Wall clock time and date at job start Tue Mar 31 2020 07:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31257 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48501 * 109.47105 * 275.36143 * 3 2 1 5 5 H 1.48501 * 109.46933 * 35.36036 * 3 2 1 6 6 H 1.48495 * 109.47290 * 155.35881 * 3 2 1 7 7 C 1.39066 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99467 * 341.07447 * 7 2 1 9 9 N 1.37175 * 120.00112 * 161.07158 * 7 2 1 10 10 C 1.36046 * 119.84786 * 329.57109 * 9 7 2 11 11 N 1.30149 * 122.80612 * 180.29612 * 10 9 7 12 12 C 1.34016 * 121.87138 * 359.70167 * 11 10 9 13 13 C 1.40116 * 119.56854 * 359.97438 * 12 11 10 14 14 N 1.34043 * 108.07878 * 180.02562 * 13 12 11 15 15 N 1.28776 * 110.05986 * 0.02562 * 14 13 12 16 16 N 1.36555 * 134.39945 * 180.02562 * 12 11 10 17 17 C 1.40143 * 126.69375 * 359.94424 * 16 12 11 18 18 C 1.38859 * 120.05564 * 324.73462 * 17 16 12 19 19 C 1.38100 * 119.93919 * 179.71722 * 18 17 16 20 20 C 1.38376 * 120.05963 * 0.57417 * 19 18 17 21 21 Br 1.89091 * 119.94416 * 179.70179 * 20 19 18 22 22 C 1.38372 * 120.11361 * 359.67499 * 20 19 18 23 23 C 1.38103 * 120.05789 * 0.05004 * 22 20 19 24 24 C 1.35300 * 119.84591 * 149.27726 * 9 7 2 25 25 O 1.21820 * 121.19293 * 0.03127 * 24 9 7 26 26 H 0.97005 * 119.99580 * 0.02562 * 1 2 3 27 27 H 1.07994 * 118.59745 * 359.97438 * 10 9 7 28 28 H 1.08001 * 120.02836 * 359.97438 * 18 17 16 29 29 H 1.08002 * 119.97471 * 180.27500 * 19 18 17 30 30 H 1.07998 * 119.96704 * 180.02562 * 22 20 19 31 31 H 1.07998 * 120.02961 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3809 2.1118 -1.3940 5 1 1.5053 2.6173 0.8103 6 1 3.5962 1.4101 0.5837 7 6 2.0079 -1.2043 -0.0005 8 1 1.5116 -2.1144 0.3024 9 7 3.3240 -1.2363 -0.3859 10 6 3.7820 -0.3450 -1.3061 11 7 5.0168 -0.3273 -1.7169 12 6 5.9298 -1.1910 -1.2517 13 6 5.5557 -2.1441 -0.2953 14 7 6.6359 -2.8791 0.0042 15 7 7.6499 -2.4719 -0.6771 16 7 7.2575 -1.3998 -1.4930 17 6 8.0699 -0.6833 -2.3821 18 6 7.5449 -0.2118 -3.5781 19 6 8.3461 0.4990 -4.4498 20 6 9.6741 0.7314 -4.1379 21 35 10.7703 1.6979 -5.3378 22 6 10.2011 0.2582 -2.9492 23 6 9.4027 -0.4483 -2.0713 24 6 4.1621 -2.1503 0.1553 25 8 3.7704 -2.9528 0.9839 26 1 -0.4850 0.8401 -0.0004 27 1 3.0901 0.3753 -1.7169 28 1 6.5099 -0.3973 -3.8243 29 1 7.9372 0.8698 -5.3781 30 1 11.2377 0.4413 -2.7079 31 1 9.8146 -0.8178 -1.1438 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004341825.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:15 Heat of formation + Delta-G solvation = 136.079899 kcal Electronic energy + Delta-G solvation = -22871.927758 eV Core-core repulsion = 19202.852984 eV Total energy + Delta-G solvation = -3669.074774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 360.992 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.09993 -40.18294 -39.24711 -36.92420 -34.80658 -34.45505 -32.69200 -31.58611 -31.39617 -29.66309 -28.70721 -26.45728 -24.91873 -23.60147 -23.31075 -22.43686 -20.81094 -19.49174 -18.83304 -17.68140 -17.02432 -16.54174 -16.23917 -15.86190 -15.43967 -14.72512 -14.55091 -14.31236 -14.02331 -13.85708 -13.74730 -13.48668 -13.10287 -12.61614 -12.22330 -12.16365 -11.71679 -11.58776 -11.54309 -11.43591 -11.13129 -10.61898 -10.54361 -10.53882 -10.17161 -9.72101 -9.47666 -9.33574 -9.25348 -8.52165 -7.97347 -7.37921 -4.96689 0.32834 1.02682 1.15074 1.34549 1.99961 2.07516 2.55059 2.60340 2.77836 2.80272 3.20453 3.33612 3.38885 3.82608 4.20258 4.35692 4.46494 4.59941 4.64075 4.84473 4.95033 5.01975 5.27542 5.37623 5.61149 5.70247 5.76815 5.92448 5.98036 6.23659 6.32798 6.56970 6.76457 7.09278 7.46051 7.79824 7.96316 8.25536 8.40972 8.62339 9.66403 Molecular weight = 360.99amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.002846 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.583797 B = 9836.857677 C =11155.142932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.072 3.928 3 Si 0.868 3.132 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.251 1.251 7 C -0.321 4.321 8 H 0.142 0.858 9 N -0.346 5.346 10 C 0.316 3.684 11 N -0.555 5.555 12 C 0.318 3.682 13 C -0.179 4.179 14 N -0.151 5.151 15 N -0.061 5.061 16 N -0.347 5.347 17 C 0.182 3.818 18 C -0.105 4.105 19 C -0.070 4.070 20 C -0.099 4.099 21 Br -0.051 7.051 22 C -0.074 4.074 23 C -0.109 4.109 24 C 0.555 3.445 25 O -0.500 6.500 26 H 0.297 0.703 27 H 0.200 0.800 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.291 8.063 -11.523 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.146 4.146 3 Si 0.691 3.309 4 H -0.176 1.176 5 H -0.188 1.188 6 H -0.174 1.174 7 C -0.451 4.451 8 H 0.159 0.841 9 N -0.046 5.046 10 C 0.037 3.963 11 N -0.289 5.289 12 C 0.075 3.925 13 C -0.319 4.319 14 N -0.027 5.027 15 N -0.041 5.041 16 N -0.135 5.135 17 C 0.089 3.911 18 C -0.127 4.127 19 C -0.090 4.090 20 C -0.179 4.179 21 Br 0.034 6.966 22 C -0.094 4.094 23 C -0.130 4.130 24 C 0.348 3.652 25 O -0.372 6.372 26 H 0.109 0.891 27 H 0.216 0.784 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 16.549 7.495 -11.417 21.457 hybrid contribution -0.958 0.843 0.576 1.400 sum 15.591 8.338 -10.842 20.740 Atomic orbital electron populations 1.69576 1.06439 1.30717 1.35075 1.25541 0.95784 0.99231 0.94045 0.86906 0.81427 0.82029 0.80578 1.17557 1.18842 1.17434 1.19930 0.81115 0.99339 1.44698 0.84076 1.42928 1.11121 1.23598 1.26915 1.24480 0.91328 0.93459 0.87082 1.67027 0.99985 1.28546 1.33299 1.19391 0.85767 0.93562 0.93807 1.21996 0.96332 1.04402 1.09219 1.73914 0.96483 1.18494 1.13768 1.82016 1.16678 0.99786 1.05633 1.46814 1.04953 1.27719 1.33990 1.17556 0.90340 0.94399 0.88791 1.21172 1.01618 0.98535 0.91384 1.20946 0.91303 0.97001 0.99760 1.21817 0.95162 1.04299 0.96655 1.96711 1.66724 1.73027 1.60140 1.20932 1.00255 0.96398 0.91846 1.20992 0.91875 0.99262 1.00866 1.17093 0.82743 0.83213 0.82190 1.90810 1.77308 1.37708 1.31393 0.89114 0.78428 0.83352 0.84013 0.84137 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.86 13.95 55.50 0.77 -17.09 16 2 C 0.07 1.57 5.30 -17.49 -0.09 1.47 16 3 Si 0.87 16.13 24.67 -169.99 -4.19 11.94 16 4 H -0.25 -4.14 6.74 56.52 0.38 -3.76 16 5 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.25 -4.99 6.91 56.52 0.39 -4.60 16 7 C -0.32 -7.56 9.55 -14.85 -0.14 -7.70 16 8 H 0.14 3.65 7.81 -52.49 -0.41 3.24 16 9 N -0.35 -7.81 2.54 -63.95 -0.16 -7.97 16 10 C 0.32 6.25 8.65 -89.74 -0.78 5.47 16 11 N -0.55 -10.78 9.63 -13.30 -0.13 -10.91 16 12 C 0.32 6.52 7.59 -155.58 -1.18 5.34 16 13 C -0.18 -4.08 7.48 -82.89 -0.62 -4.70 16 14 N -0.15 -3.36 12.35 33.21 0.41 -2.95 16 15 N -0.06 -1.21 13.53 60.35 0.82 -0.39 16 16 N -0.35 -6.44 3.79 -9.92 -0.04 -6.47 16 17 C 0.18 2.74 6.43 -83.60 -0.54 2.21 16 18 C -0.11 -1.39 9.43 -39.40 -0.37 -1.76 16 19 C -0.07 -0.75 9.78 -39.58 -0.39 -1.14 16 20 C -0.10 -1.03 6.23 -39.48 -0.25 -1.28 16 21 Br -0.05 -0.47 33.70 -68.01 -2.29 -2.76 16 22 C -0.07 -0.76 9.78 -39.58 -0.39 -1.15 16 23 C -0.11 -1.35 9.79 -39.40 -0.39 -1.74 16 24 C 0.55 13.45 7.61 -12.71 -0.10 13.35 16 25 O -0.50 -13.38 17.05 5.08 0.09 -13.29 16 26 H 0.30 5.99 8.31 -40.82 -0.34 5.65 16 27 H 0.20 3.47 4.57 -52.49 -0.24 3.23 16 28 H 0.15 2.03 7.31 -52.49 -0.38 1.64 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -26.35 301.75 -6.87 -33.22 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -1.47 Total: 3.75 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: -5.22 Total: 8.37 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 1.67 Total: -45.78 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: -4.19 Total: 11.94 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.76 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.35 -6.87 -33.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004341825.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.302 kcal (2) G-P(sol) polarization free energy of solvation -26.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds