Wall clock time and date at job start Tue Mar 31 2020 07:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47080 * 270.00225 * 3 2 1 5 5 H 1.48505 * 109.46978 * 30.00126 * 3 2 1 6 6 H 1.48494 * 109.47250 * 150.00052 * 3 2 1 7 7 C 1.37878 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99698 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00021 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47082 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00115 * 269.99989 * 10 9 7 12 12 O 1.21289 * 119.99585 * 4.45849 * 11 10 9 13 13 C 1.50697 * 120.00124 * 184.45604 * 11 10 9 14 14 S 1.81404 * 109.47176 * 174.35687 * 13 11 10 15 15 C 1.76200 * 102.99796 * 179.97438 * 14 13 11 16 16 C 1.38953 * 120.07130 * 359.72597 * 15 14 13 17 17 C 1.38085 * 119.93388 * 179.78638 * 16 15 14 18 18 C 1.38398 * 120.06439 * 0.48974 * 17 16 15 19 19 Cl 1.73603 * 119.93193 * 179.71806 * 18 17 16 20 20 C 1.38397 * 120.13607 * 359.74592 * 18 17 16 21 21 C 1.38080 * 120.06643 * 0.02562 * 20 18 17 22 22 C 1.39922 * 120.00092 * 89.99842 * 10 9 7 23 23 C 1.38872 * 120.07153 * 246.79332 * 22 10 9 24 24 C 1.38117 * 119.92996 * 180.23004 * 23 22 10 25 25 C 1.38280 * 120.06918 * 359.47437 * 24 23 22 26 26 C 1.38288 * 120.14015 * 0.54667 * 25 24 23 27 27 C 1.38109 * 120.06953 * 359.70609 * 26 25 24 28 28 H 0.97006 * 119.99798 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47445 * 59.99781 * 9 7 2 30 30 H 1.08997 * 109.47442 * 299.99810 * 9 7 2 31 31 H 1.08997 * 109.47556 * 294.36009 * 13 11 10 32 32 H 1.08999 * 109.47263 * 54.36069 * 13 11 10 33 33 H 1.08004 * 120.03319 * 0.02562 * 16 15 14 34 34 H 1.07996 * 119.96630 * 180.20872 * 17 16 15 35 35 H 1.07996 * 119.96128 * 180.02562 * 20 18 17 36 36 H 1.08002 * 120.03631 * 179.97438 * 21 20 18 37 37 H 1.07997 * 120.03650 * 359.95232 * 23 22 10 38 38 H 1.07999 * 119.96379 * 179.72487 * 24 23 22 39 39 H 1.07996 * 119.93179 * 180.25816 * 25 24 23 40 40 H 1.07999 * 119.96272 * 179.73004 * 26 25 24 41 41 H 1.08003 * 120.03281 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 4.2249 -3.2103 1.1663 12 8 3.9471 -2.6681 2.2150 13 6 4.8218 -4.5941 1.1683 14 16 5.1546 -5.1065 2.8763 15 6 5.8364 -6.7194 2.6805 16 6 5.9815 -7.2645 1.4106 17 6 6.5203 -8.5270 1.2601 18 6 6.9062 -9.2533 2.3731 19 17 7.5763 -10.8432 2.1803 20 6 6.7584 -8.7151 3.6395 21 6 6.2246 -7.4513 3.7962 22 6 4.2326 -3.2351 -1.2127 23 6 3.4437 -4.3181 -1.5779 24 6 3.6791 -4.9703 -2.7725 25 6 4.6919 -4.5392 -3.6094 26 6 5.4794 -3.4614 -3.2484 27 6 5.2526 -2.8082 -2.0529 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 4.1219 -5.2924 0.7093 32 1 5.7534 -4.5888 0.6025 33 1 5.6768 -6.6997 0.5419 34 1 6.6364 -8.9498 0.2731 35 1 7.0608 -9.2843 4.5061 36 1 6.1091 -7.0319 4.7847 37 1 2.6500 -4.6528 -0.9266 38 1 3.0688 -5.8154 -3.0550 39 1 4.8713 -5.0482 -4.5448 40 1 6.2725 -3.1298 -3.9022 41 1 5.8683 -1.9667 -1.7713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003515045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:31 Heat of formation + Delta-G solvation = 6.616637 kcal Electronic energy + Delta-G solvation = -26186.060040 eV Core-core repulsion = 22375.632561 eV Total energy + Delta-G solvation = -3810.427479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52562 -40.12059 -39.56497 -37.41936 -36.66619 -34.82111 -32.70658 -32.00801 -31.81356 -31.55448 -30.69586 -29.08306 -24.76580 -24.00633 -23.83034 -23.67542 -23.29424 -20.70443 -19.31359 -19.17207 -18.27704 -17.98065 -17.42028 -17.09919 -16.90996 -16.51314 -16.07203 -15.71616 -15.61031 -15.51438 -14.97253 -14.76534 -14.69135 -14.53164 -14.35071 -14.31918 -14.03019 -13.76424 -13.56294 -13.20275 -12.96557 -12.76232 -12.61222 -12.55206 -12.43223 -12.19480 -11.98995 -11.84054 -11.79647 -11.29343 -11.24517 -10.86201 -10.54450 -10.21279 -10.14870 -9.85780 -9.29416 -8.51165 -8.37605 -6.43532 -0.06477 0.12852 0.21738 0.30138 0.47654 1.10220 1.27609 1.28937 1.33431 1.42473 1.43592 2.03176 2.27338 2.47855 2.81873 2.96359 3.30043 3.70578 3.78538 3.82509 3.99764 4.07323 4.10308 4.20233 4.31045 4.31622 4.48907 4.52411 4.57626 4.65323 4.77248 4.82590 4.87758 4.96044 5.12807 5.14422 5.17355 5.31396 5.35330 5.51401 5.61265 5.62521 5.66854 6.01291 6.15119 6.45754 6.56628 7.02668 7.20867 8.79280 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.002632 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.647046 B =10634.849241 C =12121.394768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.535 4.535 8 H 0.028 0.972 9 C 0.230 3.770 10 N -0.552 5.552 11 C 0.524 3.476 12 O -0.557 6.557 13 C -0.124 4.124 14 S -0.069 6.069 15 C -0.100 4.100 16 C -0.129 4.129 17 C -0.087 4.087 18 C -0.051 4.051 19 Cl -0.066 7.066 20 C -0.088 4.088 21 C -0.095 4.095 22 C 0.118 3.882 23 C -0.138 4.138 24 C -0.104 4.104 25 C -0.116 4.116 26 C -0.101 4.101 27 C -0.133 4.133 28 H 0.269 0.731 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.762 -19.174 -4.218 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.767 3.233 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.574 4.574 8 H 0.046 0.954 9 C 0.109 3.891 10 N -0.279 5.279 11 C 0.312 3.688 12 O -0.436 6.436 13 C -0.275 4.275 14 S 0.176 5.824 15 C -0.213 4.213 16 C -0.153 4.153 17 C -0.107 4.107 18 C -0.080 4.080 19 Cl -0.037 7.037 20 C -0.108 4.108 21 C -0.119 4.119 22 C 0.028 3.972 23 C -0.158 4.158 24 C -0.122 4.122 25 C -0.133 4.133 26 C -0.119 4.119 27 C -0.153 4.153 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.163 0.837 37 H 0.123 0.877 38 H 0.166 0.834 39 H 0.177 0.823 40 H 0.175 0.825 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.242 -18.107 -2.688 25.843 hybrid contribution -0.465 0.255 -0.765 0.930 sum 17.777 -17.852 -3.453 25.429 Atomic orbital electron populations 1.70041 1.08179 1.28404 1.51559 1.25821 0.95693 1.03254 0.93727 0.85759 0.79379 0.78303 0.79882 1.17580 1.20527 1.17596 1.21404 0.91115 0.93324 1.51546 0.95382 1.19475 0.93252 0.78767 0.97614 1.45406 1.63375 1.14881 1.04198 1.20133 0.78253 0.87123 0.83318 1.90717 1.52679 1.68158 1.32011 1.23728 1.06883 0.97022 0.99868 1.86467 1.76013 1.11668 1.08263 1.22233 1.03143 0.98353 0.97569 1.21339 1.01516 0.96546 0.95894 1.21165 0.97106 0.93359 0.99095 1.21066 1.03240 0.88369 0.95355 1.98375 1.83933 1.23540 1.97849 1.21190 0.98141 0.94797 0.96722 1.20882 0.99049 0.93904 0.98111 1.17990 0.96717 0.95000 0.87539 1.21376 0.98201 0.97397 0.98836 1.21317 0.98301 1.00066 0.92535 1.21581 0.94769 0.96684 1.00303 1.21383 1.00176 0.95307 0.95016 1.21429 0.96797 1.01287 0.95785 0.92166 0.95247 0.93264 0.85236 0.84428 0.84101 0.82652 0.82395 0.83667 0.87747 0.83363 0.82338 0.82537 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.69 13.96 21.45 0.30 -59.39 16 2 C 0.01 0.80 5.47 84.66 0.46 1.26 16 3 Si 0.94 44.12 27.47 68.60 1.88 46.01 16 4 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 7 C -0.54 -31.69 9.94 25.60 0.25 -31.43 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 9 C 0.23 11.23 4.14 85.63 0.35 11.59 16 10 N -0.55 -22.77 2.51 -635.31 -1.59 -24.36 16 11 C 0.52 21.43 7.55 87.66 0.66 22.09 16 12 O -0.56 -27.94 15.50 -3.06 -0.05 -27.98 16 13 C -0.12 -3.61 3.48 71.23 0.25 -3.36 16 14 S -0.07 -2.02 21.07 -56.49 -1.19 -3.21 16 15 C -0.10 -2.24 6.11 22.62 0.14 -2.10 16 16 C -0.13 -2.44 9.36 22.40 0.21 -2.23 16 17 C -0.09 -1.41 9.82 22.27 0.22 -1.19 16 18 C -0.05 -0.84 6.32 22.35 0.14 -0.70 16 19 Cl -0.07 -0.98 28.95 -2.72 -0.08 -1.06 16 20 C -0.09 -1.42 9.82 22.27 0.22 -1.20 16 21 C -0.10 -1.84 9.79 22.41 0.22 -1.62 16 22 C 0.12 3.86 4.42 38.15 0.17 4.03 16 23 C -0.14 -4.08 8.46 22.39 0.19 -3.89 16 24 C -0.10 -2.19 10.04 22.25 0.22 -1.96 16 25 C -0.12 -1.97 10.04 22.29 0.22 -1.75 16 26 C -0.10 -1.89 10.04 22.25 0.22 -1.67 16 27 C -0.13 -3.49 9.64 22.39 0.22 -3.28 16 28 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 29 H 0.03 1.53 6.54 -2.39 -0.02 1.52 16 30 H 0.05 2.21 7.26 -2.39 -0.02 2.19 16 31 H 0.13 3.37 6.60 -2.39 -0.02 3.35 16 32 H 0.14 3.23 7.63 -2.39 -0.02 3.21 16 33 H 0.14 2.36 5.88 -2.91 -0.02 2.34 16 34 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.10 3.41 7.91 -2.91 -0.02 3.39 16 38 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 41 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -77.03 379.25 4.64 -72.39 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.00 Total: 15.03 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.37 Total: -17.42 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.30 Total: -83.75 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.05 Total: -27.98 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.01 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -1.19 Total: -3.21 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -77.03 4.64 -72.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003515045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.002 kcal (2) G-P(sol) polarization free energy of solvation -77.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds