Wall clock time and date at job start Tue Mar 31 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38334 * 119.86943 * 2 1 4 4 C 1.38010 * 120.12359 * 179.97438 * 3 2 1 5 5 C 1.39395 * 119.87169 * 359.97438 * 4 3 2 6 6 C 1.48284 * 120.12699 * 180.02562 * 5 4 3 7 7 C 1.40328 * 118.85440 * 180.21205 * 6 5 4 8 8 C 1.38738 * 119.39878 * 180.28615 * 7 6 5 9 9 C 1.47919 * 121.33776 * 179.77316 * 8 7 6 10 10 O 1.21549 * 119.99870 * 131.63485 * 9 8 7 11 11 N 1.34775 * 120.00071 * 311.90614 * 9 8 7 12 12 C 1.46501 * 119.99949 * 4.62755 * 11 9 8 13 13 C 1.46497 * 120.00028 * 184.62472 * 11 9 8 14 14 C 1.50699 * 109.46982 * 89.99936 * 13 11 9 15 15 H 1.08003 * 120.00303 * 0.02562 * 14 13 11 16 16 C 1.37880 * 120.00170 * 180.02562 * 14 13 11 17 17 N 1.31521 * 119.99674 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00460 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47245 * 59.99695 * 18 16 14 20 20 H 1.48503 * 109.47468 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47066 * 300.00058 * 18 16 14 22 22 C 1.46305 * 117.32641 * 359.50219 * 8 7 6 23 23 C 1.39919 * 121.51471 * 180.30074 * 22 8 7 24 24 C 1.36335 * 119.59898 * 180.02562 * 23 22 8 25 25 C 1.39331 * 120.82751 * 359.94905 * 24 23 22 26 26 C 1.36088 * 121.08918 * 0.02622 * 25 24 23 27 27 C 1.40740 * 119.71792 * 0.02562 * 26 25 24 28 28 N 1.31610 * 118.85466 * 0.02562 * 6 5 4 29 29 C 1.39406 * 119.74873 * 0.28069 * 5 4 3 30 30 C 1.38003 * 119.86834 * 359.41823 * 29 5 4 31 31 H 1.08997 * 109.47097 * 90.00193 * 1 2 3 32 32 H 1.09000 * 109.47387 * 209.99965 * 1 2 3 33 33 H 1.09002 * 109.47647 * 330.00011 * 1 2 3 34 34 H 1.07991 * 119.94047 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.06151 * 180.02562 * 4 3 2 36 36 H 1.07997 * 120.30183 * 0.05971 * 7 6 5 37 37 H 1.08997 * 109.47099 * 84.89129 * 12 11 9 38 38 H 1.08993 * 109.46669 * 204.89547 * 12 11 9 39 39 H 1.09001 * 109.46887 * 324.89517 * 12 11 9 40 40 H 1.08997 * 109.47245 * 210.00030 * 13 11 9 41 41 H 1.09004 * 109.47114 * 330.00517 * 13 11 9 42 42 H 0.97001 * 119.99594 * 180.02562 * 17 16 14 43 43 H 1.07997 * 120.20142 * 359.97438 * 23 22 8 44 44 H 1.08007 * 119.58987 * 179.97438 * 24 23 22 45 45 H 1.07998 * 119.45686 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.13917 * 180.02562 * 26 25 24 47 47 H 1.07992 * 120.06289 * 179.72492 * 29 5 4 48 48 H 1.07998 * 119.93647 * 180.27594 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1996 0.0000 4 6 3.5760 1.2057 0.0005 5 6 4.2756 0.0000 0.0016 6 6 5.7585 0.0000 0.0028 7 6 6.4356 -1.2291 -0.0007 8 6 7.8230 -1.2423 0.0064 9 6 8.5802 -2.5130 0.0081 10 8 9.4961 -2.6757 -0.7743 11 7 8.2510 -3.4924 0.8734 12 6 7.0812 -3.3398 1.7420 13 6 9.0630 -4.7097 0.9453 14 6 10.1581 -4.5235 1.9637 15 1 10.2407 -3.5918 2.5037 16 6 11.0546 -5.5426 2.2061 17 7 10.9537 -6.6774 1.5489 18 14 12.4116 -5.3122 3.4690 19 1 11.8093 -5.0404 4.7988 20 1 13.2348 -6.5461 3.5418 21 1 13.2693 -4.1672 3.0706 22 6 8.5070 0.0510 0.0059 23 6 9.9033 0.1399 0.0065 24 6 10.5001 1.3657 0.0066 25 6 9.7368 2.5314 0.0050 26 6 8.3769 2.4809 0.0040 27 6 7.7250 1.2336 0.0049 28 7 6.3936 1.1527 0.0033 29 6 3.5760 -1.2057 -0.0038 30 6 2.1960 -1.1996 0.0020 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6529 2.1330 0.0004 35 1 4.1129 2.1428 0.0010 36 1 5.8819 -2.1563 -0.0051 37 1 6.1864 -3.6545 1.2050 38 1 7.2067 -3.9565 2.6319 39 1 6.9803 -2.2949 2.0353 40 1 8.4333 -5.5497 1.2383 41 1 9.5049 -4.9099 -0.0308 42 1 11.5842 -7.3945 1.7198 43 1 10.5048 -0.7571 0.0077 44 1 11.5780 1.4341 0.0074 45 1 10.2327 3.4908 0.0047 46 1 7.8004 3.3941 0.0024 47 1 4.1129 -2.1427 -0.0075 48 1 1.6528 -2.1331 0.0023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003358724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:11 Heat of formation + Delta-G solvation = 30.473550 kcal Electronic energy + Delta-G solvation = -30946.716199 eV Core-core repulsion = 26930.554968 eV Total energy + Delta-G solvation = -4016.161231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.13806 -40.53648 -40.11455 -38.13533 -36.79219 -35.04211 -34.25751 -34.14557 -32.01133 -31.33050 -31.15566 -29.75390 -27.96326 -27.70103 -26.10718 -24.87277 -24.46947 -23.41266 -23.08630 -22.11997 -20.46076 -19.26142 -18.78914 -18.56271 -18.21398 -17.51261 -17.09799 -16.42702 -16.26686 -16.08292 -15.99996 -15.93105 -15.52086 -15.41254 -15.06202 -14.74161 -14.54732 -14.51385 -14.27497 -14.25464 -14.02606 -13.71267 -13.52862 -13.39482 -13.20760 -12.95542 -12.90955 -12.63919 -12.61393 -12.48370 -12.45872 -12.25906 -12.13935 -11.85599 -11.82164 -11.56158 -11.27647 -10.68367 -10.50150 -10.24477 -9.84889 -9.62430 -9.50238 -8.96573 -8.27682 -6.42689 -1.06167 -0.47676 0.45332 0.52404 0.64971 1.34161 1.37730 1.45025 1.59606 1.87341 2.12892 2.35688 2.79978 2.89240 3.02220 3.10068 3.21090 3.38314 3.55051 3.72257 3.95214 3.97738 4.01364 4.11363 4.15950 4.22282 4.27943 4.33023 4.41471 4.52143 4.54897 4.61137 4.62574 4.78936 4.83709 4.90873 4.91756 4.94240 4.96922 4.99999 5.14196 5.19448 5.24463 5.30755 5.35858 5.41106 5.45328 5.54522 5.58911 5.70774 5.71501 5.81316 5.97849 6.07442 6.46821 6.64333 6.71655 7.07135 7.29209 8.79659 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009543 B = 0.002961 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.377576 B = 9455.063164 C =11796.650282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.081 4.081 5 C -0.079 4.079 6 C 0.199 3.801 7 C -0.126 4.126 8 C -0.071 4.071 9 C 0.547 3.453 10 O -0.576 6.576 11 N -0.593 5.593 12 C 0.073 3.927 13 C 0.259 3.741 14 C -0.548 4.548 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.965 3.035 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.277 1.277 22 C -0.093 4.093 23 C -0.119 4.119 24 C -0.106 4.106 25 C -0.087 4.087 26 C -0.095 4.095 27 C 0.117 3.883 28 N -0.466 5.466 29 C -0.099 4.099 30 C -0.128 4.128 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.132 0.868 36 H 0.166 0.834 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.005 0.995 42 H 0.269 0.731 43 H 0.105 0.895 44 H 0.152 0.848 45 H 0.175 0.825 46 H 0.164 0.836 47 H 0.137 0.863 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.582 19.207 -0.971 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.149 4.149 4 C -0.100 4.100 5 C -0.080 4.080 6 C 0.047 3.953 7 C -0.146 4.146 8 C -0.082 4.082 9 C 0.334 3.666 10 O -0.457 6.457 11 N -0.323 5.323 12 C -0.069 4.069 13 C 0.139 3.861 14 C -0.587 4.587 15 H 0.069 0.931 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.789 3.211 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.203 1.203 22 C -0.096 4.096 23 C -0.138 4.138 24 C -0.123 4.123 25 C -0.106 4.106 26 C -0.113 4.113 27 C -0.004 4.004 28 N -0.175 5.175 29 C -0.118 4.118 30 C -0.146 4.146 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.150 0.850 36 H 0.183 0.817 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.023 0.977 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.169 0.831 45 H 0.193 0.807 46 H 0.181 0.819 47 H 0.154 0.846 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.376 19.739 -1.363 27.693 hybrid contribution 1.854 -1.542 0.374 2.440 sum -17.522 18.197 -0.989 25.281 Atomic orbital electron populations 1.20895 0.89047 1.03977 1.03312 1.20465 0.97754 0.92870 0.96350 1.21288 0.93326 0.98949 1.01342 1.21386 0.94587 0.97544 0.96448 1.18537 0.88262 0.95271 1.05966 1.19990 0.94092 0.87434 0.93782 1.22568 0.92114 1.00741 0.99219 1.21400 0.94572 0.92320 0.99925 1.18436 0.83300 0.83684 0.81145 1.90725 1.32286 1.81350 1.41305 1.48091 1.29053 1.18263 1.36873 1.22136 0.86851 1.02876 0.95021 1.18909 0.89827 0.81327 0.96061 1.21604 1.14157 1.00352 1.22562 0.93148 1.25809 0.99906 0.94586 0.98379 1.70032 1.38378 1.05313 1.42609 0.85504 0.78610 0.77645 0.79314 1.18586 1.20027 1.20273 1.19784 0.95127 0.92155 1.02536 1.21105 0.93177 0.99629 0.99877 1.21366 1.02000 0.91384 0.97591 1.21351 0.93153 0.99667 0.96439 1.21139 0.95027 0.95500 0.99680 1.19018 0.88500 0.93229 0.99659 1.67483 1.08975 1.28203 1.12796 1.21462 0.95145 0.97054 0.98150 1.21257 0.93238 0.99035 1.01040 0.90083 0.90409 0.90399 0.83621 0.85014 0.81719 0.89715 0.90215 0.90982 0.94717 0.97692 0.92190 0.87671 0.83056 0.80714 0.81851 0.84576 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.01 71.24 0.71 -0.24 16 2 C -0.07 -1.04 5.88 -19.82 -0.12 -1.16 16 3 C -0.13 -2.04 9.68 22.24 0.22 -1.83 16 4 C -0.08 -1.64 9.56 22.49 0.21 -1.42 16 5 C -0.08 -1.83 5.88 -20.04 -0.12 -1.95 16 6 C 0.20 5.59 6.73 42.36 0.29 5.88 16 7 C -0.13 -3.78 7.21 22.90 0.17 -3.61 16 8 C -0.07 -2.68 5.11 -18.49 -0.09 -2.77 16 9 C 0.55 25.11 6.82 86.81 0.59 25.70 16 10 O -0.58 -31.54 15.10 -3.87 -0.06 -31.59 16 11 N -0.59 -26.40 2.86 -854.50 -2.44 -28.85 16 12 C 0.07 2.35 9.08 127.77 1.16 3.51 16 13 C 0.26 14.08 5.18 85.63 0.44 14.53 16 14 C -0.55 -31.80 9.39 25.60 0.24 -31.56 16 15 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 16 C 0.01 0.74 5.46 84.65 0.46 1.21 16 17 N -0.92 -55.51 13.29 21.45 0.28 -55.23 16 18 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 C -0.09 -3.37 5.90 -19.90 -0.12 -3.49 16 23 C -0.12 -4.27 9.29 22.23 0.21 -4.06 16 24 C -0.11 -2.75 9.96 22.09 0.22 -2.53 16 25 C -0.09 -1.74 9.94 22.03 0.22 -1.52 16 26 C -0.10 -2.19 9.99 22.38 0.22 -1.96 16 27 C 0.12 3.57 6.62 40.39 0.27 3.83 16 28 N -0.47 -13.66 9.23 -178.00 -1.64 -15.30 16 29 C -0.10 -1.88 9.40 22.50 0.21 -1.67 16 30 C -0.13 -1.95 9.68 22.24 0.22 -1.74 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 33 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 34 H 0.15 1.55 8.06 -2.92 -0.02 1.52 16 35 H 0.13 2.68 7.50 -2.91 -0.02 2.65 16 36 H 0.17 4.08 4.36 -2.91 -0.01 4.07 16 37 H 0.08 2.09 7.11 -2.39 -0.02 2.07 16 38 H 0.08 2.58 8.03 -2.39 -0.02 2.56 16 39 H 0.07 2.14 6.24 -2.39 -0.01 2.12 16 40 H 0.03 1.87 8.07 -2.39 -0.02 1.85 16 41 H 0.00 0.31 7.36 -2.38 -0.02 0.29 16 42 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.11 4.52 6.45 -2.91 -0.02 4.50 16 44 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 46 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 47 H 0.14 2.25 6.10 -2.91 -0.02 2.24 16 48 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -78.22 400.03 4.77 -73.45 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.99 Total: 17.49 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.61 Total: -6.85 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -3.80 Total: -99.37 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.06 Total: -31.59 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -78.22 4.77 -73.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003358724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.924 kcal (2) G-P(sol) polarization free energy of solvation -78.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds