Wall clock time and date at job start Tue Mar 31 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35077 * 125.83053 * 2 1 4 4 N 1.40984 * 125.99896 * 359.96113 * 3 2 1 5 5 C 1.34774 * 120.00255 * 236.60160 * 4 3 2 6 6 S 1.71200 * 119.99826 * 355.93822 * 5 4 3 7 7 N 1.34774 * 120.00269 * 175.93725 * 5 4 3 8 8 C 1.46499 * 119.99652 * 359.73033 * 7 5 4 9 9 C 1.46496 * 120.00061 * 179.97438 * 7 5 4 10 10 C 1.50698 * 109.47185 * 90.00295 * 9 7 5 11 11 H 1.07999 * 119.99612 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00075 * 179.97438 * 10 9 7 13 13 N 1.31511 * 120.00089 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99875 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47078 * 89.99972 * 14 12 10 16 16 H 1.48498 * 109.46687 * 210.00202 * 14 12 10 17 17 H 1.48506 * 109.46900 * 329.99816 * 14 12 10 18 18 C 1.41880 * 108.01281 * 179.69543 * 3 2 1 19 19 O 1.21779 * 126.16516 * 180.23827 * 18 3 2 20 20 N 1.34853 * 107.68414 * 0.26474 * 18 3 2 21 21 C 1.39826 * 126.11280 * 179.97438 * 20 18 3 22 22 C 1.38893 * 120.07553 * 130.40943 * 21 20 18 23 23 C 1.38104 * 119.92966 * 179.74701 * 22 21 20 24 24 C 1.38282 * 120.07359 * 0.51320 * 23 22 21 25 25 C 1.38293 * 120.14607 * 359.76219 * 24 23 22 26 26 C 1.38106 * 120.06828 * 359.97438 * 25 24 23 27 27 N 1.37196 * 125.83410 * 180.14054 * 2 1 3 28 28 C 1.46503 * 125.90849 * 0.02562 * 27 2 1 29 29 H 1.08992 * 109.47179 * 0.02772 * 1 2 3 30 30 H 1.09010 * 109.47090 * 120.02785 * 1 2 3 31 31 H 1.09000 * 109.47318 * 240.02021 * 1 2 3 32 32 H 0.97001 * 119.99857 * 56.59831 * 4 3 2 33 33 H 1.08999 * 109.47885 * 89.99632 * 8 7 5 34 34 H 1.09007 * 109.46901 * 209.99525 * 8 7 5 35 35 H 1.09005 * 109.47238 * 329.98758 * 8 7 5 36 36 H 1.09003 * 109.47136 * 210.00089 * 9 7 5 37 37 H 1.09001 * 109.47245 * 329.99945 * 9 7 5 38 38 H 0.96996 * 120.00021 * 180.02562 * 13 12 10 39 39 H 1.08001 * 120.03565 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.96283 * 180.25437 * 23 22 21 41 41 H 1.08003 * 119.93332 * 179.74410 * 24 23 22 42 42 H 1.08001 * 119.96486 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.03395 * 180.02562 * 26 25 24 44 44 H 1.08996 * 109.47148 * 265.44708 * 28 27 2 45 45 H 1.08997 * 109.47086 * 25.45472 * 28 27 2 46 46 H 1.09004 * 109.47096 * 145.45038 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0951 0.0000 4 7 1.8581 2.4347 -0.0008 5 6 2.2589 3.2750 -0.9753 6 16 3.3832 2.7458 -2.1529 7 7 1.7746 4.5318 -1.0228 8 6 0.8080 4.9827 -0.0186 9 6 2.2107 5.4453 -2.0818 10 6 1.2904 5.3152 -3.2680 11 1 0.4630 4.6217 -3.2359 12 6 1.5039 6.0823 -4.3936 13 7 2.5110 6.9271 -4.4323 14 14 0.3625 5.9215 -5.8637 15 1 -0.7612 6.8823 -5.7252 16 1 1.1154 6.2163 -7.1093 17 1 -0.1737 4.5380 -5.9250 18 6 3.6485 0.6610 0.0072 19 8 4.6334 1.3771 0.0133 20 7 3.6453 -0.6875 0.0054 21 6 4.7730 -1.5142 0.0103 22 6 4.8689 -2.5553 0.9247 23 6 5.9816 -3.3733 0.9234 24 6 7.0046 -3.1501 0.0201 25 6 6.9150 -2.1109 -0.8879 26 6 5.8024 -1.2927 -0.8955 27 7 2.3102 -1.1123 -0.0027 28 6 1.8512 -2.5035 -0.0067 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3634 -0.5143 -0.8898 31 1 -0.3634 -0.5135 0.8902 32 1 1.2671 2.7515 0.7001 33 1 1.3395 5.4143 0.8295 34 1 0.1523 5.7348 -0.4574 35 1 0.2126 4.1344 0.3193 36 1 2.1836 6.4701 -1.7115 37 1 3.2281 5.1943 -2.3820 38 1 2.6610 7.4669 -5.2241 39 1 4.0724 -2.7273 1.6335 40 1 6.0549 -4.1855 1.6314 41 1 7.8757 -3.7887 0.0238 42 1 7.7155 -1.9396 -1.5924 43 1 5.7328 -0.4815 -1.6051 44 1 1.8145 -2.8769 1.0167 45 1 0.8564 -2.5567 -0.4489 46 1 2.5415 -3.1122 -0.5909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003627098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:42 Heat of formation + Delta-G solvation = 97.942437 kcal Electronic energy + Delta-G solvation = -30017.773680 eV Core-core repulsion = 26036.441728 eV Total energy + Delta-G solvation = -3981.331952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.136 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.98295 -40.35549 -39.77756 -38.34115 -36.83814 -34.89509 -34.33582 -32.72308 -31.92146 -31.50680 -29.94245 -28.80210 -28.08956 -26.58430 -25.31172 -23.89120 -23.63265 -22.71969 -21.88666 -21.08559 -19.57294 -18.90641 -18.69451 -18.22370 -17.36189 -17.28210 -16.90561 -16.56159 -16.26764 -15.89408 -15.82705 -15.59776 -15.20728 -15.18969 -14.80689 -14.61197 -14.48621 -14.14201 -14.00757 -13.80036 -13.58658 -13.54026 -13.31825 -13.22112 -13.09655 -12.84610 -12.60678 -12.58450 -12.55112 -12.17645 -12.00061 -11.89101 -11.79420 -11.15992 -10.72021 -10.58931 -10.07974 -10.02474 -9.34562 -8.66396 -8.56075 -8.16350 -8.06176 -6.28381 -0.04727 0.31177 0.33386 0.52967 0.83954 1.23546 1.37057 1.42812 1.51958 1.71968 2.26195 2.32333 2.46066 2.69865 2.98981 3.15681 3.49215 3.80503 3.89843 3.94492 4.06739 4.11275 4.17742 4.34208 4.39962 4.42737 4.44783 4.50930 4.58160 4.66574 4.68452 4.71905 4.83962 4.90063 4.97058 5.00361 5.18602 5.25649 5.31072 5.36731 5.42134 5.48168 5.64511 5.79585 5.87171 6.00385 6.07784 6.13651 6.36103 6.61412 6.76310 7.33006 7.37434 8.91614 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.002893 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.911009 B = 9677.105062 C =10377.310717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.224 3.776 3 C -0.129 4.129 4 N -0.580 5.580 5 C 0.582 3.418 6 S -0.746 6.746 7 N -0.552 5.552 8 C 0.056 3.944 9 C 0.256 3.744 10 C -0.519 4.519 11 H 0.053 0.947 12 C 0.009 3.991 13 N -0.929 5.929 14 Si 0.968 3.032 15 H -0.259 1.259 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.531 3.469 19 O -0.559 6.559 20 N -0.380 5.380 21 C 0.129 3.871 22 C -0.122 4.122 23 C -0.095 4.095 24 C -0.113 4.113 25 C -0.109 4.109 26 C -0.136 4.136 27 N -0.377 5.377 28 C 0.088 3.912 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.417 0.583 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.032 0.968 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.150 0.850 40 H 0.172 0.828 41 H 0.162 0.838 42 H 0.138 0.862 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.132 0.868 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.900 -27.266 18.750 34.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 C -0.236 4.236 4 N -0.211 5.211 5 C 0.220 3.780 6 S -0.618 6.618 7 N -0.257 5.257 8 C -0.088 4.088 9 C 0.135 3.865 10 C -0.558 4.558 11 H 0.072 0.928 12 C -0.189 4.189 13 N -0.569 5.569 14 Si 0.793 3.207 15 H -0.184 1.184 16 H -0.213 1.213 17 H -0.199 1.199 18 C 0.327 3.673 19 O -0.436 6.436 20 N -0.194 5.194 21 C 0.039 3.961 22 C -0.142 4.142 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.157 4.157 27 N -0.170 5.170 28 C -0.050 4.050 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.260 0.740 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.168 0.832 40 H 0.189 0.811 41 H 0.180 0.820 42 H 0.156 0.844 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.150 0.850 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.487 -27.306 17.918 33.298 hybrid contribution -0.367 1.428 -0.676 1.622 sum -6.854 -25.878 17.242 31.842 Atomic orbital electron populations 1.20957 0.81521 1.06281 1.06662 1.21400 0.95286 0.83024 0.90024 1.16777 0.92453 0.83817 1.30546 1.40955 1.48725 1.06848 1.24595 1.21551 0.86089 0.83549 0.86771 1.93234 1.41915 1.83047 1.43592 1.47465 1.40017 1.09114 1.29105 1.22343 0.92464 1.02712 0.91255 1.19318 0.96904 0.86207 0.84070 1.21334 1.12310 1.22025 1.00139 0.92832 1.25764 0.97097 0.94853 1.01221 1.70064 1.30694 1.25747 1.30374 0.85408 0.78683 0.78480 0.78147 1.18419 1.21288 1.19922 1.17198 0.91067 0.80028 0.78972 1.90870 1.41529 1.56833 1.54417 1.45484 0.96434 1.05503 1.72000 1.17743 0.85939 0.94603 0.97865 1.21347 1.00996 0.95169 0.96713 1.21494 0.91763 0.99248 0.98772 1.21656 1.00173 0.96891 0.94405 1.21285 0.96420 0.94950 1.00114 1.21171 0.96425 1.00145 0.97991 1.46767 0.92254 1.06964 1.71050 1.22580 1.02725 0.74048 1.05615 0.89162 0.87439 0.84974 0.73988 0.89986 0.88793 0.88161 0.95037 0.95471 0.92639 0.83229 0.81055 0.82001 0.84391 0.89899 0.87768 0.84967 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 9.74 71.24 0.69 -0.19 16 2 C 0.22 4.86 6.97 40.99 0.29 5.15 16 3 C -0.13 -4.42 5.84 37.84 0.22 -4.20 16 4 N -0.58 -19.96 4.94 -189.55 -0.94 -20.90 16 5 C 0.58 27.18 7.64 179.06 1.37 28.55 16 6 S -0.75 -45.16 24.91 -56.49 -1.41 -46.57 16 7 N -0.55 -24.46 2.86 -739.20 -2.11 -26.57 16 8 C 0.06 1.59 10.16 127.77 1.30 2.89 16 9 C 0.26 14.37 4.92 85.63 0.42 14.79 16 10 C -0.52 -30.48 9.39 25.60 0.24 -30.24 16 11 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 12 C 0.01 0.56 5.46 84.66 0.46 1.02 16 13 N -0.93 -58.66 13.29 21.45 0.28 -58.37 16 14 Si 0.97 46.73 29.54 68.60 2.03 48.75 16 15 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 17 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 18 C 0.53 22.27 6.67 85.13 0.57 22.84 16 19 O -0.56 -29.91 15.73 -4.60 -0.07 -29.98 16 20 N -0.38 -12.00 3.64 -311.21 -1.13 -13.14 16 21 C 0.13 3.67 5.71 38.18 0.22 3.89 16 22 C -0.12 -2.17 8.99 22.39 0.20 -1.97 16 23 C -0.09 -1.22 10.04 22.25 0.22 -1.00 16 24 C -0.11 -1.73 10.04 22.29 0.22 -1.50 16 25 C -0.11 -2.55 10.04 22.25 0.22 -2.32 16 26 C -0.14 -4.44 9.31 22.40 0.21 -4.23 16 27 N -0.38 -7.70 4.06 -354.48 -1.44 -9.15 16 28 C 0.09 0.63 9.86 127.77 1.26 1.89 16 29 H 0.09 0.94 7.77 -2.39 -0.02 0.92 16 30 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.42 10.02 6.62 -92.71 -0.61 9.40 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 2.67 8.07 -2.38 -0.02 2.65 16 35 H 0.10 1.94 6.44 -2.38 -0.02 1.92 16 36 H 0.03 1.77 8.07 -2.39 -0.02 1.76 16 37 H 0.03 1.82 6.58 -2.39 -0.02 1.80 16 38 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.15 1.78 7.55 -2.91 -0.02 1.76 16 40 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 41 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.08 3.54 7.99 -2.91 -0.02 3.51 16 44 H 0.10 0.13 7.98 -2.39 -0.02 0.11 16 45 H 0.13 0.10 7.69 -2.39 -0.02 0.08 16 46 H 0.08 0.70 7.81 -2.38 -0.02 0.69 16 Total: -1.00 -110.33 398.36 3.72 -106.61 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.40 Total: 13.95 kcal Atomic # 6 Polarization: 27.24 SS G_CDS: 8.12 Total: 35.36 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -5.34 Total: -128.12 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.07 Total: -29.98 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Atomic # 16 Polarization: -45.16 SS G_CDS: -1.41 Total: -46.57 kcal Total: -110.33 3.72 -106.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003627098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.554 kcal (2) G-P(sol) polarization free energy of solvation -110.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds