Wall clock time and date at job start Tue Mar 31 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99585 * 2 1 4 4 H 1.48499 * 109.47461 * 269.99945 * 3 2 1 5 5 H 1.48503 * 109.47441 * 30.00405 * 3 2 1 6 6 H 1.48503 * 109.47056 * 150.00013 * 3 2 1 7 7 C 1.37875 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99699 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00106 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00189 * 90.00215 * 10 9 7 12 12 O 1.21285 * 120.00138 * 175.26526 * 11 10 9 13 13 C 1.50701 * 119.99742 * 355.26046 * 11 10 9 14 14 N 1.46501 * 109.47107 * 180.02562 * 13 11 10 15 15 C 1.39321 * 120.00092 * 180.02562 * 14 13 11 16 16 C 1.37881 * 120.30384 * 359.97438 * 15 14 13 17 17 C 1.39140 * 120.74516 * 179.97438 * 16 15 14 18 18 C 1.36176 * 121.09262 * 0.06875 * 17 16 15 19 19 C 1.40516 * 119.95913 * 359.94952 * 18 17 16 20 20 C 1.40579 * 121.20356 * 180.02562 * 19 18 17 21 21 C 1.36103 * 119.66304 * 179.97438 * 20 19 18 22 22 C 1.39341 * 120.97345 * 359.97438 * 21 20 19 23 23 C 1.36160 * 120.96370 * 0.02562 * 22 21 20 24 24 C 1.40359 * 119.66999 * 359.95565 * 23 22 21 25 25 C 1.39919 * 120.00001 * 269.99617 * 10 9 7 26 26 C 1.38876 * 120.07043 * 111.85042 * 25 10 9 27 27 C 1.38108 * 119.93092 * 179.79393 * 26 25 10 28 28 C 1.38285 * 120.06829 * 0.48309 * 27 26 25 29 29 C 1.38275 * 120.14561 * 359.75005 * 28 27 26 30 30 C 1.38117 * 120.06792 * 0.02562 * 29 28 27 31 31 H 0.97000 * 120.00109 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47245 * 59.99712 * 9 7 2 33 33 H 1.09001 * 109.46894 * 299.99641 * 9 7 2 34 34 H 1.09000 * 109.47101 * 60.00743 * 13 11 10 35 35 H 1.08998 * 109.47396 * 300.00314 * 13 11 10 36 36 H 0.96998 * 119.99882 * 0.02562 * 14 13 11 37 37 H 1.08004 * 119.62629 * 0.04599 * 16 15 14 38 38 H 1.07999 * 119.45707 * 180.02562 * 17 16 15 39 39 H 1.07998 * 120.02167 * 180.22799 * 18 17 16 40 40 H 1.07999 * 120.16646 * 359.96589 * 20 19 18 41 41 H 1.08000 * 119.50990 * 179.97438 * 21 20 19 42 42 H 1.08005 * 119.52232 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.16406 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.03311 * 0.02706 * 26 25 10 45 45 H 1.08002 * 119.96873 * 180.23155 * 27 26 25 46 46 H 1.08004 * 119.92737 * 179.72496 * 28 27 26 47 47 H 1.07995 * 119.96929 * 180.02562 * 29 28 27 48 48 H 1.08002 * 120.03877 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6402 -4.1254 1.1658 12 8 3.3605 -5.1012 1.1677 13 6 2.2340 -3.4861 2.4687 14 7 2.8349 -4.2236 3.5828 15 6 2.6003 -3.8170 4.8945 16 6 1.8039 -2.7212 5.1513 17 6 1.5630 -2.3074 6.4578 18 6 2.1060 -2.9696 7.5166 19 6 2.9237 -4.0912 7.2982 20 6 3.4972 -4.7946 8.3719 21 6 4.2840 -5.8772 8.1243 22 6 4.5307 -6.3012 6.8202 23 6 3.9919 -5.6443 5.7562 24 6 3.1750 -4.5237 5.9727 25 6 2.6587 -4.1438 -1.2131 26 6 3.9847 -3.9776 -1.5910 27 6 4.4323 -4.5068 -2.7856 28 6 3.5592 -5.1931 -3.6097 29 6 2.2372 -5.3562 -3.2386 30 6 1.7845 -4.8333 -2.0431 31 1 -0.4850 0.8400 0.0004 32 1 0.6248 -2.5563 -0.8920 33 1 0.6242 -2.5575 0.8880 34 1 1.1481 -3.5086 2.5614 35 1 2.5791 -2.4524 2.4894 36 1 3.3962 -4.9950 3.4071 37 1 1.3611 -2.1785 4.3291 38 1 0.9356 -1.4464 6.6350 39 1 1.9045 -2.6356 8.5237 40 1 3.3144 -4.4773 9.3879 41 1 4.7237 -6.4154 8.9510 42 1 5.1591 -7.1632 6.6507 43 1 4.1920 -5.9839 4.7507 44 1 4.6660 -3.4383 -0.9497 45 1 5.4642 -4.3812 -3.0784 46 1 3.9106 -5.6022 -4.5455 47 1 1.5580 -5.8929 -3.8842 48 1 0.7517 -4.9607 -1.7539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003344052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:57 Heat of formation + Delta-G solvation = 31.924434 kcal Electronic energy + Delta-G solvation = -30852.030847 eV Core-core repulsion = 26835.932531 eV Total energy + Delta-G solvation = -4016.098316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.73485 -41.21360 -39.54888 -37.84847 -36.89241 -36.16291 -34.65770 -32.84100 -31.86510 -31.33082 -31.14068 -29.71728 -29.02987 -27.63768 -25.12451 -24.24466 -24.09570 -23.49548 -23.23414 -21.91410 -20.62318 -19.14741 -18.78430 -18.37590 -18.30896 -17.49109 -17.29711 -16.97465 -16.83055 -16.43905 -15.96644 -15.88429 -15.77794 -15.11668 -14.96946 -14.86007 -14.74616 -14.44243 -14.37658 -14.27650 -14.08447 -13.92669 -13.66883 -13.43961 -13.33289 -13.03840 -12.80341 -12.70408 -12.55035 -12.32923 -12.22194 -12.11844 -11.84003 -11.77174 -11.72792 -11.43142 -11.12161 -10.65015 -10.22060 -9.89789 -9.87116 -9.52339 -9.33470 -8.26442 -8.03944 -6.40940 -0.20459 0.14159 0.34403 0.46811 1.23790 1.37841 1.38550 1.43133 1.50461 1.80977 2.19847 2.34780 2.47719 2.84117 3.05101 3.26579 3.47682 3.79649 3.89923 4.00596 4.02827 4.06665 4.18512 4.20834 4.24538 4.37552 4.44450 4.45242 4.47895 4.56313 4.57392 4.60793 4.63651 4.75830 4.90474 5.02428 5.05673 5.09511 5.14162 5.26177 5.41015 5.42168 5.50616 5.56194 5.57220 5.59738 5.64402 5.69451 5.74536 5.86591 5.94934 6.07178 6.12414 6.24301 6.33006 6.62070 6.68628 7.03884 7.30896 8.79588 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.008414 B = 0.003129 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.795678 B = 8946.448890 C =11498.014027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.030 3.970 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.253 3.747 10 N -0.554 5.554 11 C 0.515 3.485 12 O -0.573 6.573 13 C 0.125 3.875 14 N -0.728 5.728 15 C 0.218 3.782 16 C -0.238 4.238 17 C -0.066 4.066 18 C -0.176 4.176 19 C -0.029 4.029 20 C -0.121 4.121 21 C -0.108 4.108 22 C -0.133 4.133 23 C -0.114 4.114 24 C -0.117 4.117 25 C 0.131 3.869 26 C -0.132 4.132 27 C -0.113 4.113 28 C -0.123 4.123 29 C -0.108 4.108 30 C -0.141 4.141 31 H 0.270 0.730 32 H 0.025 0.975 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.405 0.595 37 H 0.115 0.885 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.149 0.851 46 H 0.161 0.839 47 H 0.156 0.844 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -9.743 8.351 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.171 4.171 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.069 0.931 9 C 0.133 3.867 10 N -0.281 5.281 11 C 0.305 3.695 12 O -0.454 6.454 13 C -0.003 4.003 14 N -0.359 5.359 15 C 0.113 3.887 16 C -0.263 4.263 17 C -0.084 4.084 18 C -0.196 4.196 19 C -0.029 4.029 20 C -0.138 4.138 21 C -0.126 4.126 22 C -0.151 4.151 23 C -0.132 4.132 24 C -0.119 4.119 25 C 0.041 3.959 26 C -0.151 4.151 27 C -0.131 4.131 28 C -0.141 4.141 29 C -0.126 4.126 30 C -0.161 4.161 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.244 0.756 37 H 0.133 0.867 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.160 0.840 43 H 0.133 0.867 44 H 0.120 0.880 45 H 0.166 0.834 46 H 0.178 0.822 47 H 0.174 0.826 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.492 -10.004 8.188 14.046 hybrid contribution 0.221 1.096 -0.470 1.213 sum 5.713 -8.909 7.718 13.098 Atomic orbital electron populations 1.69986 1.07040 1.28384 1.49809 1.25545 0.95529 1.01979 0.94084 0.85638 0.78762 0.79488 0.78350 1.20182 1.20178 1.19687 1.21525 0.93170 0.91292 1.52707 0.93066 1.19292 0.87084 0.82237 0.98068 1.45761 1.44887 1.34110 1.03315 1.20687 0.79656 0.83083 0.86101 1.90590 1.39449 1.27675 1.87725 1.20909 0.99542 0.96482 0.83317 1.44369 1.55535 1.34343 1.01665 1.17935 0.93853 0.93423 0.83453 1.20704 1.06748 1.00192 0.98644 1.20771 0.97474 0.98955 0.91212 1.20994 1.01492 0.97076 1.00000 1.18210 0.97017 0.95922 0.91799 1.21335 0.97829 0.95955 0.98719 1.21218 0.97591 0.96610 0.97200 1.21064 1.00700 1.00798 0.92578 1.20958 0.97388 0.95100 0.99803 1.17914 1.02839 0.98665 0.92514 1.17947 0.93804 0.96760 0.87390 1.21294 0.94921 1.00778 0.98140 1.21331 1.01243 0.97438 0.93075 1.21544 0.93108 0.98806 1.00606 1.21365 0.96966 0.99061 0.95225 1.21399 0.99744 0.98584 0.96353 0.92087 0.95727 0.94255 0.88703 0.88666 0.75609 0.86668 0.84313 0.83346 0.82871 0.82960 0.84029 0.86676 0.88029 0.83354 0.82156 0.82617 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.09 13.29 21.45 0.28 -48.81 16 2 C 0.03 1.55 5.46 84.65 0.46 2.01 16 3 Si 0.95 41.47 29.54 68.60 2.03 43.49 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -28.18 9.16 25.60 0.23 -27.94 16 8 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 9 C 0.25 11.97 4.88 85.63 0.42 12.38 16 10 N -0.55 -23.94 2.50 -635.30 -1.59 -25.53 16 11 C 0.52 21.64 7.60 87.66 0.67 22.30 16 12 O -0.57 -25.49 15.43 -3.05 -0.05 -25.53 16 13 C 0.12 4.73 4.05 85.63 0.35 5.07 16 14 N -0.73 -25.43 5.63 -342.35 -1.93 -27.36 16 15 C 0.22 7.27 6.67 38.58 0.26 7.53 16 16 C -0.24 -7.70 9.29 22.40 0.21 -7.49 16 17 C -0.07 -1.77 9.93 22.01 0.22 -1.55 16 18 C -0.18 -4.27 9.75 22.35 0.22 -4.05 16 19 C -0.03 -0.76 5.74 -21.30 -0.12 -0.89 16 20 C -0.12 -2.43 9.77 22.34 0.22 -2.21 16 21 C -0.11 -2.00 9.95 22.04 0.22 -1.78 16 22 C -0.13 -2.86 9.95 22.05 0.22 -2.64 16 23 C -0.11 -3.10 9.50 22.30 0.21 -2.89 16 24 C -0.12 -3.54 5.75 -21.20 -0.12 -3.66 16 25 C 0.13 5.33 4.74 38.16 0.18 5.51 16 26 C -0.13 -4.97 9.56 22.39 0.21 -4.76 16 27 C -0.11 -3.27 10.04 22.25 0.22 -3.05 16 28 C -0.12 -3.06 10.04 22.29 0.22 -2.83 16 29 C -0.11 -2.93 10.04 22.25 0.22 -2.71 16 30 C -0.14 -4.96 9.69 22.39 0.22 -4.74 16 31 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 32 H 0.02 1.25 7.86 -2.39 -0.02 1.23 16 33 H 0.04 1.88 6.47 -2.39 -0.02 1.86 16 34 H 0.10 3.50 7.06 -2.39 -0.02 3.48 16 35 H 0.10 3.85 7.72 -2.39 -0.02 3.83 16 36 H 0.41 14.16 5.54 -92.71 -0.51 13.65 16 37 H 0.12 3.90 6.69 -2.91 -0.02 3.88 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 40 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.12 3.13 6.44 -2.91 -0.02 3.11 16 44 H 0.10 4.04 8.06 -2.91 -0.02 4.02 16 45 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 46 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 47 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 48 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -63.94 403.75 4.15 -59.79 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: 0.47 Total: 42.34 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.94 Total: -18.39 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -3.23 Total: -101.70 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -63.94 4.15 -59.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003344052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.710 kcal (2) G-P(sol) polarization free energy of solvation -63.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds