Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38334 * 119.86943 * 2 1 4 4 C 1.38010 * 120.12359 * 179.97438 * 3 2 1 5 5 C 1.39395 * 119.87169 * 359.97438 * 4 3 2 6 6 C 1.48284 * 120.12699 * 180.02562 * 5 4 3 7 7 C 1.40328 * 118.85440 * 180.21205 * 6 5 4 8 8 C 1.38738 * 119.39878 * 180.28615 * 7 6 5 9 9 C 1.47919 * 121.33776 * 179.77316 * 8 7 6 10 10 O 1.21549 * 119.99870 * 131.63485 * 9 8 7 11 11 N 1.34775 * 120.00071 * 311.90614 * 9 8 7 12 12 C 1.46501 * 119.99949 * 4.62755 * 11 9 8 13 13 C 1.46497 * 120.00028 * 184.62472 * 11 9 8 14 14 C 1.50699 * 109.46982 * 89.99936 * 13 11 9 15 15 H 1.08003 * 120.00303 * 0.02562 * 14 13 11 16 16 C 1.37880 * 120.00170 * 180.02562 * 14 13 11 17 17 N 1.31521 * 119.99674 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00460 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47245 * 59.99695 * 18 16 14 20 20 H 1.48503 * 109.47468 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47066 * 300.00058 * 18 16 14 22 22 C 1.46305 * 117.32641 * 359.50219 * 8 7 6 23 23 C 1.39919 * 121.51471 * 180.30074 * 22 8 7 24 24 C 1.36335 * 119.59898 * 180.02562 * 23 22 8 25 25 C 1.39331 * 120.82751 * 359.94905 * 24 23 22 26 26 C 1.36088 * 121.08918 * 0.02622 * 25 24 23 27 27 C 1.40740 * 119.71792 * 0.02562 * 26 25 24 28 28 N 1.31610 * 118.85466 * 0.02562 * 6 5 4 29 29 C 1.39406 * 119.74873 * 0.28069 * 5 4 3 30 30 C 1.38003 * 119.86834 * 359.41823 * 29 5 4 31 31 H 1.08997 * 109.47097 * 90.00193 * 1 2 3 32 32 H 1.09000 * 109.47387 * 209.99965 * 1 2 3 33 33 H 1.09002 * 109.47647 * 330.00011 * 1 2 3 34 34 H 1.07991 * 119.94047 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.06151 * 180.02562 * 4 3 2 36 36 H 1.07997 * 120.30183 * 0.05971 * 7 6 5 37 37 H 1.08997 * 109.47099 * 84.89129 * 12 11 9 38 38 H 1.08993 * 109.46669 * 204.89547 * 12 11 9 39 39 H 1.09001 * 109.46887 * 324.89517 * 12 11 9 40 40 H 1.08997 * 109.47245 * 210.00030 * 13 11 9 41 41 H 1.09004 * 109.47114 * 330.00517 * 13 11 9 42 42 H 0.97001 * 119.99594 * 180.02562 * 17 16 14 43 43 H 1.07997 * 120.20142 * 359.97438 * 23 22 8 44 44 H 1.08007 * 119.58987 * 179.97438 * 24 23 22 45 45 H 1.07998 * 119.45686 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.13917 * 180.02562 * 26 25 24 47 47 H 1.07992 * 120.06289 * 179.72492 * 29 5 4 48 48 H 1.07998 * 119.93647 * 180.27594 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1996 0.0000 4 6 3.5760 1.2057 0.0005 5 6 4.2756 0.0000 0.0016 6 6 5.7585 0.0000 0.0028 7 6 6.4356 -1.2291 -0.0007 8 6 7.8230 -1.2423 0.0064 9 6 8.5802 -2.5130 0.0081 10 8 9.4961 -2.6757 -0.7743 11 7 8.2510 -3.4924 0.8734 12 6 7.0812 -3.3398 1.7420 13 6 9.0630 -4.7097 0.9453 14 6 10.1581 -4.5235 1.9637 15 1 10.2407 -3.5918 2.5037 16 6 11.0546 -5.5426 2.2061 17 7 10.9537 -6.6774 1.5489 18 14 12.4116 -5.3122 3.4690 19 1 11.8093 -5.0404 4.7988 20 1 13.2348 -6.5461 3.5418 21 1 13.2693 -4.1672 3.0706 22 6 8.5070 0.0510 0.0059 23 6 9.9033 0.1399 0.0065 24 6 10.5001 1.3657 0.0066 25 6 9.7368 2.5314 0.0050 26 6 8.3769 2.4809 0.0040 27 6 7.7250 1.2336 0.0049 28 7 6.3936 1.1527 0.0033 29 6 3.5760 -1.2057 -0.0038 30 6 2.1960 -1.1996 0.0020 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6529 2.1330 0.0004 35 1 4.1129 2.1428 0.0010 36 1 5.8819 -2.1563 -0.0051 37 1 6.1864 -3.6545 1.2050 38 1 7.2067 -3.9565 2.6319 39 1 6.9803 -2.2949 2.0353 40 1 8.4333 -5.5497 1.2383 41 1 9.5049 -4.9099 -0.0308 42 1 11.5842 -7.3945 1.7198 43 1 10.5048 -0.7571 0.0077 44 1 11.5780 1.4341 0.0074 45 1 10.2327 3.4908 0.0047 46 1 7.8004 3.3941 0.0024 47 1 4.1129 -2.1427 -0.0075 48 1 1.6528 -2.1331 0.0023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003358724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = 47.827737 kcal Electronic energy + Delta-G solvation = -30945.963665 eV Core-core repulsion = 26930.554968 eV Total energy + Delta-G solvation = -4015.408697 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.95257 -39.46396 -38.81042 -37.09371 -35.02252 -33.43733 -33.36615 -32.51536 -31.23534 -30.33469 -30.05516 -27.90219 -27.11993 -26.25364 -24.58786 -23.73892 -23.16094 -22.43974 -21.84611 -21.24270 -19.06764 -18.10812 -17.46400 -17.00573 -16.59120 -16.20622 -15.52593 -15.25038 -15.16143 -15.07748 -14.82449 -14.54815 -14.28749 -14.13659 -13.96004 -13.88522 -13.66374 -13.49489 -13.18816 -12.80496 -12.58277 -12.49575 -12.32823 -12.24452 -11.96381 -11.67536 -11.59635 -11.47996 -11.31461 -11.27983 -11.11015 -10.98464 -10.67386 -10.31171 -10.23170 -9.86174 -9.74267 -9.33012 -9.12372 -9.05698 -8.50826 -8.42773 -8.00025 -7.82053 -6.12004 -4.17684 0.05261 0.61385 1.24244 1.33716 1.84494 2.86052 3.21501 3.27653 3.32159 3.36232 3.63234 3.69927 3.89139 4.18125 4.37022 4.39937 4.62665 4.63352 4.67991 4.70467 4.82681 4.85368 5.06374 5.08184 5.10546 5.22539 5.24175 5.29098 5.30891 5.44230 5.50057 5.52518 5.57574 5.62993 5.71979 5.77791 5.84846 5.91125 5.98123 6.07158 6.11827 6.19302 6.30556 6.37946 6.40064 6.51682 6.54828 6.77493 6.84708 6.91421 7.30362 7.37970 7.83198 7.84928 8.12394 8.17753 8.70853 8.89243 9.47674 10.96072 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009543 B = 0.002961 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.377576 B = 9455.063164 C =11796.650282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.129 4.129 4 C -0.072 4.072 5 C -0.055 4.055 6 C 0.203 3.797 7 C -0.145 4.145 8 C -0.041 4.041 9 C 0.548 3.452 10 O -0.524 6.524 11 N -0.587 5.587 12 C 0.077 3.923 13 C 0.244 3.756 14 C -0.532 4.532 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.074 4.074 23 C -0.077 4.077 24 C -0.121 4.121 25 C -0.098 4.098 26 C -0.101 4.101 27 C 0.133 3.867 28 N -0.468 5.468 29 C -0.093 4.093 30 C -0.123 4.123 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.048 0.952 42 H 0.265 0.735 43 H 0.144 0.856 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.135 0.865 47 H 0.129 0.871 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.274 16.554 -2.119 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.146 4.146 4 C -0.091 4.091 5 C -0.056 4.056 6 C 0.051 3.949 7 C -0.165 4.165 8 C -0.052 4.052 9 C 0.333 3.667 10 O -0.402 6.402 11 N -0.318 5.318 12 C -0.067 4.067 13 C 0.126 3.874 14 C -0.571 4.571 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.076 4.076 23 C -0.096 4.096 24 C -0.139 4.139 25 C -0.117 4.117 26 C -0.119 4.119 27 C 0.012 3.988 28 N -0.176 5.176 29 C -0.112 4.112 30 C -0.141 4.141 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.162 0.838 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.152 0.848 47 H 0.147 0.853 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.025 17.071 -2.534 24.242 hybrid contribution 1.273 -0.797 0.781 1.693 sum -15.752 16.274 -1.754 22.716 Atomic orbital electron populations 1.20826 0.91176 1.02877 1.02403 1.20066 0.96152 0.93262 0.98287 1.21015 0.94003 0.97596 1.02034 1.21311 0.93641 0.98083 0.96098 1.18521 0.89624 0.93994 1.03454 1.19642 0.92825 0.88021 0.94449 1.22383 0.93418 0.99410 1.01323 1.21751 0.93602 0.93875 0.95993 1.17907 0.83814 0.82735 0.82227 1.90779 1.29847 1.80281 1.39253 1.48129 1.28141 1.19515 1.36044 1.21870 0.87626 1.01849 0.95371 1.19412 0.89698 0.79389 0.98923 1.21364 1.13051 1.00528 1.22124 0.92432 1.24925 0.97601 0.94989 0.96396 1.69921 1.37359 1.04549 1.41291 0.86549 0.81756 0.77605 0.81489 1.20179 1.21074 1.20104 1.19621 0.94769 0.91709 1.01533 1.21274 0.93128 0.99414 0.95779 1.21016 1.00565 0.92041 1.00289 1.20914 0.93606 0.98738 0.98474 1.20712 0.94247 0.95720 1.01242 1.18635 0.88284 0.92792 0.99056 1.67399 1.09299 1.27965 1.12965 1.21291 0.94300 0.97323 0.98285 1.20944 0.93723 0.97742 1.01737 0.91053 0.91404 0.91496 0.85835 0.84672 0.83555 0.93387 0.90096 0.92306 0.94488 0.93391 0.92521 0.83808 0.85286 0.85317 0.84756 0.85313 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.08 -0.66 5.88 -104.55 -0.62 -1.28 16 3 C -0.13 -1.17 9.68 -39.63 -0.38 -1.55 16 4 C -0.07 -0.79 9.56 -39.23 -0.37 -1.16 16 5 C -0.06 -0.66 5.88 -104.90 -0.62 -1.28 16 6 C 0.20 2.88 6.73 -83.04 -0.56 2.32 16 7 C -0.14 -2.14 7.21 -38.61 -0.28 -2.42 16 8 C -0.04 -0.73 5.11 -102.51 -0.52 -1.25 16 9 C 0.55 11.68 6.82 -12.30 -0.08 11.60 16 10 O -0.52 -13.07 15.10 5.32 0.08 -12.99 16 11 N -0.59 -12.38 2.86 -184.05 -0.53 -12.90 16 12 C 0.08 1.23 9.08 59.85 0.54 1.77 16 13 C 0.24 6.23 5.18 -5.20 -0.03 6.21 16 14 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 15 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.07 -1.27 5.90 -104.68 -0.62 -1.89 16 23 C -0.08 -1.30 9.29 -39.64 -0.37 -1.67 16 24 C -0.12 -1.61 9.96 -39.86 -0.40 -2.01 16 25 C -0.10 -1.12 9.94 -39.95 -0.40 -1.51 16 26 C -0.10 -1.27 9.99 -39.41 -0.39 -1.66 16 27 C 0.13 2.06 6.62 -84.90 -0.56 1.50 16 28 N -0.47 -7.00 9.23 -7.61 -0.07 -7.07 16 29 C -0.09 -0.96 9.40 -39.23 -0.37 -1.33 16 30 C -0.12 -1.11 9.68 -39.63 -0.38 -1.49 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.14 1.46 7.50 -52.49 -0.39 1.06 16 36 H 0.15 1.85 4.36 -52.49 -0.23 1.62 16 37 H 0.05 0.62 7.11 -51.93 -0.37 0.25 16 38 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 39 H 0.06 0.87 6.24 -51.93 -0.32 0.55 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.53 16 41 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.14 2.75 6.45 -52.49 -0.34 2.41 16 44 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.13 1.18 6.10 -52.49 -0.32 0.85 16 48 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -33.20 400.03 -11.35 -44.56 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.11 Total: 2.00 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -6.47 Total: -10.83 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.14 Total: -45.23 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.20 -11.35 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003358724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.385 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds