Wall clock time and date at job start Tue Mar 31 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38406 * 119.82732 * 2 1 4 4 C 1.37877 * 120.17214 * 179.97438 * 3 2 1 5 5 C 1.39861 * 119.82695 * 0.02562 * 4 3 2 6 6 C 1.47162 * 120.17069 * 179.97438 * 5 4 3 7 7 O 1.21252 * 120.00511 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00001 * 180.02562 * 6 5 4 9 9 S 1.80991 * 109.47556 * 180.02562 * 8 6 5 10 10 C 1.76195 * 100.00425 * 179.97438 * 9 8 6 11 11 N 1.32597 * 119.18210 * 179.97438 * 10 9 8 12 12 C 1.32458 * 120.94524 * 179.97438 * 11 10 9 13 13 C 1.50699 * 120.35001 * 180.02562 * 12 11 10 14 14 C 1.38207 * 119.29609 * 0.05054 * 12 11 10 15 15 C 1.39705 * 118.48693 * 359.97361 * 14 12 11 16 16 S 1.76200 * 120.48805 * 179.97438 * 15 14 12 17 17 C 1.76196 * 99.99888 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99671 * 180.02562 * 17 16 15 20 20 N 1.31552 * 120.00021 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99552 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47443 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47102 * 120.00197 * 21 19 17 24 24 H 1.48504 * 109.46601 * 239.99649 * 21 19 17 25 25 N 1.32458 * 119.17176 * 359.97438 * 10 9 8 26 26 C 1.39850 * 119.65089 * 0.25371 * 5 4 3 27 27 C 1.37887 * 119.82699 * 359.46428 * 26 5 4 28 28 H 1.09004 * 109.46842 * 89.99598 * 1 2 3 29 29 H 1.08998 * 109.47085 * 209.99837 * 1 2 3 30 30 H 1.09004 * 109.46980 * 329.99997 * 1 2 3 31 31 H 1.08000 * 119.90764 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.08778 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47202 * 59.99581 * 8 6 5 34 34 H 1.09008 * 109.47075 * 300.00208 * 8 6 5 35 35 H 1.09003 * 109.47047 * 270.00159 * 13 12 11 36 36 H 1.08992 * 109.47292 * 30.00168 * 13 12 11 37 37 H 1.08999 * 109.47174 * 150.00390 * 13 12 11 38 38 H 1.07999 * 120.75551 * 180.24869 * 14 12 11 39 39 H 0.97001 * 119.99842 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.08343 * 179.73113 * 26 5 4 41 41 H 1.08005 * 119.90940 * 180.25715 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2007 0.0000 4 6 3.5742 1.2090 0.0005 5 6 4.2772 -0.0001 0.0005 6 6 5.7488 -0.0001 0.0005 7 8 6.3551 1.0499 0.0010 8 6 6.5023 -1.3052 -0.0001 9 16 8.2818 -0.9746 0.0009 10 6 8.8997 -2.6246 0.0008 11 7 10.2106 -2.8241 0.0008 12 6 10.7130 -4.0497 0.0013 13 6 12.2051 -4.2609 0.0019 14 6 9.8543 -5.1326 0.0006 15 6 8.4782 -4.8919 0.0001 16 16 7.3359 -6.2334 -0.0015 17 6 5.8164 -5.3415 -0.0024 18 1 5.8242 -4.2615 -0.0024 19 6 4.6094 -6.0269 -0.0032 20 7 4.6000 -7.3424 -0.0027 21 14 2.9984 -5.0812 -0.0049 22 1 3.2803 -3.6232 -0.0046 23 1 2.2182 -5.4348 -1.2178 24 1 2.2162 -5.4340 1.2071 25 7 8.0430 -3.6349 0.0006 26 6 3.5742 -1.2091 -0.0054 27 6 2.1953 -1.2007 0.0000 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6512 2.1335 -0.0004 32 1 4.1100 2.1467 0.0001 33 1 6.2389 -1.8764 -0.8903 34 1 6.2389 -1.8772 0.8897 35 1 12.5653 -4.3120 -1.0257 36 1 12.6894 -3.4306 0.5157 37 1 12.4399 -5.1929 0.5159 38 1 10.2384 -6.1420 0.0050 39 1 3.7564 -7.8213 -0.0036 40 1 4.1099 -2.1468 -0.0098 41 1 1.6511 -2.1336 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004130468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:18 Heat of formation + Delta-G solvation = 19.739511 kcal Electronic energy + Delta-G solvation = -26055.668257 eV Core-core repulsion = 22345.572197 eV Total energy + Delta-G solvation = -3710.096060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.071 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.10652 -39.95890 -38.41771 -33.84251 -33.19758 -32.86348 -31.80962 -31.40115 -30.10857 -28.13472 -27.20821 -25.98710 -24.04986 -22.76437 -22.59337 -22.47820 -20.02797 -18.41050 -17.57782 -17.20515 -16.63239 -15.76313 -15.48604 -15.37171 -15.30725 -15.04804 -14.65776 -14.60501 -14.60025 -14.04555 -13.93142 -13.80544 -13.52611 -12.96399 -12.93427 -12.61658 -12.54250 -12.40258 -12.13748 -12.00668 -11.81623 -11.38852 -11.37257 -11.20214 -10.92434 -10.60382 -10.53834 -10.19310 -10.10027 -9.86253 -9.54536 -9.33532 -9.09663 -9.01808 -8.85743 -8.52272 -7.47916 -7.04004 -6.64400 -4.37591 0.54089 1.28789 1.42730 1.52203 1.67057 2.28878 2.31649 2.80788 3.00036 3.03974 3.08303 3.67533 3.80150 3.91394 4.19723 4.58738 4.61386 4.70516 4.80967 4.87412 4.93250 4.98321 5.15302 5.26905 5.26975 5.30857 5.35548 5.52901 5.55718 5.59106 5.69211 5.70697 5.73339 5.78338 5.85519 5.92203 6.04466 6.19151 6.22689 6.26352 6.41349 6.78393 6.83621 7.37378 7.37889 7.60600 8.19223 8.54886 8.85791 10.42970 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.004145 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.007550 B = 6753.124321 C = 9953.381648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.054 4.054 3 C -0.139 4.139 4 C -0.055 4.055 5 C -0.170 4.170 6 C 0.418 3.582 7 O -0.443 6.443 8 C -0.169 4.169 9 S 0.033 5.967 10 C 0.302 3.698 11 N -0.544 5.544 12 C 0.185 3.815 13 C -0.097 4.097 14 C -0.246 4.246 15 C 0.151 3.849 16 S 0.134 5.866 17 C -0.538 4.538 18 H 0.107 0.893 19 C 0.075 3.925 20 N -0.869 5.869 21 Si 0.912 3.088 22 H -0.245 1.245 23 H -0.278 1.278 24 H -0.278 1.278 25 N -0.529 5.529 26 C -0.064 4.064 27 C -0.134 4.134 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.138 0.862 39 H 0.275 0.725 40 H 0.149 0.851 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 9.960 -0.040 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.055 4.055 3 C -0.157 4.157 4 C -0.073 4.073 5 C -0.173 4.173 6 C 0.295 3.705 7 O -0.318 6.318 8 C -0.318 4.318 9 S 0.267 5.733 10 C -0.079 4.079 11 N -0.267 5.267 12 C 0.038 3.962 13 C -0.155 4.155 14 C -0.281 4.281 15 C -0.106 4.106 16 S 0.381 5.619 17 C -0.687 4.687 18 H 0.125 0.875 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.738 3.262 22 H -0.170 1.170 23 H -0.204 1.204 24 H -0.204 1.204 25 N -0.254 5.254 26 C -0.082 4.082 27 C -0.152 4.152 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.167 0.833 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.954 11.006 -0.036 11.178 hybrid contribution -1.575 -0.762 -0.019 1.750 sum -3.530 10.244 -0.055 10.835 Atomic orbital electron populations 1.20895 0.90921 1.03148 1.02725 1.20243 0.96377 0.93182 0.95655 1.20969 0.93845 0.97679 1.03223 1.21363 0.94016 0.97552 0.94394 1.20260 0.93791 0.94560 1.08685 1.21844 0.88504 0.89009 0.71188 1.90532 1.70721 1.34246 1.36305 1.24139 0.96369 1.01172 1.10118 1.85862 0.99168 0.96565 1.91673 1.24863 0.89143 0.98855 0.95063 1.68199 1.12899 1.24223 1.21413 1.21314 0.96637 0.88046 0.90166 1.20661 0.89029 1.02799 1.03004 1.22034 0.93425 1.00628 1.11993 1.24668 0.96790 0.97150 0.91958 1.83677 0.96907 1.01654 1.79619 1.23378 0.89778 0.97280 1.58220 0.87526 1.25181 0.99815 0.95172 0.93368 1.69933 1.28253 1.06504 1.45600 0.86299 0.80902 0.80894 0.78149 1.16979 1.20366 1.20367 1.69269 1.36673 0.98688 1.20783 1.22038 0.94779 0.98152 0.93228 1.21116 0.94250 0.97836 1.01960 0.90654 0.91117 0.91232 0.85470 0.84848 0.85021 0.85015 0.90322 0.90533 0.90552 0.84424 0.91553 0.83342 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.00 36.01 0.36 -0.60 16 2 C -0.05 -0.60 5.89 -104.50 -0.62 -1.21 16 3 C -0.14 -1.48 9.68 -39.65 -0.38 -1.87 16 4 C -0.05 -0.68 9.60 -39.11 -0.38 -1.06 16 5 C -0.17 -2.41 5.87 -105.06 -0.62 -3.02 16 6 C 0.42 6.47 7.14 -30.69 -0.22 6.25 16 7 O -0.44 -7.57 15.86 5.58 0.09 -7.48 16 8 C -0.17 -2.77 3.90 36.01 0.14 -2.63 16 9 S 0.03 0.59 21.38 -107.50 -2.30 -1.71 16 10 C 0.30 6.18 7.85 -90.89 -0.71 5.47 16 11 N -0.54 -10.76 10.33 -9.74 -0.10 -10.86 16 12 C 0.19 3.26 6.82 -82.33 -0.56 2.70 16 13 C -0.10 -1.20 10.21 36.01 0.37 -0.84 16 14 C -0.25 -4.58 9.62 -39.05 -0.38 -4.96 16 15 C 0.15 3.29 7.00 -16.49 -0.12 3.17 16 16 S 0.13 3.15 21.67 -107.50 -2.33 0.82 16 17 C -0.54 -13.43 9.27 30.94 0.29 -13.15 16 18 H 0.11 2.58 6.57 -52.49 -0.34 2.24 16 19 C 0.07 1.85 5.49 -17.46 -0.10 1.75 16 20 N -0.87 -22.84 13.22 55.49 0.73 -22.10 16 21 Si 0.91 18.04 29.37 -169.99 -4.99 13.04 16 22 H -0.25 -4.20 3.24 56.52 0.18 -4.02 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 N -0.53 -11.52 7.31 -12.23 -0.09 -11.61 16 26 C -0.06 -0.91 8.96 -39.11 -0.35 -1.27 16 27 C -0.13 -1.73 9.33 -39.65 -0.37 -2.10 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.54 7.65 -52.49 -0.40 1.14 16 33 H 0.13 2.19 8.05 -51.91 -0.42 1.77 16 34 H 0.13 2.19 8.06 -51.91 -0.42 1.77 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 40 H 0.15 2.26 4.89 -52.49 -0.26 2.01 16 41 H 0.13 1.55 7.42 -52.48 -0.39 1.16 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -29.61 378.98 -11.87 -41.49 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.96 Total: 6.05 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -3.64 Total: -13.35 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.54 Total: -44.57 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.09 Total: -7.48 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -4.99 Total: 13.04 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -4.63 Total: -0.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.61 -11.87 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004130468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.225 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds