Wall clock time and date at job start Tue Mar 31 2020 07:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47080 * 270.00225 * 3 2 1 5 5 H 1.48505 * 109.46978 * 30.00126 * 3 2 1 6 6 H 1.48494 * 109.47250 * 150.00052 * 3 2 1 7 7 C 1.37878 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99698 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00021 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47082 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00115 * 269.99989 * 10 9 7 12 12 O 1.21289 * 119.99585 * 4.45849 * 11 10 9 13 13 C 1.50697 * 120.00124 * 184.45604 * 11 10 9 14 14 S 1.81404 * 109.47176 * 174.35687 * 13 11 10 15 15 C 1.76200 * 102.99796 * 179.97438 * 14 13 11 16 16 C 1.38953 * 120.07130 * 359.72597 * 15 14 13 17 17 C 1.38085 * 119.93388 * 179.78638 * 16 15 14 18 18 C 1.38398 * 120.06439 * 0.48974 * 17 16 15 19 19 Cl 1.73603 * 119.93193 * 179.71806 * 18 17 16 20 20 C 1.38397 * 120.13607 * 359.74592 * 18 17 16 21 21 C 1.38080 * 120.06643 * 0.02562 * 20 18 17 22 22 C 1.39922 * 120.00092 * 89.99842 * 10 9 7 23 23 C 1.38872 * 120.07153 * 246.79332 * 22 10 9 24 24 C 1.38117 * 119.92996 * 180.23004 * 23 22 10 25 25 C 1.38280 * 120.06918 * 359.47437 * 24 23 22 26 26 C 1.38288 * 120.14015 * 0.54667 * 25 24 23 27 27 C 1.38109 * 120.06953 * 359.70609 * 26 25 24 28 28 H 0.97006 * 119.99798 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47445 * 59.99781 * 9 7 2 30 30 H 1.08997 * 109.47442 * 299.99810 * 9 7 2 31 31 H 1.08997 * 109.47556 * 294.36009 * 13 11 10 32 32 H 1.08999 * 109.47263 * 54.36069 * 13 11 10 33 33 H 1.08004 * 120.03319 * 0.02562 * 16 15 14 34 34 H 1.07996 * 119.96630 * 180.20872 * 17 16 15 35 35 H 1.07996 * 119.96128 * 180.02562 * 20 18 17 36 36 H 1.08002 * 120.03631 * 179.97438 * 21 20 18 37 37 H 1.07997 * 120.03650 * 359.95232 * 23 22 10 38 38 H 1.07999 * 119.96379 * 179.72487 * 24 23 22 39 39 H 1.07996 * 119.93179 * 180.25816 * 25 24 23 40 40 H 1.07999 * 119.96272 * 179.73004 * 26 25 24 41 41 H 1.08003 * 120.03281 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 4.2249 -3.2103 1.1663 12 8 3.9471 -2.6681 2.2150 13 6 4.8218 -4.5941 1.1683 14 16 5.1546 -5.1065 2.8763 15 6 5.8364 -6.7194 2.6805 16 6 5.9815 -7.2645 1.4106 17 6 6.5203 -8.5270 1.2601 18 6 6.9062 -9.2533 2.3731 19 17 7.5763 -10.8432 2.1803 20 6 6.7584 -8.7151 3.6395 21 6 6.2246 -7.4513 3.7962 22 6 4.2326 -3.2351 -1.2127 23 6 3.4437 -4.3181 -1.5779 24 6 3.6791 -4.9703 -2.7725 25 6 4.6919 -4.5392 -3.6094 26 6 5.4794 -3.4614 -3.2484 27 6 5.2526 -2.8082 -2.0529 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 4.1219 -5.2924 0.7093 32 1 5.7534 -4.5888 0.6025 33 1 5.6768 -6.6997 0.5419 34 1 6.6364 -8.9498 0.2731 35 1 7.0608 -9.2843 4.5061 36 1 6.1091 -7.0319 4.7847 37 1 2.6500 -4.6528 -0.9266 38 1 3.0688 -5.8154 -3.0550 39 1 4.8713 -5.0482 -4.5448 40 1 6.2725 -3.1298 -3.9022 41 1 5.8683 -1.9667 -1.7713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003515045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:32 Heat of formation + Delta-G solvation = 23.403234 kcal Electronic energy + Delta-G solvation = -26185.332119 eV Core-core repulsion = 22375.632561 eV Total energy + Delta-G solvation = -3809.699558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.15269 -39.36009 -38.31892 -36.70597 -35.14662 -32.76416 -31.71430 -31.10862 -30.91087 -30.21647 -29.53181 -27.38980 -23.35870 -23.05066 -22.77962 -22.63964 -22.04971 -19.37618 -18.32534 -17.11624 -17.04554 -16.86392 -16.31989 -15.90762 -15.57373 -15.50836 -14.83875 -14.57047 -14.41488 -14.13723 -13.97716 -13.86120 -13.80039 -13.33012 -13.20960 -12.80189 -12.54663 -12.44376 -12.17475 -11.99031 -11.92582 -11.77813 -11.49391 -11.22541 -11.13402 -10.96354 -10.65809 -10.29231 -10.28141 -9.74013 -9.71471 -9.63625 -9.41091 -8.86982 -8.82281 -8.66783 -7.91294 -7.48479 -6.15971 -4.15918 0.72120 0.95813 1.19533 1.35888 1.46686 1.85890 2.25384 2.90368 3.21309 3.23958 3.28530 3.31766 3.46867 3.83653 4.32249 4.42856 4.52796 4.55850 4.88106 4.91395 5.01846 5.03865 5.05725 5.14173 5.17315 5.19620 5.22603 5.50537 5.58023 5.64180 5.71763 5.82055 5.90394 5.91106 6.08390 6.36805 6.38790 6.50449 6.56720 6.58152 6.77461 6.89973 7.12532 7.47431 7.92392 8.33034 8.56454 8.85959 9.42182 10.97150 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.002632 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.647046 B =10634.849241 C =12121.394768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.220 3.780 10 N -0.549 5.549 11 C 0.533 3.467 12 O -0.503 6.503 13 C -0.150 4.150 14 S -0.018 6.018 15 C -0.092 4.092 16 C -0.126 4.126 17 C -0.087 4.087 18 C -0.048 4.048 19 Cl -0.075 7.075 20 C -0.090 4.090 21 C -0.090 4.090 22 C 0.155 3.845 23 C -0.122 4.122 24 C -0.108 4.108 25 C -0.130 4.130 26 C -0.109 4.109 27 C -0.126 4.126 28 H 0.266 0.734 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.906 -17.728 -1.670 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.094 0.906 9 C 0.101 3.899 10 N -0.277 5.277 11 C 0.318 3.682 12 O -0.378 6.378 13 C -0.301 4.301 14 S 0.228 5.772 15 C -0.206 4.206 16 C -0.151 4.151 17 C -0.107 4.107 18 C -0.078 4.078 19 Cl -0.046 7.046 20 C -0.110 4.110 21 C -0.115 4.115 22 C 0.063 3.937 23 C -0.141 4.141 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.127 4.127 27 C -0.146 4.146 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.354 -16.601 -0.094 22.613 hybrid contribution 0.428 0.034 -1.487 1.548 sum 15.782 -16.567 -1.582 22.935 Atomic orbital electron populations 1.69881 1.06161 1.27113 1.49917 1.24813 0.94776 0.98861 0.94300 0.86904 0.80657 0.83945 0.78622 1.19990 1.20722 1.18804 1.21198 0.88664 0.95036 1.51975 0.90595 1.19864 0.96302 0.75878 0.97864 1.45513 1.63832 1.15961 1.02358 1.19291 0.79109 0.85546 0.84208 1.90759 1.50360 1.66417 1.30239 1.23978 1.06017 1.00489 0.99596 1.86322 1.74638 1.08653 1.07628 1.22349 1.01851 1.00011 0.96374 1.21199 1.01651 0.96041 0.96184 1.20943 0.97812 0.93902 0.98066 1.20880 1.03780 0.87992 0.95117 1.98367 1.84137 1.24244 1.97871 1.20965 0.98904 0.95279 0.95896 1.20701 0.99238 0.93532 0.98014 1.17729 0.94359 0.93588 0.87990 1.21406 0.98358 0.96873 0.97508 1.21017 0.97824 0.99881 0.93919 1.21111 0.96512 0.97560 0.99638 1.20983 0.99751 0.95968 0.96044 1.21294 0.97298 1.00814 0.95154 0.92414 0.93590 0.95123 0.86479 0.86874 0.84913 0.84695 0.84526 0.84401 0.85668 0.85853 0.86169 0.85922 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 21.06 27.47 -169.99 -4.67 16.40 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.78 16 7 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 8 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 9 C 0.22 5.20 4.14 -5.20 -0.02 5.18 16 10 N -0.55 -10.88 2.51 -114.74 -0.29 -11.17 16 11 C 0.53 10.33 7.55 -10.99 -0.08 10.25 16 12 O -0.50 -11.79 15.50 5.55 0.09 -11.70 16 13 C -0.15 -2.11 3.48 36.00 0.13 -1.98 16 14 S -0.02 -0.26 21.07 -107.50 -2.26 -2.52 16 15 C -0.09 -1.06 6.11 -39.05 -0.24 -1.29 16 16 C -0.13 -1.29 9.36 -39.37 -0.37 -1.66 16 17 C -0.09 -0.81 9.82 -39.58 -0.39 -1.20 16 18 C -0.05 -0.45 6.32 -39.46 -0.25 -0.70 16 19 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 20 C -0.09 -0.81 9.82 -39.58 -0.39 -1.20 16 21 C -0.09 -0.91 9.79 -39.37 -0.39 -1.29 16 22 C 0.16 2.54 4.42 -83.69 -0.37 2.17 16 23 C -0.12 -1.80 8.46 -39.39 -0.33 -2.13 16 24 C -0.11 -1.28 10.04 -39.61 -0.40 -1.68 16 25 C -0.13 -1.40 10.04 -39.55 -0.40 -1.80 16 26 C -0.11 -1.25 10.04 -39.61 -0.40 -1.64 16 27 C -0.13 -1.77 9.64 -39.39 -0.38 -2.14 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.05 1.15 6.54 -51.93 -0.34 0.81 16 30 H 0.03 0.69 7.26 -51.93 -0.38 0.31 16 31 H 0.12 1.48 6.60 -51.93 -0.34 1.14 16 32 H 0.11 1.35 7.63 -51.92 -0.40 0.95 16 33 H 0.13 1.23 5.88 -52.48 -0.31 0.92 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.13 1.91 7.91 -52.49 -0.42 1.50 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -32.80 379.25 -11.59 -44.39 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.73 Total: 1.72 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -4.71 Total: -14.30 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.49 Total: -37.54 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -2.26 Total: -2.52 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.80 -11.59 -44.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003515045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.793 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds