Wall clock time and date at job start Tue Mar 31 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35077 * 125.83053 * 2 1 4 4 N 1.40984 * 125.99896 * 359.96113 * 3 2 1 5 5 C 1.34774 * 120.00255 * 236.60160 * 4 3 2 6 6 S 1.71200 * 119.99826 * 355.93822 * 5 4 3 7 7 N 1.34774 * 120.00269 * 175.93725 * 5 4 3 8 8 C 1.46499 * 119.99652 * 359.73033 * 7 5 4 9 9 C 1.46496 * 120.00061 * 179.97438 * 7 5 4 10 10 C 1.50698 * 109.47185 * 90.00295 * 9 7 5 11 11 H 1.07999 * 119.99612 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00075 * 179.97438 * 10 9 7 13 13 N 1.31511 * 120.00089 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99875 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47078 * 89.99972 * 14 12 10 16 16 H 1.48498 * 109.46687 * 210.00202 * 14 12 10 17 17 H 1.48506 * 109.46900 * 329.99816 * 14 12 10 18 18 C 1.41880 * 108.01281 * 179.69543 * 3 2 1 19 19 O 1.21779 * 126.16516 * 180.23827 * 18 3 2 20 20 N 1.34853 * 107.68414 * 0.26474 * 18 3 2 21 21 C 1.39826 * 126.11280 * 179.97438 * 20 18 3 22 22 C 1.38893 * 120.07553 * 130.40943 * 21 20 18 23 23 C 1.38104 * 119.92966 * 179.74701 * 22 21 20 24 24 C 1.38282 * 120.07359 * 0.51320 * 23 22 21 25 25 C 1.38293 * 120.14607 * 359.76219 * 24 23 22 26 26 C 1.38106 * 120.06828 * 359.97438 * 25 24 23 27 27 N 1.37196 * 125.83410 * 180.14054 * 2 1 3 28 28 C 1.46503 * 125.90849 * 0.02562 * 27 2 1 29 29 H 1.08992 * 109.47179 * 0.02772 * 1 2 3 30 30 H 1.09010 * 109.47090 * 120.02785 * 1 2 3 31 31 H 1.09000 * 109.47318 * 240.02021 * 1 2 3 32 32 H 0.97001 * 119.99857 * 56.59831 * 4 3 2 33 33 H 1.08999 * 109.47885 * 89.99632 * 8 7 5 34 34 H 1.09007 * 109.46901 * 209.99525 * 8 7 5 35 35 H 1.09005 * 109.47238 * 329.98758 * 8 7 5 36 36 H 1.09003 * 109.47136 * 210.00089 * 9 7 5 37 37 H 1.09001 * 109.47245 * 329.99945 * 9 7 5 38 38 H 0.96996 * 120.00021 * 180.02562 * 13 12 10 39 39 H 1.08001 * 120.03565 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.96283 * 180.25437 * 23 22 21 41 41 H 1.08003 * 119.93332 * 179.74410 * 24 23 22 42 42 H 1.08001 * 119.96486 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.03395 * 180.02562 * 26 25 24 44 44 H 1.08996 * 109.47148 * 265.44708 * 28 27 2 45 45 H 1.08997 * 109.47086 * 25.45472 * 28 27 2 46 46 H 1.09004 * 109.47096 * 145.45038 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0951 0.0000 4 7 1.8581 2.4347 -0.0008 5 6 2.2589 3.2750 -0.9753 6 16 3.3832 2.7458 -2.1529 7 7 1.7746 4.5318 -1.0228 8 6 0.8080 4.9827 -0.0186 9 6 2.2107 5.4453 -2.0818 10 6 1.2904 5.3152 -3.2680 11 1 0.4630 4.6217 -3.2359 12 6 1.5039 6.0823 -4.3936 13 7 2.5110 6.9271 -4.4323 14 14 0.3625 5.9215 -5.8637 15 1 -0.7612 6.8823 -5.7252 16 1 1.1154 6.2163 -7.1093 17 1 -0.1737 4.5380 -5.9250 18 6 3.6485 0.6610 0.0072 19 8 4.6334 1.3771 0.0133 20 7 3.6453 -0.6875 0.0054 21 6 4.7730 -1.5142 0.0103 22 6 4.8689 -2.5553 0.9247 23 6 5.9816 -3.3733 0.9234 24 6 7.0046 -3.1501 0.0201 25 6 6.9150 -2.1109 -0.8879 26 6 5.8024 -1.2927 -0.8955 27 7 2.3102 -1.1123 -0.0027 28 6 1.8512 -2.5035 -0.0067 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3634 -0.5143 -0.8898 31 1 -0.3634 -0.5135 0.8902 32 1 1.2671 2.7515 0.7001 33 1 1.3395 5.4143 0.8295 34 1 0.1523 5.7348 -0.4574 35 1 0.2126 4.1344 0.3193 36 1 2.1836 6.4701 -1.7115 37 1 3.2281 5.1943 -2.3820 38 1 2.6610 7.4669 -5.2241 39 1 4.0724 -2.7273 1.6335 40 1 6.0549 -4.1855 1.6314 41 1 7.8757 -3.7887 0.0238 42 1 7.7155 -1.9396 -1.5924 43 1 5.7328 -0.4815 -1.6051 44 1 1.8145 -2.8769 1.0167 45 1 0.8564 -2.5567 -0.4489 46 1 2.5415 -3.1122 -0.5909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003627098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:43 Heat of formation + Delta-G solvation = 127.547528 kcal Electronic energy + Delta-G solvation = -30016.489907 eV Core-core repulsion = 26036.441728 eV Total energy + Delta-G solvation = -3980.048179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.136 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.86639 -39.22117 -38.39789 -37.04224 -35.38706 -33.52201 -32.53775 -31.68926 -31.05169 -30.69813 -28.14457 -27.64924 -26.76241 -25.53274 -23.52421 -22.87565 -22.61625 -21.09794 -20.70315 -20.00014 -18.43294 -17.42488 -16.99116 -16.52652 -16.28793 -16.25463 -15.75409 -15.14399 -14.83704 -14.64919 -14.40732 -14.22968 -14.10960 -13.82085 -13.66549 -13.64989 -13.45389 -13.41252 -13.00820 -12.90405 -12.61658 -12.21436 -12.07216 -11.82212 -11.73399 -11.61465 -11.24548 -11.15216 -10.88784 -10.60893 -10.17788 -10.03165 -9.93747 -9.69660 -9.45347 -9.17305 -8.73141 -8.35972 -8.11351 -7.35575 -6.59946 -6.01110 -5.94414 -3.98767 0.84252 1.16645 1.38870 1.63837 2.43474 2.78814 3.26202 3.35413 3.43501 3.46764 3.47937 3.63690 3.91843 4.16393 4.30886 4.47565 4.52396 4.65703 4.72028 4.81292 4.85811 4.93637 5.05075 5.13890 5.17838 5.24582 5.27468 5.39722 5.41313 5.49992 5.53820 5.62817 5.78358 5.81299 5.92594 6.08161 6.21969 6.24526 6.33085 6.57206 6.66523 6.94668 7.18001 7.27010 7.41303 7.65090 7.73072 8.00635 8.15174 8.27161 8.58848 8.99591 9.62886 11.13038 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.002893 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.911009 B = 9677.105062 C =10377.310717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.176 3.824 3 C -0.051 4.051 4 N -0.618 5.618 5 C 0.557 3.443 6 S -0.617 6.617 7 N -0.549 5.549 8 C 0.065 3.935 9 C 0.239 3.761 10 C -0.514 4.514 11 H 0.055 0.945 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.283 1.283 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.555 3.445 19 O -0.485 6.485 20 N -0.373 5.373 21 C 0.159 3.841 22 C -0.132 4.132 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.101 4.101 26 C -0.099 4.099 27 N -0.397 5.397 28 C 0.107 3.893 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.392 0.608 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.263 0.737 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -22.992 15.838 28.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.059 3.941 3 C -0.158 4.158 4 N -0.250 5.250 5 C 0.202 3.798 6 S -0.486 6.486 7 N -0.255 5.255 8 C -0.082 4.082 9 C 0.120 3.880 10 C -0.554 4.554 11 H 0.073 0.927 12 C -0.137 4.137 13 N -0.530 5.530 14 Si 0.726 3.274 15 H -0.209 1.209 16 H -0.211 1.211 17 H -0.199 1.199 18 C 0.348 3.652 19 O -0.356 6.356 20 N -0.189 5.189 21 C 0.068 3.932 22 C -0.153 4.153 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.119 4.119 26 C -0.119 4.119 27 N -0.193 5.193 28 C -0.034 4.034 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.231 0.769 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.380 -22.909 14.917 27.441 hybrid contribution -1.582 0.381 0.065 1.628 sum -3.961 -22.528 14.982 27.343 Atomic orbital electron populations 1.20610 0.86130 1.05138 1.03546 1.20686 0.93246 0.84509 0.95619 1.16671 0.92466 0.83212 1.23488 1.41359 1.50344 1.06978 1.26369 1.22220 0.87480 0.82944 0.87191 1.93010 1.35998 1.81182 1.38429 1.47638 1.39086 1.10003 1.28770 1.21920 0.93208 1.00630 0.92402 1.19920 0.99514 0.85777 0.82771 1.21135 1.12405 1.22513 0.99316 0.92663 1.24834 0.95495 0.95194 0.98150 1.69926 1.28871 1.24738 1.29449 0.86490 0.80340 0.78246 0.82285 1.20926 1.21078 1.19906 1.16728 0.90641 0.78831 0.78980 1.90948 1.39433 1.54688 1.50540 1.45511 0.94293 1.05967 1.73173 1.17430 0.86269 0.93182 0.96324 1.21080 0.99574 0.96851 0.97781 1.20950 0.93349 0.99296 0.99145 1.21226 0.98894 0.98143 0.96003 1.21107 0.97349 0.94540 0.98924 1.21352 0.93671 0.99950 0.96974 1.45998 0.93936 1.04925 1.74450 1.21925 1.01240 0.77447 1.02821 0.89124 0.89418 0.89850 0.76868 0.92429 0.89121 0.92563 0.94623 0.90397 0.92739 0.85921 0.85520 0.85644 0.85083 0.84408 0.91486 0.88585 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.74 36.01 0.35 -0.35 16 2 C 0.18 2.12 6.97 -81.31 -0.57 1.55 16 3 C -0.05 -0.85 5.84 -83.37 -0.49 -1.33 16 4 N -0.62 -10.59 4.94 -11.26 -0.06 -10.65 16 5 C 0.56 12.41 7.64 -86.92 -0.66 11.74 16 6 S -0.62 -16.93 24.91 -107.50 -2.68 -19.60 16 7 N -0.55 -11.84 2.86 -185.00 -0.53 -12.37 16 8 C 0.07 0.98 10.16 59.85 0.61 1.59 16 9 C 0.24 6.34 4.92 -5.20 -0.03 6.31 16 10 C -0.51 -14.62 9.39 -34.44 -0.32 -14.94 16 11 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 12 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 13 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 14 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.55 10.73 6.67 -14.83 -0.10 10.63 16 19 O -0.49 -11.49 15.73 5.12 0.08 -11.41 16 20 N -0.37 -5.67 3.64 -12.38 -0.05 -5.71 16 21 C 0.16 2.17 5.71 -83.72 -0.48 1.70 16 22 C -0.13 -1.34 8.99 -39.39 -0.35 -1.69 16 23 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 24 C -0.12 -1.09 10.04 -39.55 -0.40 -1.49 16 25 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 26 C -0.10 -1.41 9.31 -39.39 -0.37 -1.78 16 27 N -0.40 -4.50 4.06 -63.39 -0.26 -4.75 16 28 C 0.11 0.64 9.86 59.85 0.59 1.23 16 29 H 0.09 0.70 7.77 -51.93 -0.40 0.30 16 30 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.39 5.12 6.62 -40.82 -0.27 4.85 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.37 8.07 -51.93 -0.42 0.96 16 35 H 0.06 0.65 6.44 -51.93 -0.33 0.31 16 36 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.08 2.38 6.58 -51.93 -0.34 2.04 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.12 1.01 7.55 -52.49 -0.40 0.61 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.14 2.38 7.99 -52.49 -0.42 1.96 16 44 H 0.07 0.26 7.98 -51.93 -0.41 -0.15 16 45 H 0.10 0.34 7.69 -51.93 -0.40 -0.05 16 46 H 0.08 0.51 7.81 -51.93 -0.41 0.10 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -41.95 398.36 -11.18 -53.12 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.30 Total: 2.16 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -3.11 Total: 12.15 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.15 Total: -59.74 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: -16.93 SS G_CDS: -2.68 Total: -19.60 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -41.95 -11.18 -53.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003627098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.672 kcal (2) G-P(sol) polarization free energy of solvation -41.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds