Wall clock time and date at job start Tue Mar 31 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 C 1.52992 * 109.47350 * 120.00427 * 2 1 3 5 5 N 1.46496 * 109.47529 * 174.99848 * 4 2 1 6 6 C 1.46494 * 120.00166 * 269.99996 * 5 4 2 7 7 C 1.50700 * 109.47455 * 269.99915 * 6 5 4 8 8 H 1.08007 * 119.99713 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00271 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99798 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99819 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47411 * 0.02562 * 11 9 7 13 13 H 1.48511 * 109.46987 * 119.99961 * 11 9 7 14 14 H 1.48496 * 109.47342 * 239.99892 * 11 9 7 15 15 C 1.34782 * 119.99749 * 90.00098 * 5 4 2 16 16 S 1.71207 * 119.99753 * 180.02562 * 15 5 4 17 17 N 1.34775 * 120.00278 * 0.27193 * 15 5 4 18 18 C 1.40003 * 120.00141 * 175.52072 * 17 15 5 19 19 C 1.38856 * 120.05670 * 47.30174 * 18 17 15 20 20 C 1.38116 * 119.94883 * 179.67868 * 19 18 17 21 21 C 1.38402 * 120.07833 * 0.61197 * 20 19 18 22 22 Cl 1.73602 * 119.93517 * 179.70152 * 21 20 19 23 23 C 1.38359 * 120.12504 * 359.68598 * 21 20 19 24 24 C 1.38217 * 120.04632 * 359.97438 * 23 21 20 25 25 Cl 1.73606 * 120.04131 * 180.02562 * 24 23 21 26 26 H 1.08997 * 109.47394 * 299.99830 * 1 2 3 27 27 H 1.09002 * 109.47361 * 59.99774 * 1 2 3 28 28 H 1.09003 * 109.47107 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47037 * 240.00431 * 2 1 3 30 30 H 1.08991 * 109.47382 * 299.99861 * 3 2 1 31 31 H 1.09004 * 109.47148 * 60.00698 * 3 2 1 32 32 H 1.09009 * 109.46811 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47432 * 54.99401 * 4 2 1 34 34 H 1.08997 * 109.47136 * 294.99865 * 4 2 1 35 35 H 1.09006 * 109.47241 * 29.99970 * 6 5 4 36 36 H 1.09001 * 109.47363 * 149.99578 * 6 5 4 37 37 H 0.96999 * 119.99832 * 179.97438 * 10 9 7 38 38 H 0.96998 * 119.99495 * 355.52755 * 17 15 5 39 39 H 1.07996 * 120.02382 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.96123 * 180.31837 * 20 19 18 41 41 H 1.08002 * 119.97408 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8265 1.1905 6 6 4.1257 -1.9920 0.5611 7 6 4.3420 -3.0661 1.5957 8 1 4.0436 -2.8972 2.6199 9 6 4.9218 -4.2639 1.2352 10 7 5.2857 -4.4693 -0.0118 11 14 5.1905 -5.5950 2.5179 12 1 4.6976 -5.1194 3.8355 13 1 4.4473 -6.8190 2.1243 14 1 6.6396 -5.9051 2.6135 15 6 4.2675 0.1491 1.7156 16 16 5.9738 0.0265 1.6465 17 7 3.6919 1.2187 2.2995 18 6 4.4863 2.1855 2.9275 19 6 5.6078 2.6900 2.2826 20 6 6.3862 3.6485 2.9015 21 6 6.0568 4.0974 4.1685 22 17 7.0422 5.2967 4.9460 23 6 4.9435 3.5925 4.8165 24 6 4.1569 2.6382 4.1992 25 17 2.7597 2.0052 5.0122 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6053 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.4756 -2.3722 -0.2270 36 1 5.0850 -1.7021 0.1323 37 1 5.6939 -5.3119 -0.2654 38 1 2.7272 1.3186 2.2848 39 1 5.8685 2.3365 1.2960 40 1 7.2556 4.0447 2.3980 41 1 4.6885 3.9448 5.8051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003414950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:18 Heat of formation + Delta-G solvation = 33.017360 kcal Electronic energy + Delta-G solvation = -25596.695302 eV Core-core repulsion = 21882.698456 eV Total energy + Delta-G solvation = -3713.996845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 360.053 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.42792 -38.95130 -36.93452 -36.54494 -35.56559 -34.62775 -32.55260 -31.02589 -29.68802 -27.75712 -27.31689 -26.70191 -23.94452 -23.18979 -22.15185 -21.71622 -19.78382 -18.53630 -17.86694 -16.92408 -16.64673 -15.94528 -15.60601 -14.99820 -14.77851 -14.68877 -14.49918 -14.05769 -13.93650 -13.85978 -13.04146 -12.90654 -12.66765 -12.53080 -12.37645 -12.29048 -12.04653 -11.82875 -11.62026 -11.34875 -11.24738 -11.16007 -11.05072 -11.00023 -10.91084 -10.79101 -10.76046 -10.39980 -10.19579 -9.87714 -9.14264 -8.96684 -8.50783 -8.09082 -7.10111 -6.38078 -6.11809 -4.15622 0.78419 1.09249 1.70521 1.95489 2.13994 2.49643 3.08434 3.27800 3.37050 3.39989 3.44352 3.61207 4.40414 4.62425 4.65790 4.72154 4.88933 4.92507 5.08873 5.14384 5.15871 5.25001 5.40269 5.46532 5.52835 5.64009 5.71513 5.76730 5.77392 5.95420 6.02108 6.06172 6.11213 6.17315 6.29676 6.42471 6.72079 7.00387 7.31270 7.41279 7.79107 7.83143 8.05596 8.83114 9.47930 10.96811 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.003611 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.588307 B = 7752.272134 C = 8952.600942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.156 4.156 4 C 0.092 3.908 5 N -0.524 5.524 6 C 0.237 3.763 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.069 3.931 10 N -0.889 5.889 11 Si 0.899 3.101 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.281 1.281 15 C 0.554 3.446 16 S -0.626 6.626 17 N -0.654 5.654 18 C 0.163 3.837 19 C -0.043 4.043 20 C -0.102 4.102 21 C -0.025 4.025 22 Cl -0.068 7.068 23 C -0.104 4.104 24 C -0.038 4.038 25 Cl -0.060 7.060 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.264 0.736 38 H 0.404 0.596 39 H 0.166 0.834 40 H 0.142 0.858 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 18.001 4.176 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.213 4.213 4 C -0.035 4.035 5 N -0.226 5.226 6 C 0.119 3.881 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.134 4.134 10 N -0.527 5.527 11 Si 0.727 3.273 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.207 1.207 15 C 0.197 3.803 16 S -0.489 6.489 17 N -0.287 5.287 18 C 0.066 3.934 19 C -0.067 4.067 20 C -0.123 4.123 21 C -0.053 4.053 22 Cl -0.039 7.039 23 C -0.125 4.125 24 C -0.068 4.068 25 Cl -0.032 7.032 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.247 0.753 39 H 0.183 0.817 40 H 0.160 0.840 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.360 17.558 4.036 19.461 hybrid contribution -1.236 -0.834 1.043 1.820 sum -8.596 16.724 5.079 19.478 Atomic orbital electron populations 1.21765 0.94144 1.02324 1.01876 1.21594 0.96278 0.96398 0.99333 1.22065 1.01804 0.95811 1.01647 1.22007 0.80995 1.03254 0.97217 1.47919 1.05041 1.19042 1.50566 1.20043 0.95841 0.78957 0.93290 1.21139 1.41428 0.98303 0.95079 0.92470 1.24806 0.94836 0.98260 0.95467 1.69919 1.41106 1.25245 1.16476 0.86421 0.78210 0.81148 0.81529 1.19865 1.21076 1.20663 1.22249 0.95659 0.80701 0.81709 1.93162 0.89683 1.88792 1.77298 1.42535 1.09610 1.20601 1.55978 1.17147 0.94881 0.91244 0.90086 1.21545 0.91790 0.90874 1.02492 1.20991 1.00946 0.97002 0.93406 1.20723 0.94283 0.95646 0.94608 1.98368 1.69478 1.55153 1.80868 1.20531 0.93921 0.97350 1.00720 1.20655 0.93358 1.01048 0.91741 1.98373 1.39923 1.86145 1.78713 0.92702 0.92226 0.92049 0.89611 0.91870 0.93214 0.92101 0.87907 0.91597 0.94246 0.90244 0.92632 0.75333 0.81706 0.84009 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.12 -1.34 3.13 -90.63 -0.28 -1.62 16 3 C -0.16 -1.68 7.75 37.16 0.29 -1.39 16 4 C 0.09 1.29 4.94 -4.05 -0.02 1.27 16 5 N -0.52 -9.81 2.34 -177.09 -0.42 -10.23 16 6 C 0.24 5.61 4.92 -5.20 -0.03 5.59 16 7 C -0.52 -13.88 9.39 -34.44 -0.32 -14.21 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 10 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 11 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.55 10.34 6.12 -86.91 -0.53 9.81 16 16 S -0.63 -14.25 24.40 -107.50 -2.62 -16.87 16 17 N -0.65 -9.56 3.56 -11.36 -0.04 -9.60 16 18 C 0.16 2.30 5.88 -83.63 -0.49 1.81 16 19 C -0.04 -0.60 7.88 -39.40 -0.31 -0.91 16 20 C -0.10 -1.22 9.82 -39.57 -0.39 -1.61 16 21 C -0.02 -0.29 6.32 -39.48 -0.25 -0.54 16 22 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.20 16 23 C -0.10 -1.20 9.61 -39.54 -0.38 -1.58 16 24 C -0.04 -0.48 6.34 -39.33 -0.25 -0.73 16 25 Cl -0.06 -0.72 28.23 -51.86 -1.46 -2.19 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.47 6.84 -51.93 -0.36 0.11 16 32 H 0.06 0.80 6.03 -51.92 -0.31 0.48 16 33 H 0.10 1.51 8.07 -51.93 -0.42 1.09 16 34 H 0.07 0.81 6.42 -51.93 -0.33 0.48 16 35 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 36 H 0.08 2.14 6.58 -51.93 -0.34 1.80 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.40 5.02 4.20 -40.82 -0.17 4.85 16 39 H 0.17 2.52 6.31 -49.70 -0.31 2.21 16 40 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -30.40 373.82 -12.59 -42.98 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.17 Total: 3.74 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.72 Total: -3.25 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.28 Total: -44.44 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -14.25 SS G_CDS: -2.62 Total: -16.87 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -2.97 Total: -4.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.40 -12.59 -42.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003414950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.001 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds