Wall clock time and date at job start Tue Mar 31 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35944 * 117.00348 * 2 1 4 4 C 1.37943 * 120.04963 * 359.97438 * 3 2 1 5 5 C 1.40376 * 119.68773 * 180.02562 * 4 3 2 6 6 C 1.46210 * 120.10618 * 179.97438 * 5 4 3 7 7 C 1.38269 * 120.00005 * 136.67920 * 6 5 4 8 8 C 1.47606 * 121.48003 * 347.30663 * 7 6 5 9 9 O 1.21646 * 120.91880 * 359.97438 * 8 7 6 10 10 N 1.34904 * 118.16538 * 179.69058 * 8 7 6 11 11 C 1.46496 * 119.22917 * 180.31069 * 10 8 7 12 12 C 1.34020 * 121.53911 * 0.63063 * 10 8 7 13 13 O 1.21542 * 118.22894 * 179.66102 * 12 10 8 14 14 N 1.34028 * 123.54714 * 359.63576 * 12 10 8 15 15 C 1.46506 * 119.23247 * 180.02562 * 14 12 10 16 16 C 1.34902 * 121.53828 * 0.02937 * 14 12 10 17 17 O 1.21640 * 120.91425 * 179.97438 * 16 14 12 18 18 C 1.40389 * 119.78892 * 359.97438 * 5 4 3 19 19 C 1.36479 * 120.09383 * 359.97438 * 18 5 4 20 20 C 1.39194 * 120.32036 * 359.72363 * 19 18 5 21 21 O 1.35504 * 119.89555 * 180.29660 * 20 19 18 22 22 C 1.34698 * 117.00011 * 6.13950 * 21 20 19 23 23 H 1.07996 * 120.00077 * 5.66238 * 22 21 20 24 24 C 1.38813 * 119.99670 * 185.65218 * 22 21 20 25 25 N 1.31445 * 120.00273 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99655 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46543 * 60.00829 * 26 24 22 28 28 H 1.48497 * 109.46869 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47245 * 300.00383 * 26 24 22 30 30 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46906 * 60.00409 * 1 2 3 32 32 H 1.09004 * 109.47035 * 299.99925 * 1 2 3 33 33 H 1.07995 * 120.15721 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.99985 * 316.68056 * 6 5 4 35 35 H 1.09006 * 109.47025 * 180.30698 * 11 10 8 36 36 H 1.09000 * 109.47246 * 300.30935 * 11 10 8 37 37 H 1.08997 * 109.47347 * 60.30935 * 11 10 8 38 38 H 1.08992 * 109.47069 * 269.97969 * 15 14 12 39 39 H 1.08999 * 109.46748 * 29.98031 * 15 14 12 40 40 H 1.08995 * 109.46725 * 149.97798 * 15 14 12 41 41 H 1.07993 * 119.94952 * 180.02562 * 18 5 4 42 42 H 1.08005 * 119.84178 * 180.02562 * 19 18 5 43 43 H 0.97006 * 119.99988 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2960 2.3688 -0.0005 5 6 1.9413 3.6155 -0.0011 6 6 1.1551 4.8482 -0.0022 7 6 1.5175 5.9001 0.8188 8 6 2.5078 5.7283 1.8998 9 8 3.0348 4.6503 2.0993 10 7 2.8167 6.8014 2.6568 11 6 3.8017 6.6589 3.7318 12 6 2.2387 7.9932 2.4525 13 8 2.5573 8.9179 3.1741 14 7 1.3288 8.2208 1.4951 15 6 0.7576 9.5626 1.3553 16 6 0.9267 7.2430 0.6571 17 8 0.0997 7.4621 -0.2076 18 6 3.3439 3.6748 -0.0005 19 6 4.0776 2.5240 0.0011 20 6 3.4421 1.2856 0.0079 21 8 4.1790 0.1484 0.0155 22 6 5.5129 0.2849 0.1444 23 1 5.9408 1.2595 0.3273 24 6 6.3374 -0.8271 0.0422 25 7 5.8165 -2.0132 -0.1807 26 14 8.1873 -0.6377 0.2202 27 1 8.5010 -0.0804 1.5604 28 1 8.8373 -1.9645 0.0708 29 1 8.6939 0.2823 -0.8295 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 0.2174 2.3162 -0.0014 34 1 0.2913 4.9372 -0.6443 35 1 3.9249 7.6149 4.2407 36 1 3.4562 5.9098 4.4442 37 1 4.7569 6.3460 3.3102 38 1 -0.1357 9.6435 1.9746 39 1 1.4897 10.3042 1.6749 40 1 0.4938 9.7383 0.3125 41 1 3.8430 4.6325 -0.0005 42 1 5.1564 2.5744 0.0019 43 1 6.3928 -2.7903 -0.2524 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003570198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:55 Heat of formation + Delta-G solvation = -78.107281 kcal Electronic energy + Delta-G solvation = -32285.021493 eV Core-core repulsion = 27685.176735 eV Total energy + Delta-G solvation = -4599.844758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.125 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.34834 -39.92120 -39.43663 -39.04709 -37.82355 -36.54741 -35.43130 -35.20011 -33.29595 -32.53009 -29.97438 -29.58222 -28.16687 -26.90202 -26.72314 -25.84675 -24.83091 -22.95613 -22.76714 -21.77182 -20.59630 -19.54654 -18.36494 -17.82220 -17.44373 -17.36811 -17.03102 -16.17774 -15.76059 -15.55896 -15.33020 -15.29789 -15.27098 -14.86662 -14.75790 -14.31352 -14.18730 -13.99699 -13.73969 -13.63020 -13.26982 -13.12224 -12.94028 -12.63877 -12.53156 -12.46565 -11.96139 -11.85664 -11.67570 -11.31683 -11.20513 -11.10683 -10.98244 -10.82577 -10.62050 -10.43180 -10.06198 -9.91472 -9.76321 -9.71965 -9.43495 -9.01032 -8.07175 -7.00042 -6.81215 -4.24594 0.16407 1.78647 1.87032 2.10825 2.23955 2.38477 2.86430 2.97220 2.99769 3.01758 3.53778 3.70883 3.87746 3.91958 4.30793 4.67783 4.80084 4.82809 4.98651 5.03690 5.14091 5.16374 5.24772 5.31221 5.34893 5.40394 5.46783 5.48369 5.49036 5.50407 5.64873 5.69138 5.77347 5.87700 6.09561 6.19165 6.35618 6.39690 6.70403 6.84058 6.95445 7.14889 7.18757 7.25475 7.39808 7.51913 7.61302 7.89250 8.01677 8.61203 9.29964 10.33255 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.002933 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.650571 B = 9544.709987 C =11203.939978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.042 3.958 4 C -0.117 4.117 5 C -0.208 4.208 6 C 0.165 3.835 7 C -0.345 4.345 8 C 0.557 3.443 9 O -0.460 6.460 10 N -0.566 5.566 11 C 0.080 3.920 12 C 0.712 3.288 13 O -0.544 6.544 14 N -0.567 5.567 15 C 0.082 3.918 16 C 0.572 3.428 17 O -0.504 6.504 18 C 0.017 3.983 19 C -0.231 4.231 20 C 0.162 3.838 21 O -0.132 6.132 22 C -0.382 4.382 23 H 0.102 0.898 24 C 0.042 3.958 25 N -0.832 5.832 26 Si 0.948 3.052 27 H -0.265 1.265 28 H -0.274 1.274 29 H -0.265 1.265 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 14.221 2.367 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C -0.003 4.003 4 C -0.136 4.136 5 C -0.210 4.210 6 C 0.145 3.855 7 C -0.352 4.352 8 C 0.350 3.650 9 O -0.331 6.331 10 N -0.311 5.311 11 C -0.061 4.061 12 C 0.415 3.585 13 O -0.418 6.418 14 N -0.311 5.311 15 C -0.059 4.059 16 C 0.367 3.633 17 O -0.379 6.379 18 C -0.002 4.002 19 C -0.250 4.250 20 C 0.103 3.897 21 O -0.031 6.031 22 C -0.457 4.457 23 H 0.119 0.881 24 C -0.167 4.167 25 N -0.462 5.462 26 Si 0.771 3.229 27 H -0.189 1.189 28 H -0.199 1.199 29 H -0.190 1.190 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.154 0.846 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.222 13.453 2.356 15.449 hybrid contribution 0.585 0.386 0.204 0.730 sum -6.636 13.838 2.561 15.559 Atomic orbital electron populations 1.22910 0.80166 1.03095 1.00357 1.86221 1.19566 1.26110 1.89942 1.17870 0.89193 0.84557 1.08700 1.20734 0.98340 0.90465 1.04088 1.17949 0.92991 0.90789 1.19238 1.23069 0.90443 0.88358 0.83625 1.21495 1.11683 0.95409 1.06568 1.18487 0.81596 0.83326 0.81586 1.91001 1.49895 1.23731 1.68477 1.46026 1.41160 1.09184 1.34769 1.21929 0.90876 1.04522 0.88817 1.15431 0.78805 0.83435 0.80846 1.90938 1.63611 1.40963 1.46326 1.45875 1.39811 1.14123 1.31301 1.21883 0.99526 0.80402 1.04123 1.18484 0.80572 0.84275 0.79962 1.90809 1.31531 1.82811 1.32735 1.20427 0.91700 0.97099 0.90928 1.20469 1.00691 0.90657 1.13190 1.18990 0.88240 0.87331 0.95176 1.83933 1.20000 1.26532 1.72606 1.21669 0.78387 0.96738 1.48865 0.88070 1.25532 1.01305 0.94095 0.95745 1.70002 1.37218 0.98951 1.40054 0.85656 0.79049 0.78476 0.79723 1.18930 1.19877 1.18969 0.88978 0.93416 0.93518 0.85815 0.83975 0.88215 0.90345 0.90232 0.91032 0.88998 0.89022 0.87606 0.84593 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.22 10.28 -34.09 -0.35 -6.57 16 3 C 0.04 0.86 6.70 -39.11 -0.26 0.60 16 4 C -0.12 -1.99 8.79 -38.89 -0.34 -2.33 16 5 C -0.21 -3.46 4.76 -105.08 -0.50 -3.96 16 6 C 0.17 2.29 9.44 -36.37 -0.34 1.95 16 7 C -0.34 -4.89 5.86 -102.24 -0.60 -5.49 16 8 C 0.56 8.39 6.94 -12.38 -0.09 8.30 16 9 O -0.46 -8.10 12.40 5.24 0.06 -8.03 16 10 N -0.57 -7.59 2.94 -129.69 -0.38 -7.97 16 11 C 0.08 0.88 9.97 59.84 0.60 1.48 16 12 C 0.71 9.52 8.07 -88.26 -0.71 8.81 16 13 O -0.54 -7.82 14.69 5.33 0.08 -7.74 16 14 N -0.57 -7.08 2.94 -129.69 -0.38 -7.46 16 15 C 0.08 0.77 10.05 59.85 0.60 1.37 16 16 C 0.57 7.82 7.64 -12.38 -0.09 7.72 16 17 O -0.50 -7.48 16.17 5.24 0.08 -7.40 16 18 C 0.02 0.31 6.60 -39.41 -0.26 0.05 16 19 C -0.23 -4.77 9.05 -39.86 -0.36 -5.13 16 20 C 0.16 3.75 6.68 -38.65 -0.26 3.50 16 21 O -0.13 -3.59 9.52 -13.35 -0.13 -3.71 16 22 C -0.38 -9.90 9.43 30.94 0.29 -9.61 16 23 H 0.10 2.39 5.28 -52.49 -0.28 2.11 16 24 C 0.04 1.07 5.50 -17.50 -0.10 0.97 16 25 N -0.83 -22.67 13.67 55.49 0.76 -21.91 16 26 Si 0.95 18.80 29.55 -169.99 -5.02 13.77 16 27 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 28 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 29 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 32 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 33 H 0.12 1.69 6.29 -52.49 -0.33 1.36 16 34 H 0.14 1.63 7.82 -52.49 -0.41 1.22 16 35 H 0.10 1.01 6.72 -51.93 -0.35 0.67 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.80 7.27 -51.93 -0.38 0.42 16 40 H 0.09 0.79 7.40 -51.93 -0.38 0.41 16 41 H 0.11 1.76 7.02 -52.49 -0.37 1.39 16 42 H 0.14 2.76 5.69 -52.48 -0.30 2.46 16 43 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -31.93 368.48 -5.58 -37.51 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.42 Total: 4.32 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -1.43 Total: 9.65 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.01 Total: -37.34 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.25 Total: -33.45 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.93 -5.58 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003570198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.601 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds