Wall clock time and date at job start Tue Mar 31 2020 06:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86806 * 119.99834 * 2 1 4 4 H 1.48492 * 109.47181 * 240.00167 * 3 2 1 5 5 H 1.48503 * 109.46964 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46835 * 120.00216 * 3 2 1 7 7 C 1.40119 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00553 * 179.97438 * 7 2 1 9 9 C 1.46201 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.21726 * 119.99886 * 0.02562 * 9 7 2 11 11 N 1.34772 * 120.00444 * 179.97438 * 9 7 2 12 12 C 1.39070 * 120.00131 * 185.28224 * 11 9 7 13 13 C 1.39272 * 119.93295 * 33.64979 * 12 11 9 14 14 C 1.37614 * 120.06817 * 180.02562 * 13 12 11 15 15 C 1.39840 * 119.93017 * 359.97438 * 14 13 12 16 16 C 1.47457 * 120.06364 * 180.02562 * 15 14 13 17 17 O 1.21504 * 120.00186 * 359.97438 * 16 15 14 18 18 O 1.34753 * 120.00068 * 180.02562 * 16 15 14 19 19 C 1.45195 * 117.00467 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47499 * 179.97438 * 19 18 16 21 21 O 1.21278 * 119.99629 * 359.97438 * 20 19 18 22 22 N 1.34770 * 120.00161 * 179.97438 * 20 19 18 23 23 C 1.46503 * 119.99842 * 179.97438 * 22 20 19 24 24 C 1.54261 * 110.03370 * 87.09874 * 23 22 20 25 25 C 1.54969 * 104.16559 * 95.74978 * 24 23 22 26 26 C 1.54891 * 102.77128 * 37.89050 * 25 24 23 27 27 C 1.53881 * 110.02952 * 204.31225 * 23 22 20 28 28 C 1.39839 * 119.86307 * 0.27616 * 15 14 13 29 29 C 1.37603 * 119.93200 * 359.46791 * 28 15 14 30 30 H 0.96993 * 120.00476 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99671 * 5.28227 * 11 9 7 32 32 H 1.07997 * 119.96767 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.03473 * 179.97438 * 14 13 12 34 34 H 1.08996 * 109.47260 * 59.99343 * 19 18 16 35 35 H 1.09009 * 109.46756 * 299.99840 * 19 18 16 36 36 H 0.97004 * 120.00073 * 0.02562 * 22 20 19 37 37 H 1.08992 * 110.01897 * 325.70110 * 23 22 20 38 38 H 1.08997 * 110.48970 * 214.40251 * 24 23 22 39 39 H 1.09008 * 110.48536 * 337.04307 * 24 23 22 40 40 H 1.09002 * 110.72051 * 279.58008 * 25 24 23 41 41 H 1.08994 * 110.92282 * 156.29642 * 25 24 23 42 42 H 1.08998 * 110.48471 * 203.40727 * 26 25 24 43 43 H 1.08993 * 110.59821 * 80.81977 * 26 25 24 44 44 H 1.09000 * 110.03226 * 359.95399 * 27 23 22 45 45 H 1.09003 * 110.02884 * 121.38803 * 27 23 22 46 46 H 1.07998 * 120.02903 * 179.70150 * 28 15 14 47 47 H 1.08000 * 119.96422 * 180.25079 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0071 -1.2134 -0.0005 8 1 3.0871 -1.2134 -0.0010 9 6 1.2762 -2.4796 -0.0005 10 8 0.0589 -2.4797 -0.0005 11 7 1.9500 -3.6468 -0.0016 12 6 1.2591 -4.8486 -0.1125 13 6 0.0983 -4.9146 -0.8792 14 6 -0.5879 -6.1023 -0.9904 15 6 -0.1183 -7.2436 -0.3330 16 6 -0.8510 -8.5179 -0.4506 17 8 -1.8640 -8.5768 -1.1188 18 8 -0.3975 -9.6169 0.1839 19 6 -1.1695 -10.8361 0.0240 20 6 -0.5148 -11.9506 0.7987 21 8 0.5027 -11.7383 1.4237 22 7 -1.0598 -13.1832 0.7970 23 6 -0.4229 -14.2668 1.5497 24 6 -0.9274 -14.2651 3.0075 25 6 -2.0769 -15.3044 3.0122 26 6 -1.5456 -16.4069 2.0629 27 6 -0.8161 -15.6278 0.9490 28 6 1.0446 -7.1728 0.4404 29 6 1.7293 -5.9836 0.5434 30 1 -0.4850 0.8399 0.0004 31 1 2.9170 -3.6485 0.0750 32 1 -0.2642 -4.0327 -1.3863 33 1 -1.4882 -6.1528 -1.5848 34 1 -1.2115 -11.1038 -1.0318 35 1 -2.1807 -10.6777 0.3990 36 1 -1.8734 -13.3531 0.2968 37 1 0.6604 -14.1487 1.5293 38 1 -0.1323 -14.5728 3.6867 39 1 -1.3028 -13.2787 3.2802 40 1 -2.9946 -14.8661 2.6199 41 1 -2.2380 -15.7021 4.0142 42 1 -2.3722 -16.9829 1.6469 43 1 -0.8509 -17.0626 2.5876 44 1 -1.4814 -15.4821 0.0980 45 1 0.0765 -16.1702 0.6372 46 1 1.4071 -8.0514 0.9531 47 1 2.6297 -5.9293 1.1373 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003429330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:39 Heat of formation + Delta-G solvation = -141.902604 kcal Electronic energy + Delta-G solvation = -30167.284727 eV Core-core repulsion = 25700.506691 eV Total energy + Delta-G solvation = -4466.778036 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.73112 -40.05921 -39.13172 -38.07370 -36.98489 -36.16842 -34.02099 -33.65019 -32.57609 -30.62506 -30.14444 -29.26027 -29.18533 -27.35040 -26.44000 -23.58611 -22.45410 -21.73045 -21.07856 -20.81776 -20.42487 -19.88771 -18.14469 -17.73805 -17.37030 -16.96526 -16.72305 -16.57301 -16.12833 -15.83637 -15.57481 -15.01187 -14.92375 -14.48893 -14.23782 -14.05189 -13.87214 -13.74091 -13.24675 -13.14220 -12.97350 -12.68116 -12.61423 -12.27450 -12.13682 -12.01454 -11.87928 -11.67944 -11.54579 -11.38248 -11.37230 -11.13626 -11.12887 -10.88089 -10.80449 -10.67585 -10.46513 -10.43306 -10.11075 -9.50510 -9.49386 -8.99028 -8.61076 -7.89536 -7.30754 -6.43914 -4.92328 1.12174 1.88277 2.11984 2.22547 2.80887 3.04872 3.10008 3.11799 3.16287 3.91518 3.99279 4.10404 4.13356 4.30016 4.38903 4.42401 4.46945 4.76384 4.79806 4.87943 4.92682 4.98382 5.00352 5.11953 5.15075 5.28116 5.28427 5.38644 5.39137 5.52481 5.53088 5.63473 5.72714 5.78276 5.80446 5.91902 6.08705 6.11142 6.24955 6.46163 6.61359 6.83681 6.90189 7.01368 7.16839 7.21931 7.58962 7.79900 7.87108 7.89134 8.02795 8.75305 9.04792 10.25171 10.46014 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.032658 B = 0.001413 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.161896 B =19804.885611 C =20136.285722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.538 3.462 10 O -0.554 6.554 11 N -0.693 5.693 12 C 0.238 3.762 13 C -0.148 4.148 14 C -0.027 4.027 15 C -0.189 4.189 16 C 0.520 3.480 17 O -0.520 6.520 18 O -0.331 6.331 19 C 0.049 3.951 20 C 0.516 3.484 21 O -0.512 6.512 22 N -0.723 5.723 23 C 0.141 3.859 24 C -0.135 4.135 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.131 4.131 28 C -0.032 4.032 29 C -0.196 4.196 30 H 0.274 0.726 31 H 0.397 0.603 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.401 0.599 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.133 0.867 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 -28.844 1.601 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.335 5.335 12 C 0.136 3.864 13 C -0.169 4.169 14 C -0.046 4.046 15 C -0.191 4.191 16 C 0.367 3.633 17 O -0.411 6.411 18 O -0.247 6.247 19 C -0.029 4.029 20 C 0.301 3.699 21 O -0.386 6.386 22 N -0.378 5.378 23 C 0.037 3.963 24 C -0.174 4.174 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.169 4.169 28 C -0.051 4.051 29 C -0.217 4.217 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.166 0.834 33 H 0.149 0.851 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.236 0.764 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.151 0.849 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.145 -28.447 1.863 28.589 hybrid contribution 0.343 0.616 -0.192 0.731 sum -1.802 -27.831 1.671 27.939 Atomic orbital electron populations 1.69958 1.07198 1.28174 1.33039 1.25753 0.94737 1.00609 0.92483 0.86304 0.79794 0.80353 0.79671 1.19043 1.20317 1.19066 1.20841 0.93891 0.88866 1.53535 0.90833 1.18465 0.87566 0.82017 0.77446 1.90659 1.13566 1.85852 1.53512 1.44313 1.10090 1.04526 1.74550 1.18312 0.92160 0.86462 0.89452 1.21290 0.96779 0.98180 1.00654 1.21036 0.97991 0.90350 0.95260 1.18704 1.00092 0.90453 1.09894 1.21370 0.82726 0.83653 0.75523 1.90802 1.25181 1.85443 1.39643 1.86636 1.52664 1.17480 1.67962 1.22574 0.95657 0.83058 1.01633 1.20152 0.84937 0.83294 0.81538 1.90765 1.23554 1.82156 1.42100 1.46025 1.29850 1.09094 1.52838 1.21639 0.98561 0.85325 0.90788 1.22815 0.98520 0.99994 0.96081 1.22542 0.98115 0.95979 0.99749 1.22375 0.99840 0.97665 0.96387 1.22468 1.01170 0.94586 0.98669 1.21103 0.92251 0.97493 0.94259 1.20873 1.03729 0.92912 1.04219 0.91480 0.76874 0.83437 0.85107 0.88210 0.88189 0.76425 0.88935 0.90564 0.90986 0.91479 0.91337 0.91368 0.91255 0.90890 0.90539 0.84886 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.35 11.82 55.55 0.66 -20.69 16 2 C 0.09 2.25 5.50 -17.36 -0.10 2.15 16 3 Si 0.91 18.94 29.56 -169.99 -5.02 13.92 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.54 -14.08 9.54 -35.68 -0.34 -14.42 16 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 9 C 0.54 14.31 7.46 -13.07 -0.10 14.21 16 10 O -0.55 -16.69 12.69 5.17 0.07 -16.62 16 11 N -0.69 -14.77 5.30 -11.19 -0.06 -14.83 16 12 C 0.24 4.77 6.27 -83.81 -0.53 4.24 16 13 C -0.15 -3.06 8.62 -39.42 -0.34 -3.40 16 14 C -0.03 -0.50 9.58 -39.21 -0.38 -0.87 16 15 C -0.19 -3.23 5.88 -104.94 -0.62 -3.84 16 16 C 0.52 8.39 7.89 34.49 0.27 8.66 16 17 O -0.52 -9.01 16.13 -19.27 -0.31 -9.32 16 18 O -0.33 -4.78 9.00 -47.32 -0.43 -5.21 16 19 C 0.05 0.50 5.95 36.01 0.21 0.71 16 20 C 0.52 5.37 7.90 -10.99 -0.09 5.29 16 21 O -0.51 -7.55 16.17 -14.10 -0.23 -7.78 16 22 N -0.72 -4.82 5.04 -52.72 -0.27 -5.08 16 23 C 0.14 0.92 3.23 -66.81 -0.22 0.70 16 24 C -0.14 -0.88 6.54 -25.03 -0.16 -1.04 16 25 C -0.13 -0.59 6.91 -24.69 -0.17 -0.76 16 26 C -0.12 -0.48 6.83 -25.07 -0.17 -0.65 16 27 C -0.13 -0.54 6.57 -25.61 -0.17 -0.71 16 28 C -0.03 -0.51 9.60 -39.21 -0.38 -0.89 16 29 C -0.20 -3.28 9.94 -39.43 -0.39 -3.67 16 30 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 31 H 0.40 7.09 8.79 -40.82 -0.36 6.73 16 32 H 0.15 3.44 6.41 -52.49 -0.34 3.11 16 33 H 0.13 2.26 7.64 -52.49 -0.40 1.86 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.40 1.51 8.31 -40.82 -0.34 1.17 16 37 H 0.09 0.77 7.59 -51.93 -0.39 0.38 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.59 8.04 -51.92 -0.42 0.17 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.24 7.61 -51.93 -0.40 -0.16 16 45 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.13 1.90 7.60 -52.49 -0.40 1.50 16 47 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -35.11 402.56 -9.57 -44.68 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.39 Total: 9.16 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -3.65 Total: 5.70 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.33 Total: -40.60 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.90 Total: -38.93 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.11 -9.57 -44.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003429330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.221 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds