Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 120.00057 * 2 1 4 4 H 1.48498 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47256 * 300.00549 * 3 2 1 6 6 H 1.48496 * 109.46688 * 60.00316 * 3 2 1 7 7 C 1.37876 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00174 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47045 * 180.02562 * 9 7 2 11 11 C 1.34129 * 125.13362 * 125.00717 * 10 9 7 12 12 C 1.38006 * 107.92650 * 179.97438 * 11 10 9 13 13 C 1.47166 * 126.81735 * 179.97438 * 12 11 10 14 14 O 1.21639 * 120.00170 * 180.02562 * 13 12 11 15 15 N 1.34784 * 120.00062 * 0.02562 * 13 12 11 16 16 C 1.38903 * 120.00032 * 179.97438 * 15 13 12 17 17 N 1.29645 * 124.94622 * 359.70010 * 16 15 13 18 18 C 1.32008 * 116.90677 * 179.76946 * 17 16 15 19 19 C 1.33427 * 114.57291 * 0.51854 * 18 17 16 20 20 S 1.70971 * 124.94549 * 180.02562 * 16 15 13 21 21 C 1.46755 * 106.36568 * 359.97438 * 12 11 10 22 22 C 1.47694 * 126.54285 * 179.97438 * 21 12 11 23 23 C 1.34857 * 125.27273 * 144.99834 * 22 21 12 24 24 C 1.37932 * 114.69649 * 179.70412 * 23 22 21 25 25 C 1.33642 * 115.07207 * 0.27489 * 24 23 22 26 26 S 1.75861 * 109.76221 * 359.97438 * 25 24 23 27 27 N 1.31573 * 106.91551 * 0.22645 * 21 12 11 28 28 H 0.97003 * 119.99696 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46880 * 60.00566 * 9 7 2 30 30 H 1.09004 * 109.47383 * 300.00933 * 9 7 2 31 31 H 1.07998 * 126.03265 * 0.02562 * 11 10 9 32 32 H 0.96997 * 119.99608 * 0.02562 * 15 13 12 33 33 H 1.07996 * 122.71015 * 180.24157 * 18 17 16 34 34 H 1.07994 * 125.97238 * 179.69325 * 19 18 17 35 35 H 1.08002 * 122.65490 * 359.97438 * 23 22 21 36 36 H 1.08001 * 122.46879 * 180.28869 * 24 23 22 37 37 H 1.08000 * 125.11852 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2265 -4.6082 0.8979 12 6 3.2608 -5.4583 0.5632 13 6 3.6580 -6.6857 1.2715 14 8 4.5959 -7.3456 0.8658 15 7 2.9826 -7.0786 2.3697 16 6 3.3572 -8.2373 3.0379 17 7 4.3343 -9.0138 2.6873 18 6 4.5548 -10.0744 3.4418 19 6 3.7179 -10.2057 4.4726 20 16 2.5918 -8.8513 4.4380 21 6 3.8860 -4.8954 -0.6393 22 6 5.0394 -5.4533 -1.3740 23 6 5.2106 -5.4008 -2.7106 24 6 6.3731 -5.9870 -3.1662 25 6 7.1476 -6.5211 -2.2171 26 16 6.4014 -6.2911 -0.6414 27 7 3.2264 -3.7960 -0.9348 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 1.5540 -4.7245 1.7349 32 1 2.2345 -6.5525 2.6930 33 1 5.3457 -10.7811 3.2383 34 1 3.7283 -11.0034 5.2005 35 1 4.4962 -4.9328 -3.3717 36 1 6.6380 -6.0123 -4.2129 37 1 8.0900 -7.0191 -2.3916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003410491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = 138.165640 kcal Electronic energy + Delta-G solvation = -25758.876638 eV Core-core repulsion = 21950.375577 eV Total energy + Delta-G solvation = -3808.501061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.046 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86885 -40.07400 -38.49263 -37.28429 -34.89284 -33.90994 -32.16841 -30.70644 -29.36682 -29.03564 -27.12747 -25.38162 -24.29266 -23.40856 -22.42755 -21.17620 -20.48437 -19.42596 -19.04005 -18.38239 -17.34570 -16.88785 -16.43180 -16.32148 -15.59585 -15.48817 -15.09377 -15.00130 -14.56225 -14.32383 -14.17762 -13.68904 -13.42584 -13.22486 -12.83034 -12.65897 -12.35408 -12.13113 -11.95032 -11.79117 -11.69554 -11.15159 -11.03291 -10.95454 -10.59744 -10.43438 -10.20222 -10.07067 -9.92393 -9.45476 -9.33591 -9.24353 -8.79291 -8.48048 -8.31266 -7.89232 -7.78241 -6.41266 -4.47433 0.61441 0.85175 1.08477 1.52537 1.81645 1.96200 2.42174 2.65351 2.83602 2.84859 3.12259 3.14059 3.22724 3.24975 3.30870 3.73284 4.19233 4.36519 4.66749 4.83593 4.97082 5.08074 5.25190 5.34155 5.37573 5.44307 5.72088 5.76722 5.82244 5.91283 6.21260 6.33228 6.43178 6.62985 6.76208 6.77616 6.87554 6.99232 7.38619 7.61334 7.64020 7.78225 8.14521 8.26825 8.60315 9.20005 10.67711 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.003294 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.285904 B = 8498.296298 C =11262.999040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.248 3.752 10 N -0.304 5.304 11 C 0.105 3.895 12 C -0.318 4.318 13 C 0.593 3.407 14 O -0.466 6.466 15 N -0.636 5.636 16 C 0.289 3.711 17 N -0.479 5.479 18 C 0.073 3.927 19 C -0.285 4.285 20 S 0.104 5.896 21 C 0.171 3.829 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.142 4.142 25 C -0.252 4.252 26 S 0.228 5.772 27 N -0.249 5.249 28 H 0.269 0.731 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.178 0.822 32 H 0.419 0.581 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -17.479 6.972 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.132 3.868 10 N -0.079 5.079 11 C -0.051 4.051 12 C -0.335 4.335 13 C 0.380 3.620 14 O -0.336 6.336 15 N -0.287 5.287 16 C -0.080 4.080 17 N -0.200 5.200 18 C -0.079 4.079 19 C -0.425 4.425 20 S 0.353 5.647 21 C 0.003 3.997 22 C -0.237 4.237 23 C -0.152 4.152 24 C -0.173 4.173 25 C -0.390 4.390 26 S 0.495 5.505 27 N -0.070 5.070 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.195 0.805 32 H 0.256 0.744 33 H 0.194 0.806 34 H 0.194 0.806 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.655 -16.526 7.411 18.974 hybrid contribution 0.027 0.362 -0.838 0.913 sum 5.682 -16.163 6.574 18.351 Atomic orbital electron populations 1.69912 1.06073 1.27872 1.49134 1.24928 0.95004 0.99669 0.94187 0.86248 0.80164 0.82161 0.77880 1.19385 1.20521 1.20633 1.21222 0.94119 0.88992 1.52982 0.90985 1.20025 0.85594 0.81210 0.99993 1.49320 1.22720 1.18832 1.17060 1.22916 0.97619 0.89200 0.95328 1.20725 1.06421 1.01969 1.04414 1.17553 0.81974 0.84010 0.78424 1.90853 1.25888 1.53593 1.63277 1.43153 1.35239 1.22088 1.28178 1.23776 0.95654 0.93175 0.95372 1.66627 1.17355 1.05384 1.30650 1.21702 1.00096 0.95154 0.90901 1.26734 1.02848 1.05222 1.07744 1.83983 1.34799 1.20415 1.25530 1.20622 0.94161 0.92214 0.92726 1.21752 0.98439 1.07667 0.95809 1.20269 0.98964 1.02241 0.93764 1.19880 0.95138 1.01944 1.00310 1.26112 1.04932 1.09173 0.98739 1.84720 1.09427 1.51089 1.05313 1.77657 1.00695 1.15507 1.13188 0.92145 0.92833 0.92107 0.80466 0.74351 0.80587 0.80553 0.84355 0.84922 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 13.29 55.43 0.74 -23.01 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -13.84 9.20 -34.44 -0.32 -14.16 16 8 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 9 C 0.25 5.64 6.21 -5.19 -0.03 5.61 16 10 N -0.30 -6.21 3.62 -62.03 -0.22 -6.43 16 11 C 0.10 1.69 10.88 -16.63 -0.18 1.51 16 12 C -0.32 -5.49 6.32 -102.92 -0.65 -6.14 16 13 C 0.59 9.56 7.77 -12.63 -0.10 9.46 16 14 O -0.47 -8.54 11.58 5.24 0.06 -8.48 16 15 N -0.64 -7.98 5.39 -14.13 -0.08 -8.06 16 16 C 0.29 3.67 8.01 -87.43 -0.70 2.97 16 17 N -0.48 -6.89 8.65 -15.14 -0.13 -7.02 16 18 C 0.07 0.78 11.34 -19.16 -0.22 0.56 16 19 C -0.29 -2.44 11.35 29.05 0.33 -2.11 16 20 S 0.10 0.94 23.22 -107.50 -2.50 -1.56 16 21 C 0.17 3.37 7.24 -80.68 -0.58 2.79 16 22 C -0.12 -2.13 6.11 -36.92 -0.23 -2.36 16 23 C -0.12 -1.98 10.10 -40.89 -0.41 -2.40 16 24 C -0.14 -2.01 10.16 -41.30 -0.42 -2.43 16 25 C -0.25 -3.49 11.23 29.12 0.33 -3.16 16 26 S 0.23 3.70 19.80 -107.50 -2.13 1.57 16 27 N -0.25 -5.42 12.31 34.50 0.42 -4.99 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.05 1.30 8.14 -51.92 -0.42 0.87 16 30 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 31 H 0.18 1.95 7.48 -52.49 -0.39 1.55 16 32 H 0.42 3.78 7.77 -40.82 -0.32 3.47 16 33 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -32.27 357.91 -9.95 -42.22 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.21 Total: 3.17 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.28 Total: -8.25 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.73 Total: -49.50 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.06 Total: -8.48 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -4.62 Total: 0.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.27 -9.95 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003410491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.390 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds