Wall clock time and date at job start Tue Mar 31 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86806 * 119.99834 * 2 1 4 4 H 1.48492 * 109.47181 * 240.00167 * 3 2 1 5 5 H 1.48503 * 109.46964 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46835 * 120.00216 * 3 2 1 7 7 C 1.40119 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00553 * 179.97438 * 7 2 1 9 9 C 1.46201 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.21726 * 119.99886 * 0.02562 * 9 7 2 11 11 N 1.34772 * 120.00444 * 179.97438 * 9 7 2 12 12 C 1.39070 * 120.00131 * 185.28224 * 11 9 7 13 13 C 1.39272 * 119.93295 * 33.64979 * 12 11 9 14 14 C 1.37614 * 120.06817 * 180.02562 * 13 12 11 15 15 C 1.39840 * 119.93017 * 359.97438 * 14 13 12 16 16 C 1.47457 * 120.06364 * 180.02562 * 15 14 13 17 17 O 1.21504 * 120.00186 * 359.97438 * 16 15 14 18 18 O 1.34753 * 120.00068 * 180.02562 * 16 15 14 19 19 C 1.45195 * 117.00467 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47499 * 179.97438 * 19 18 16 21 21 O 1.21278 * 119.99629 * 359.97438 * 20 19 18 22 22 N 1.34770 * 120.00161 * 179.97438 * 20 19 18 23 23 C 1.46503 * 119.99842 * 179.97438 * 22 20 19 24 24 C 1.54261 * 110.03370 * 87.09874 * 23 22 20 25 25 C 1.54969 * 104.16559 * 95.74978 * 24 23 22 26 26 C 1.54891 * 102.77128 * 37.89050 * 25 24 23 27 27 C 1.53881 * 110.02952 * 204.31225 * 23 22 20 28 28 C 1.39839 * 119.86307 * 0.27616 * 15 14 13 29 29 C 1.37603 * 119.93200 * 359.46791 * 28 15 14 30 30 H 0.96993 * 120.00476 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99671 * 5.28227 * 11 9 7 32 32 H 1.07997 * 119.96767 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.03473 * 179.97438 * 14 13 12 34 34 H 1.08996 * 109.47260 * 59.99343 * 19 18 16 35 35 H 1.09009 * 109.46756 * 299.99840 * 19 18 16 36 36 H 0.97004 * 120.00073 * 0.02562 * 22 20 19 37 37 H 1.08992 * 110.01897 * 325.70110 * 23 22 20 38 38 H 1.08997 * 110.48970 * 214.40251 * 24 23 22 39 39 H 1.09008 * 110.48536 * 337.04307 * 24 23 22 40 40 H 1.09002 * 110.72051 * 279.58008 * 25 24 23 41 41 H 1.08994 * 110.92282 * 156.29642 * 25 24 23 42 42 H 1.08998 * 110.48471 * 203.40727 * 26 25 24 43 43 H 1.08993 * 110.59821 * 80.81977 * 26 25 24 44 44 H 1.09000 * 110.03226 * 359.95399 * 27 23 22 45 45 H 1.09003 * 110.02884 * 121.38803 * 27 23 22 46 46 H 1.07998 * 120.02903 * 179.70150 * 28 15 14 47 47 H 1.08000 * 119.96422 * 180.25079 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0071 -1.2134 -0.0005 8 1 3.0871 -1.2134 -0.0010 9 6 1.2762 -2.4796 -0.0005 10 8 0.0589 -2.4797 -0.0005 11 7 1.9500 -3.6468 -0.0016 12 6 1.2591 -4.8486 -0.1125 13 6 0.0983 -4.9146 -0.8792 14 6 -0.5879 -6.1023 -0.9904 15 6 -0.1183 -7.2436 -0.3330 16 6 -0.8510 -8.5179 -0.4506 17 8 -1.8640 -8.5768 -1.1188 18 8 -0.3975 -9.6169 0.1839 19 6 -1.1695 -10.8361 0.0240 20 6 -0.5148 -11.9506 0.7987 21 8 0.5027 -11.7383 1.4237 22 7 -1.0598 -13.1832 0.7970 23 6 -0.4229 -14.2668 1.5497 24 6 -0.9274 -14.2651 3.0075 25 6 -2.0769 -15.3044 3.0122 26 6 -1.5456 -16.4069 2.0629 27 6 -0.8161 -15.6278 0.9490 28 6 1.0446 -7.1728 0.4404 29 6 1.7293 -5.9836 0.5434 30 1 -0.4850 0.8399 0.0004 31 1 2.9170 -3.6485 0.0750 32 1 -0.2642 -4.0327 -1.3863 33 1 -1.4882 -6.1528 -1.5848 34 1 -1.2115 -11.1038 -1.0318 35 1 -2.1807 -10.6777 0.3990 36 1 -1.8734 -13.3531 0.2968 37 1 0.6604 -14.1487 1.5293 38 1 -0.1323 -14.5728 3.6867 39 1 -1.3028 -13.2787 3.2802 40 1 -2.9946 -14.8661 2.6199 41 1 -2.2380 -15.7021 4.0142 42 1 -2.3722 -16.9829 1.6469 43 1 -0.8509 -17.0626 2.5876 44 1 -1.4814 -15.4821 0.0980 45 1 0.0765 -16.1702 0.6372 46 1 1.4071 -8.0514 0.9531 47 1 2.6297 -5.9293 1.1373 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003429330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:38 Heat of formation + Delta-G solvation = -164.401830 kcal Electronic energy + Delta-G solvation = -30168.260367 eV Core-core repulsion = 25700.506691 eV Total energy + Delta-G solvation = -4467.753675 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.84553 -41.05674 -40.61024 -38.86444 -38.55775 -37.38761 -35.43184 -34.70384 -34.57466 -32.05259 -31.44523 -30.27753 -29.64681 -28.52001 -27.82655 -25.04401 -23.91917 -22.58397 -22.23882 -21.56909 -21.38612 -21.01848 -19.60078 -19.20074 -18.46354 -18.09713 -17.82872 -17.62529 -17.49687 -17.22552 -16.43104 -16.13160 -15.84013 -15.81117 -15.68154 -15.32690 -14.87186 -14.72494 -14.59653 -14.35103 -14.25708 -14.09037 -13.96037 -13.50006 -13.48013 -13.13989 -12.77273 -12.76697 -12.73341 -12.68699 -12.19915 -12.08116 -12.01677 -11.97411 -11.91805 -11.83467 -11.75320 -11.47291 -11.17750 -11.00393 -10.90440 -10.16703 -10.13765 -9.85985 -8.96433 -8.39247 -6.97663 -0.30695 0.43730 1.15762 1.37437 1.41110 1.41915 1.48913 1.56003 2.19938 2.29806 2.35114 2.76696 2.87134 3.50795 3.53303 3.64704 3.68481 3.71219 3.89744 3.98735 4.00005 4.04332 4.06456 4.34811 4.45246 4.45641 4.52160 4.56388 4.64467 4.68183 4.76538 4.86276 4.98683 5.03190 5.06048 5.07406 5.23052 5.24437 5.24811 5.29672 5.35730 5.37570 5.45482 5.55407 5.66510 5.76342 6.11879 6.23177 6.38307 6.62747 6.75602 7.10172 7.24833 8.28778 8.53536 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.032658 B = 0.001413 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.161896 B =19804.885611 C =20136.285722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.031 3.969 3 Si 1.001 2.999 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.562 4.562 8 H 0.097 0.903 9 C 0.526 3.474 10 O -0.602 6.602 11 N -0.686 5.686 12 C 0.210 3.790 13 C -0.168 4.168 14 C -0.029 4.029 15 C -0.186 4.186 16 C 0.528 3.472 17 O -0.533 6.533 18 O -0.338 6.338 19 C 0.042 3.958 20 C 0.518 3.482 21 O -0.562 6.562 22 N -0.703 5.703 23 C 0.137 3.863 24 C -0.137 4.137 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.022 4.022 29 C -0.177 4.177 30 H 0.279 0.721 31 H 0.413 0.587 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.418 0.582 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.160 0.840 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -30.979 1.852 31.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.186 4.186 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.597 4.597 8 H 0.115 0.885 9 C 0.333 3.667 10 O -0.487 6.487 11 N -0.329 5.329 12 C 0.110 3.890 13 C -0.189 4.189 14 C -0.048 4.048 15 C -0.188 4.188 16 C 0.376 3.624 17 O -0.425 6.425 18 O -0.254 6.254 19 C -0.034 4.034 20 C 0.304 3.696 21 O -0.440 6.440 22 N -0.357 5.357 23 C 0.033 3.967 24 C -0.176 4.176 25 C -0.160 4.160 26 C -0.159 4.159 27 C -0.162 4.162 28 C -0.040 4.040 29 C -0.198 4.198 30 H 0.089 0.911 31 H 0.250 0.750 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.256 0.744 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.177 0.823 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.220 -30.685 2.100 30.781 hybrid contribution -0.005 1.005 -0.258 1.038 sum -1.225 -29.680 1.842 29.762 Atomic orbital electron populations 1.70125 1.09579 1.29574 1.34656 1.26995 0.95529 1.05004 0.91083 0.85015 0.78189 0.74420 0.80423 1.17725 1.19996 1.17677 1.21410 0.95198 0.89368 1.53759 0.88531 1.18793 0.87243 0.83732 0.76914 1.90621 1.15559 1.87008 1.55516 1.43796 1.10726 1.03834 1.74554 1.18516 0.92504 0.87016 0.90939 1.21053 0.98105 0.97827 1.01929 1.21005 0.98009 0.90142 0.95625 1.18885 1.00329 0.90654 1.08962 1.21031 0.82223 0.83825 0.75362 1.90798 1.25672 1.85771 1.40221 1.86587 1.53283 1.18207 1.67312 1.22937 0.95943 0.81292 1.03268 1.20225 0.84316 0.84161 0.80914 1.90749 1.25778 1.83020 1.44404 1.45906 1.29934 1.07934 1.51970 1.21724 0.97462 0.86397 0.91139 1.22795 0.99222 0.99603 0.95972 1.22527 0.97420 0.95668 1.00377 1.22369 1.00217 0.97332 0.95950 1.22446 1.01800 0.92855 0.99118 1.21379 0.91334 0.97992 0.93334 1.21131 1.04270 0.91543 1.02886 0.91138 0.74992 0.87194 0.84702 0.85884 0.86257 0.74397 0.91033 0.90916 0.92921 0.91038 0.91024 0.90055 0.91062 0.89406 0.90019 0.82283 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.53 11.82 21.85 0.26 -47.27 16 2 C 0.03 1.63 5.50 85.33 0.47 2.10 16 3 Si 1.00 38.78 29.56 68.60 2.03 40.80 16 4 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 5 H -0.28 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.56 -30.00 9.54 24.80 0.24 -29.76 16 8 H 0.10 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.53 29.05 7.46 86.31 0.64 29.69 16 10 O -0.60 -38.32 12.69 -4.43 -0.06 -38.38 16 11 N -0.69 -29.76 5.30 -307.51 -1.63 -31.39 16 12 C 0.21 8.54 6.27 38.49 0.24 8.79 16 13 C -0.17 -7.31 8.62 22.37 0.19 -7.12 16 14 C -0.03 -1.08 9.58 22.51 0.22 -0.86 16 15 C -0.19 -6.17 5.88 -20.07 -0.12 -6.29 16 16 C 0.53 16.23 7.89 70.25 0.55 16.78 16 17 O -0.53 -17.70 16.13 19.82 0.32 -17.38 16 18 O -0.34 -9.11 9.00 -50.25 -0.45 -9.56 16 19 C 0.04 0.78 5.95 71.24 0.42 1.20 16 20 C 0.52 10.08 7.90 87.66 0.69 10.77 16 21 O -0.56 -16.31 16.17 15.77 0.26 -16.06 16 22 N -0.70 -8.08 5.04 -439.11 -2.21 -10.29 16 23 C 0.14 1.62 3.23 45.72 0.15 1.76 16 24 C -0.14 -1.69 6.54 31.70 0.21 -1.48 16 25 C -0.12 -0.93 6.91 31.91 0.22 -0.71 16 26 C -0.12 -0.62 6.83 31.67 0.22 -0.40 16 27 C -0.12 -0.73 6.57 31.32 0.21 -0.53 16 28 C -0.02 -0.65 9.60 22.51 0.22 -0.43 16 29 C -0.18 -5.64 9.94 22.37 0.22 -5.42 16 30 H 0.28 14.84 8.29 -92.71 -0.77 14.07 16 31 H 0.41 14.64 8.79 -92.71 -0.81 13.83 16 32 H 0.11 5.61 6.41 -2.91 -0.02 5.59 16 33 H 0.14 4.82 7.64 -2.91 -0.02 4.80 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.42 1.98 8.31 -92.71 -0.77 1.21 16 37 H 0.07 1.18 7.59 -2.39 -0.02 1.16 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.85 8.04 -2.38 -0.02 0.83 16 40 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.09 0.28 7.61 -2.39 -0.02 0.26 16 45 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.16 4.03 7.60 -2.91 -0.02 4.01 16 47 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -80.57 402.56 2.95 -77.63 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -0.55 Total: 33.81 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 4.99 Total: 18.09 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -3.58 Total: -88.95 kcal Atomic # 8 Polarization: -81.45 SS G_CDS: 0.07 Total: -81.38 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.80 kcal Total: -80.57 2.95 -77.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003429330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.777 kcal (2) G-P(sol) polarization free energy of solvation -80.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds