Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 C 1.52992 * 109.47350 * 120.00427 * 2 1 3 5 5 N 1.46496 * 109.47529 * 174.99848 * 4 2 1 6 6 C 1.46494 * 120.00166 * 269.99996 * 5 4 2 7 7 C 1.50700 * 109.47455 * 269.99915 * 6 5 4 8 8 H 1.08007 * 119.99713 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00271 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99798 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99819 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47411 * 0.02562 * 11 9 7 13 13 H 1.48511 * 109.46987 * 119.99961 * 11 9 7 14 14 H 1.48496 * 109.47342 * 239.99892 * 11 9 7 15 15 C 1.34782 * 119.99749 * 90.00098 * 5 4 2 16 16 S 1.71207 * 119.99753 * 180.02562 * 15 5 4 17 17 N 1.34775 * 120.00278 * 0.27193 * 15 5 4 18 18 C 1.40003 * 120.00141 * 175.52072 * 17 15 5 19 19 C 1.38856 * 120.05670 * 47.30174 * 18 17 15 20 20 C 1.38116 * 119.94883 * 179.67868 * 19 18 17 21 21 C 1.38402 * 120.07833 * 0.61197 * 20 19 18 22 22 Cl 1.73602 * 119.93517 * 179.70152 * 21 20 19 23 23 C 1.38359 * 120.12504 * 359.68598 * 21 20 19 24 24 C 1.38217 * 120.04632 * 359.97438 * 23 21 20 25 25 Cl 1.73606 * 120.04131 * 180.02562 * 24 23 21 26 26 H 1.08997 * 109.47394 * 299.99830 * 1 2 3 27 27 H 1.09002 * 109.47361 * 59.99774 * 1 2 3 28 28 H 1.09003 * 109.47107 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47037 * 240.00431 * 2 1 3 30 30 H 1.08991 * 109.47382 * 299.99861 * 3 2 1 31 31 H 1.09004 * 109.47148 * 60.00698 * 3 2 1 32 32 H 1.09009 * 109.46811 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47432 * 54.99401 * 4 2 1 34 34 H 1.08997 * 109.47136 * 294.99865 * 4 2 1 35 35 H 1.09006 * 109.47241 * 29.99970 * 6 5 4 36 36 H 1.09001 * 109.47363 * 149.99578 * 6 5 4 37 37 H 0.96999 * 119.99832 * 179.97438 * 10 9 7 38 38 H 0.96998 * 119.99495 * 355.52755 * 17 15 5 39 39 H 1.07996 * 120.02382 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.96123 * 180.31837 * 20 19 18 41 41 H 1.08002 * 119.97408 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8265 1.1905 6 6 4.1257 -1.9920 0.5611 7 6 4.3420 -3.0661 1.5957 8 1 4.0436 -2.8972 2.6199 9 6 4.9218 -4.2639 1.2352 10 7 5.2857 -4.4693 -0.0118 11 14 5.1905 -5.5950 2.5179 12 1 4.6976 -5.1194 3.8355 13 1 4.4473 -6.8190 2.1243 14 1 6.6396 -5.9051 2.6135 15 6 4.2675 0.1491 1.7156 16 16 5.9738 0.0265 1.6465 17 7 3.6919 1.2187 2.2995 18 6 4.4863 2.1855 2.9275 19 6 5.6078 2.6900 2.2826 20 6 6.3862 3.6485 2.9015 21 6 6.0568 4.0974 4.1685 22 17 7.0422 5.2967 4.9460 23 6 4.9435 3.5925 4.8165 24 6 4.1569 2.6382 4.1992 25 17 2.7597 2.0052 5.0122 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6053 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.4756 -2.3722 -0.2270 36 1 5.0850 -1.7021 0.1323 37 1 5.6939 -5.3119 -0.2654 38 1 2.7272 1.3186 2.2848 39 1 5.8685 2.3365 1.2960 40 1 7.2556 4.0447 2.3980 41 1 4.6885 3.9448 5.8051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003414950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = 19.605801 kcal Electronic energy + Delta-G solvation = -25597.276871 eV Core-core repulsion = 21882.698456 eV Total energy + Delta-G solvation = -3714.578414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 360.053 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.67049 -40.14708 -37.89981 -37.56487 -36.64057 -36.01599 -34.46317 -32.03219 -30.95685 -29.37831 -28.18701 -28.01851 -25.60197 -24.38921 -23.40989 -22.96098 -20.92614 -19.80588 -19.16889 -18.65485 -18.02208 -17.11828 -17.03612 -16.49684 -16.13878 -15.79005 -15.65484 -15.46957 -14.97793 -14.90874 -14.49197 -14.05268 -13.93604 -13.72748 -13.43414 -13.35726 -13.20705 -12.99111 -12.91547 -12.81650 -12.67240 -12.49174 -12.32281 -12.24426 -12.12125 -11.95383 -11.94256 -11.91060 -11.69552 -11.65826 -10.62335 -10.47322 -10.03602 -9.32805 -8.84352 -8.21239 -8.10663 -6.31645 -0.31137 0.08971 0.49200 0.72332 0.95694 1.19045 1.36113 1.40955 1.49328 1.63286 2.22338 2.41046 2.41764 3.12532 3.60524 3.63724 3.71732 3.92114 3.97435 4.05336 4.13343 4.16098 4.44140 4.50131 4.53721 4.71585 4.76926 4.79515 4.84525 4.93945 5.00159 5.05053 5.14341 5.17084 5.18788 5.28093 5.37162 5.49361 5.57392 5.69774 5.89282 6.00332 6.29279 6.72614 7.34938 8.86668 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.003611 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.588307 B = 7752.272134 C = 8952.600942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C -0.153 4.153 4 C 0.086 3.914 5 N -0.527 5.527 6 C 0.258 3.742 7 C -0.525 4.525 8 H 0.047 0.953 9 C 0.021 3.979 10 N -0.920 5.920 11 Si 0.957 3.043 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.286 1.286 15 C 0.579 3.421 16 S -0.716 6.716 17 N -0.628 5.628 18 C 0.138 3.862 19 C -0.052 4.052 20 C -0.100 4.100 21 C -0.021 4.021 22 Cl -0.050 7.050 23 C -0.098 4.098 24 C -0.037 4.037 25 Cl -0.050 7.050 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.034 0.966 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.418 0.582 39 H 0.146 0.854 40 H 0.158 0.842 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 19.504 5.971 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 C -0.210 4.210 4 C -0.039 4.039 5 N -0.228 5.228 6 C 0.137 3.863 7 C -0.564 4.564 8 H 0.066 0.934 9 C -0.179 4.179 10 N -0.559 5.559 11 Si 0.783 3.217 12 H -0.197 1.197 13 H -0.195 1.195 14 H -0.212 1.212 15 C 0.218 3.782 16 S -0.582 6.582 17 N -0.261 5.261 18 C 0.042 3.958 19 C -0.075 4.075 20 C -0.120 4.120 21 C -0.049 4.049 22 Cl -0.021 7.021 23 C -0.119 4.119 24 C -0.067 4.067 25 Cl -0.021 7.021 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.263 0.737 39 H 0.163 0.837 40 H 0.175 0.825 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.416 19.131 5.863 22.114 hybrid contribution -0.660 -1.134 0.534 1.416 sum -10.076 17.997 6.397 21.595 Atomic orbital electron populations 1.21735 0.91449 1.02842 1.03450 1.21538 0.98299 0.96210 0.96881 1.22039 0.99936 0.95567 1.03461 1.22358 0.77786 1.04018 0.99706 1.47687 1.06981 1.17874 1.50231 1.19411 0.94396 0.79840 0.92639 1.21334 1.40962 0.99149 0.94998 0.93445 1.25558 0.94749 1.00405 0.97151 1.70015 1.41997 1.25896 1.18030 0.85517 0.77734 0.79146 0.79286 1.19677 1.19511 1.21202 1.21643 0.93856 0.81433 0.81287 1.93301 0.94008 1.90494 1.80405 1.42303 1.10237 1.19211 1.54337 1.17314 0.95543 0.91817 0.91098 1.21397 0.92299 0.91835 1.02017 1.21148 1.00884 0.96291 0.93709 1.20803 0.94289 0.95521 0.94308 1.98381 1.68992 1.54316 1.80440 1.20802 0.93251 0.96390 1.01409 1.20683 0.93830 1.01047 0.91188 1.98377 1.39309 1.86076 1.78365 0.90900 0.90879 0.92125 0.91758 0.90216 0.91278 0.94938 0.88351 0.89137 0.94791 0.93874 0.92490 0.73749 0.83675 0.82473 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.19 71.98 0.66 -1.42 16 2 C -0.11 -2.39 3.13 -10.80 -0.03 -2.42 16 3 C -0.15 -3.05 7.75 71.98 0.56 -2.49 16 4 C 0.09 2.34 4.94 86.38 0.43 2.77 16 5 N -0.53 -20.10 2.34 -714.20 -1.67 -21.77 16 6 C 0.26 12.70 4.92 85.63 0.42 13.12 16 7 C -0.53 -28.67 9.39 25.60 0.24 -28.43 16 8 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 9 C 0.02 1.19 5.46 84.66 0.46 1.65 16 10 N -0.92 -53.71 13.29 21.45 0.28 -53.43 16 11 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 15 C 0.58 22.05 6.12 179.05 1.10 23.14 16 16 S -0.72 -34.24 24.40 -56.49 -1.38 -35.62 16 17 N -0.63 -17.99 3.56 -189.86 -0.68 -18.67 16 18 C 0.14 3.80 5.88 38.15 0.22 4.03 16 19 C -0.05 -1.46 7.88 22.39 0.18 -1.29 16 20 C -0.10 -2.30 9.82 22.28 0.22 -2.08 16 21 C -0.02 -0.45 6.32 22.34 0.14 -0.31 16 22 Cl -0.05 -0.92 28.95 -2.72 -0.08 -0.99 16 23 C -0.10 -2.02 9.61 22.29 0.21 -1.80 16 24 C -0.04 -0.89 6.34 22.44 0.14 -0.75 16 25 Cl -0.05 -1.08 28.23 -2.72 -0.08 -1.15 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.09 6.84 -2.39 -0.02 1.08 16 32 H 0.03 0.84 6.03 -2.38 -0.01 0.82 16 33 H 0.10 2.81 8.07 -2.39 -0.02 2.79 16 34 H 0.09 2.01 6.42 -2.39 -0.02 1.99 16 35 H 0.03 1.70 8.07 -2.38 -0.02 1.69 16 36 H 0.04 2.47 6.58 -2.39 -0.02 2.46 16 37 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.42 9.61 4.20 -92.71 -0.39 9.22 16 39 H 0.15 4.71 6.31 -4.68 -0.03 4.68 16 40 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 41 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -68.36 373.82 4.04 -64.32 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.66 Total: 16.86 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 4.95 Total: 3.72 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -2.06 Total: -93.87 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -34.24 SS G_CDS: -1.38 Total: -35.62 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.16 Total: -2.15 kcal Total: -68.36 4.04 -64.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003414950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.922 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds