Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 120.00057 * 2 1 4 4 H 1.48498 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47256 * 300.00549 * 3 2 1 6 6 H 1.48496 * 109.46688 * 60.00316 * 3 2 1 7 7 C 1.37876 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00174 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47045 * 180.02562 * 9 7 2 11 11 C 1.34129 * 125.13362 * 125.00717 * 10 9 7 12 12 C 1.38006 * 107.92650 * 179.97438 * 11 10 9 13 13 C 1.47166 * 126.81735 * 179.97438 * 12 11 10 14 14 O 1.21639 * 120.00170 * 180.02562 * 13 12 11 15 15 N 1.34784 * 120.00062 * 0.02562 * 13 12 11 16 16 C 1.38903 * 120.00032 * 179.97438 * 15 13 12 17 17 N 1.29645 * 124.94622 * 359.70010 * 16 15 13 18 18 C 1.32008 * 116.90677 * 179.76946 * 17 16 15 19 19 C 1.33427 * 114.57291 * 0.51854 * 18 17 16 20 20 S 1.70971 * 124.94549 * 180.02562 * 16 15 13 21 21 C 1.46755 * 106.36568 * 359.97438 * 12 11 10 22 22 C 1.47694 * 126.54285 * 179.97438 * 21 12 11 23 23 C 1.34857 * 125.27273 * 144.99834 * 22 21 12 24 24 C 1.37932 * 114.69649 * 179.70412 * 23 22 21 25 25 C 1.33642 * 115.07207 * 0.27489 * 24 23 22 26 26 S 1.75861 * 109.76221 * 359.97438 * 25 24 23 27 27 N 1.31573 * 106.91551 * 0.22645 * 21 12 11 28 28 H 0.97003 * 119.99696 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46880 * 60.00566 * 9 7 2 30 30 H 1.09004 * 109.47383 * 300.00933 * 9 7 2 31 31 H 1.07998 * 126.03265 * 0.02562 * 11 10 9 32 32 H 0.96997 * 119.99608 * 0.02562 * 15 13 12 33 33 H 1.07996 * 122.71015 * 180.24157 * 18 17 16 34 34 H 1.07994 * 125.97238 * 179.69325 * 19 18 17 35 35 H 1.08002 * 122.65490 * 359.97438 * 23 22 21 36 36 H 1.08001 * 122.46879 * 180.28869 * 24 23 22 37 37 H 1.08000 * 125.11852 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2265 -4.6082 0.8979 12 6 3.2608 -5.4583 0.5632 13 6 3.6580 -6.6857 1.2715 14 8 4.5959 -7.3456 0.8658 15 7 2.9826 -7.0786 2.3697 16 6 3.3572 -8.2373 3.0379 17 7 4.3343 -9.0138 2.6873 18 6 4.5548 -10.0744 3.4418 19 6 3.7179 -10.2057 4.4726 20 16 2.5918 -8.8513 4.4380 21 6 3.8860 -4.8954 -0.6393 22 6 5.0394 -5.4533 -1.3740 23 6 5.2106 -5.4008 -2.7106 24 6 6.3731 -5.9870 -3.1662 25 6 7.1476 -6.5211 -2.2171 26 16 6.4014 -6.2911 -0.6414 27 7 3.2264 -3.7960 -0.9348 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 1.5540 -4.7245 1.7349 32 1 2.2345 -6.5525 2.6930 33 1 5.3457 -10.7811 3.2383 34 1 3.7283 -11.0034 5.2005 35 1 4.4962 -4.9328 -3.3717 36 1 6.6380 -6.0123 -4.2129 37 1 8.0900 -7.0191 -2.3916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003410491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = 118.489561 kcal Electronic energy + Delta-G solvation = -25759.729857 eV Core-core repulsion = 21950.375577 eV Total energy + Delta-G solvation = -3809.354280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.046 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.20305 -41.12748 -39.55040 -38.50805 -35.96934 -35.70907 -33.82377 -31.97990 -30.65566 -30.13287 -28.71020 -26.40173 -25.79284 -24.71003 -23.70471 -22.36956 -21.80755 -20.40929 -20.14128 -19.59652 -18.72705 -18.50550 -17.73624 -17.27169 -17.01468 -16.69800 -16.43114 -16.06706 -15.86327 -15.76773 -15.39745 -14.85437 -14.64838 -14.30284 -14.16311 -14.06850 -13.79862 -13.56273 -13.35774 -13.07408 -12.97882 -12.77349 -12.40715 -12.34293 -12.04413 -11.92726 -11.71045 -11.51564 -11.18963 -10.82947 -10.69327 -10.28028 -10.22583 -9.82663 -9.30590 -9.12577 -9.06309 -8.38376 -6.50673 -0.29319 -0.11574 0.04722 0.58576 0.66275 0.78454 1.22882 1.33833 1.35008 1.38759 1.48794 1.62981 1.89705 1.96598 2.05757 2.32351 2.48960 2.95578 3.27719 3.51304 3.60954 4.03194 4.26211 4.30362 4.32408 4.52098 4.62782 4.64993 4.70748 4.82762 4.90671 4.96865 5.21514 5.22512 5.35301 5.49173 5.52495 5.59651 5.75214 5.93276 6.06265 6.56002 6.69637 6.89105 7.19437 7.20208 8.69914 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.003294 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.285904 B = 8498.296298 C =11262.999040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.263 3.737 10 N -0.327 5.327 11 C 0.122 3.878 12 C -0.323 4.323 13 C 0.594 3.406 14 O -0.492 6.492 15 N -0.625 5.625 16 C 0.248 3.752 17 N -0.521 5.521 18 C 0.043 3.957 19 C -0.265 4.265 20 S 0.168 5.832 21 C 0.164 3.836 22 C -0.155 4.155 23 C -0.121 4.121 24 C -0.148 4.148 25 C -0.232 4.232 26 S 0.211 5.789 27 N -0.299 5.299 28 H 0.274 0.726 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.229 0.771 32 H 0.434 0.566 33 H 0.193 0.807 34 H 0.212 0.788 35 H 0.133 0.867 36 H 0.165 0.835 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -19.039 8.674 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.068 0.932 9 C 0.145 3.855 10 N -0.103 5.103 11 C -0.031 4.031 12 C -0.340 4.340 13 C 0.381 3.619 14 O -0.364 6.364 15 N -0.277 5.277 16 C -0.119 4.119 17 N -0.243 5.243 18 C -0.107 4.107 19 C -0.405 4.405 20 S 0.417 5.583 21 C -0.005 4.005 22 C -0.275 4.275 23 C -0.156 4.156 24 C -0.178 4.178 25 C -0.369 4.369 26 S 0.478 5.522 27 N -0.121 5.121 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.246 0.754 32 H 0.274 0.726 33 H 0.209 0.791 34 H 0.229 0.771 35 H 0.151 0.849 36 H 0.182 0.818 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 5.967 -18.104 9.154 21.146 hybrid contribution -0.025 0.635 -1.291 1.439 sum 5.941 -17.469 7.863 20.057 Atomic orbital electron populations 1.69963 1.06921 1.28778 1.49636 1.25590 0.95761 1.02309 0.93830 0.85409 0.78405 0.78935 0.78368 1.20311 1.20096 1.19250 1.21358 0.93322 0.90937 1.53201 0.93166 1.19624 0.85514 0.80972 0.99360 1.49026 1.23061 1.19695 1.18493 1.23680 0.97354 0.87008 0.95091 1.20951 1.06353 1.02718 1.03977 1.17354 0.81964 0.83417 0.79173 1.90834 1.27050 1.54186 1.64354 1.42793 1.35180 1.22519 1.27245 1.23948 0.97060 0.93479 0.97415 1.66565 1.18542 1.06622 1.32581 1.21977 1.01728 0.95211 0.91776 1.27273 1.01061 1.05266 1.06895 1.83757 1.33123 1.19224 1.22161 1.21063 0.94197 0.91734 0.93486 1.21961 0.99267 1.09574 0.96650 1.20514 0.99804 1.01894 0.93349 1.20142 0.94086 1.01496 1.02047 1.26517 1.05606 1.07831 0.96957 1.84698 1.09151 1.51146 1.07236 1.77554 1.02260 1.17247 1.15037 0.91729 0.95192 0.90683 0.75425 0.72609 0.79066 0.77079 0.84926 0.81752 0.78884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.92 13.29 21.45 0.28 -48.63 16 2 C 0.03 1.39 5.46 84.65 0.46 1.85 16 3 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.55 -29.26 9.20 25.60 0.24 -29.03 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.26 12.28 6.21 85.63 0.53 12.81 16 10 N -0.33 -13.76 3.62 -350.16 -1.27 -15.02 16 11 C 0.12 3.92 10.88 84.29 0.92 4.84 16 12 C -0.32 -11.37 6.32 -18.76 -0.12 -11.48 16 13 C 0.59 19.31 7.77 86.59 0.67 19.99 16 14 O -0.49 -18.42 11.58 -4.15 -0.05 -18.47 16 15 N -0.63 -15.17 5.39 -316.86 -1.71 -16.88 16 16 C 0.25 6.01 8.01 179.23 1.44 7.45 16 17 N -0.52 -14.67 8.65 -201.82 -1.74 -16.41 16 18 C 0.04 0.86 11.34 83.58 0.95 1.81 16 19 C -0.26 -3.68 11.35 66.73 0.76 -2.93 16 20 S 0.17 2.54 23.22 -56.49 -1.31 1.23 16 21 C 0.16 6.75 7.24 43.91 0.32 7.06 16 22 C -0.15 -5.87 6.11 23.99 0.15 -5.72 16 23 C -0.12 -4.13 10.10 21.42 0.22 -3.91 16 24 C -0.15 -4.01 10.16 21.15 0.21 -3.80 16 25 C -0.23 -6.02 11.23 66.78 0.75 -5.27 16 26 S 0.21 6.93 19.80 -56.49 -1.12 5.81 16 27 N -0.30 -13.73 12.31 -44.75 -0.55 -14.28 16 28 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 29 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 3.25 8.05 -2.38 -0.02 3.23 16 31 H 0.23 4.49 7.48 -2.91 -0.02 4.47 16 32 H 0.43 7.11 7.77 -92.71 -0.72 6.39 16 33 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.21 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 36 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.19 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -73.56 357.91 2.48 -71.09 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.43 Total: 13.61 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 7.49 Total: -6.35 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.99 Total: -111.22 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.05 Total: -18.47 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 9.47 SS G_CDS: -2.43 Total: 7.04 kcal Total: -73.56 2.48 -71.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003410491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.575 kcal (2) G-P(sol) polarization free energy of solvation -73.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds