8920 33 1 0.6242 -2.5575 0.8880 34 1 1.1481 -3.5086 2.5614 35 1 2.5791 -2.4524 2.4894 36 1 3.3962 -4.9950 3.4071 37 1 1.3611 -2.1785 4.3291 38 1 0.9356 -1.4464 6.6350 39 1 1.9045 -2.6356 8.5237 40 1 3.3144 -4.4773 9.3879 41 1 4.7237 -6.4154 8.9510 42 1 5.1591 -7.1632 6.6507 43 1 4.1920 -5.9839 4.7507 44 1 4.6660 -3.4383 -0.9497 45 1 5.4642 -4.3812 -3.0784 46 1 3.9106 -5.6022 -4.5455 47 1 1.5580 -5.8929 -3.8842 48 1 0.7517 -4.9607 -1.7539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003344052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:59 Heat of formation + Delta-G solvation = 43.367610 kcal Electronic energy + Delta-G solvation = -30851.534633 eV Core-core repulsion = 26835.932531 eV Total energy + Delta-G solvation = -4015.602102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.44860 -39.96965 -38.22334 -36.75411 -35.33842 -34.96609 -32.77987 -31.72615 -30.60844 -30.20748 -29.92495 -28.52207 -27.29606 -26.33434 -23.33179 -23.21598 -22.99200 -22.23477 -21.96638 -20.82272 -19.20175 -17.92187 -17.28964 -17.03852 -16.74134 -16.27625 -16.01626 -15.74730 -15.25103 -15.01701 -14.78707 -14.51505 -14.34519 -14.01702 -13.83385 -13.71407 -13.63555 -13.11925 -13.09119 -12.86002 -12.73494 -12.43778 -12.32596 -12.21375 -11.83152 -11.68777 -11.40563 -11.25553 -11.13761 -10.91085 -10.87981 -10.86272 -10.72763 -10.32585 -10.30949 -9.97401 -9.51670 -8.84479 -8.74014 -8.68317 -8.60129 -8.50380 -7.84390 -6.90987 -6.31381 -4.39892 0.79249 1.15935 1.63970 1.73676 2.28005 2.97447 3.16681 3.19026 3.21175 3.24519 3.28420 3.83860 4.11155 4.24572 4.29892 4.75361 4.87506 4.96270 5.01102 5.04159 5.10533 5.22420 5.24805 5.33496 5.38807 5.45328 5.50545 5.60155 5.65842 5.72338 5.77335 5.86603 5.88544 5.93767 6.02889 6.11769 6.24629 6.31640 6.41787 6.52269 6.53768 6.58316 6.71946 6.76202 6.78824 6.82255 6.90916 6.99040 7.07447 7.12177 7.37318 7.50692 7.62231 7.83334 7.86206 7.97830 8.55048 8.70842 9.28729 10.75519 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.008414 B = 0.003129 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.795678 B = 8946.448890 C =11498.014027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.236 3.764 10 N -0.554 5.554 11 C 0.518 3.482 12 O -0.558 6.558 13 C 0.109 3.891 14 N -0.725 5.725 15 C 0.241 3.759 16 C -0.225 4.225 17 C -0.050 4.050 18 C -0.187 4.187 19 C -0.007 4.007 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.141 4.141 23 C -0.087 4.087 24 C -0.101 4.101 25 C 0.173 3.827 26 C -0.106 4.106 27 C -0.114 4.114 28 C -0.133 4.133 29 C -0.114 4.114 30 C -0.123 4.123 31 H 0.267 0.733 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.407 0.593 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 -8.830 7.599 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.118 3.882 10 N -0.282 5.282 11 C 0.307 3.693 12 O -0.437 6.437 13 C -0.018 4.018 14 N -0.355 5.355 15 C 0.135 3.865 16 C -0.249 4.249 17 C -0.068 4.068 18 C -0.208 4.208 19 C -0.008 4.008 20 C -0.140 4.140 21 C -0.127 4.127 22 C -0.160 4.160 23 C -0.106 4.106 24 C -0.103 4.103 25 C 0.082 3.918 26 C -0.125 4.125 27 C -0.132 4.132 28 C -0.152 4.152 29 C -0.132 4.132 30 C -0.142 4.142 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.246 0.754 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.365 -9.088 7.423 12.520 hybrid contribution 0.504 0.935 -0.268 1.096 sum 4.869 -8.153 7.154 11.890 Atomic orbital electron populations 1.69908 1.05998 1.27622 1.48957 1.24904 0.94858 0.99303 0.94349 0.86500 0.79910 0.82755 0.78430 1.20418 1.20868 1.19648 1.21385 0.93630 0.90119 1.53075 0.91932 1.19666 0.87150 0.82089 0.99326 1.45864 1.45279 1.34639 1.02379 1.20390 0.79993 0.83286 0.85658 1.90626 1.38710 1.26948 1.87460 1.21174 0.99585 0.97366 0.83640 1.44511 1.54973 1.34288 1.01695 1.17739 0.92685 0.92569 0.83535 1.20603 1.06399 1.00051 0.97866 1.20544 0.96555 0.97895 0.91843 1.20617 1.03155 0.98103 0.98881 1.17836 0.96228 0.95074 0.91618 1.20959 0.98681 0.96308 0.98042 1.20794 0.98322 0.96869 0.96683 1.20678 1.01822 1.00875 0.92581 1.20865 0.96089 0.94472 0.99132 1.17678 1.02392 0.98115 0.92142 1.17546 0.92595 0.94637 0.87059 1.21226 0.95432 0.99274 0.96582 1.20950 0.99465 0.98438 0.94375 1.21036 0.93835 1.00588 0.99702 1.20914 0.95835 1.00241 0.96239 1.21207 0.99895 0.97901 0.95222 0.92282 0.93919 0.93847 0.88756 0.87168 0.75400 0.85347 0.86227 0.86366 0.85872 0.86435 0.86362 0.86157 0.86287 0.86236 0.86432 0.86146 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.26 13.29 55.43 0.74 -22.52 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -13.35 9.16 -34.44 -0.32 -13.67 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.26 4.88 -5.19 -0.03 5.23 16 10 N -0.55 -11.22 2.50 -114.74 -0.29 -11.51 16 11 C 0.52 10.12 7.60 -10.99 -0.08 10.04 16 12 O -0.56 -11.67 15.43 5.55 0.09 -11.58 16 13 C 0.11 1.89 4.05 -5.19 -0.02 1.87 16 14 N -0.73 -11.67 5.63 -59.56 -0.34 -12.00 16 15 C 0.24 3.78 6.67 -83.49 -0.56 3.22 16 16 C -0.22 -3.42 9.29 -39.38 -0.37 -3.78 16 17 C -0.05 -0.67 9.93 -39.99 -0.40 -1.06 16 18 C -0.19 -2.41 9.75 -39.47 -0.38 -2.79 16 19 C -0.01 -0.10 5.74 -106.84 -0.61 -0.71 16 20 C -0.12 -1.40 9.77 -39.47 -0.39 -1.79 16 21 C -0.11 -1.17 9.95 -39.94 -0.40 -1.57 16 22 C -0.14 -1.64 9.95 -39.92 -0.40 -2.03 16 23 C -0.09 -1.17 9.50 -39.53 -0.38 -1.55 16 24 C -0.10 -1.49 5.75 -106.69 -0.61 -2.11 16 25 C 0.17 3.35 4.74 -83.69 -0.40 2.96 16 26 C -0.11 -1.93 9.56 -39.39 -0.38 -2.31 16 27 C -0.11 -1.73 10.04 -39.61 -0.40 -2.13 16 28 C -0.13 -1.86 10.04 -39.55 -0.40 -2.26 16 29 C -0.11 -1.66 10.04 -39.61 -0.40 -2.06 16 30 C -0.12 -2.12 9.69 -39.39 -0.38 -2.50 16 31 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.04 1.02 7.86 -51.93 -0.41 0.61 16 33 H 0.04 0.97 6.47 -51.93 -0.34 0.63 16 34 H 0.09 1.57 7.06 -51.93 -0.37 1.21 16 35 H 0.11 2.02 7.72 -51.93 -0.40 1.62 16 36 H 0.41 6.54 5.54 -40.82 -0.23 6.32 16 37 H 0.13 1.98 6.69 -52.48 -0.35 1.63 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.12 1.54 6.44 -52.49 -0.34 1.20 16 44 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 47 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 48 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 403.75 15.07 6.08 6.08 Total: -1.00 -28.30 403.75 -12.31 -40.62 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.20 Total: 13.38 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -7.38 Total: -17.33 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.11 Total: -46.03 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -28.30 -12.31 -40.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003344052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.987 kcal (2) G-P(sol) polarization free energy of solvation -28.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds