Wall clock time and date at job start Tue Mar 31 2020 05:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99743 * 2 1 4 4 C 1.50697 * 109.47046 * 270.00222 * 3 2 1 5 5 H 1.08003 * 120.00394 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99863 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00171 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99813 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47289 * 90.00225 * 8 6 4 10 10 H 1.48505 * 109.47152 * 209.99800 * 8 6 4 11 11 H 1.48499 * 109.47510 * 329.99860 * 8 6 4 12 12 C 1.39362 * 120.00100 * 180.02562 * 2 1 3 13 13 C 1.39146 * 119.91347 * 0.02562 * 12 2 1 14 14 C 1.37685 * 120.09026 * 180.02562 * 13 12 2 15 15 C 1.39882 * 119.90711 * 359.97438 * 14 13 12 16 16 C 1.47197 * 120.08327 * 180.02562 * 15 14 13 17 17 C 1.34496 * 120.00022 * 179.97438 * 16 15 14 18 18 C 1.47119 * 120.00172 * 185.61566 * 17 16 15 19 19 C 1.40794 * 119.29859 * 5.43562 * 18 17 16 20 20 C 1.36150 * 119.81566 * 180.02562 * 19 18 17 21 21 C 1.41039 * 118.34992 * 359.97438 * 20 19 18 22 22 C 1.40311 * 121.19739 * 180.02562 * 21 20 19 23 23 C 1.36232 * 119.67085 * 179.97438 * 22 21 20 24 24 C 1.39319 * 120.87345 * 359.97438 * 23 22 21 25 25 C 1.36105 * 121.03708 * 0.02562 * 24 23 22 26 26 C 1.40673 * 119.75262 * 359.75888 * 25 24 23 27 27 N 1.32285 * 119.30168 * 185.45172 * 18 17 16 28 28 C 1.46502 * 119.38684 * 359.96247 * 27 18 17 29 29 C 1.39877 * 119.82792 * 0.27222 * 15 14 13 30 30 C 1.37688 * 119.90626 * 359.42697 * 29 15 14 31 31 H 1.09002 * 109.46586 * 269.99599 * 1 2 3 32 32 H 1.08994 * 109.47360 * 30.00078 * 1 2 3 33 33 H 1.08996 * 109.46985 * 150.00065 * 1 2 3 34 34 H 1.09000 * 109.46951 * 30.00141 * 3 2 1 35 35 H 1.08997 * 109.46672 * 150.00287 * 3 2 1 36 36 H 0.97000 * 120.00226 * 180.02562 * 7 6 4 37 37 H 1.08001 * 119.95564 * 359.97438 * 13 12 2 38 38 H 1.07999 * 120.04405 * 180.02562 * 14 13 12 39 39 H 1.08006 * 120.00198 * 359.97438 * 16 15 14 40 40 H 1.07997 * 119.99980 * 5.61726 * 17 16 15 41 41 H 1.08006 * 120.09499 * 359.97438 * 19 18 17 42 42 H 1.07994 * 120.82092 * 179.97438 * 20 19 18 43 43 H 1.08000 * 120.16267 * 359.95884 * 22 21 20 44 44 H 1.07998 * 119.56253 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.47982 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.12642 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.47214 * 85.44654 * 28 27 18 48 48 H 1.08997 * 109.47362 * 325.44410 * 28 27 18 49 49 H 1.09006 * 109.46812 * 205.44386 * 28 27 18 50 50 H 1.07996 * 120.03949 * 179.70364 * 29 15 14 51 51 H 1.07999 * 119.94942 * 180.26700 * 30 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6732 8 14 3.4386 3.4164 -3.4339 9 1 2.3090 4.2597 -3.9010 10 1 4.6992 4.1990 -3.4963 11 1 3.5557 2.2192 -4.3046 12 6 2.1619 -1.2069 -0.0005 13 6 1.4644 -2.4109 -0.0016 14 6 2.1491 -3.6054 -0.0016 15 6 3.5479 -3.6074 -0.0011 16 6 4.2839 -4.8822 -0.0017 17 6 5.6289 -4.8822 -0.0017 18 6 6.3645 -6.1501 -0.1269 19 6 5.6505 -7.3407 -0.3614 20 6 6.3206 -8.5200 -0.4785 21 6 7.7259 -8.5065 -0.3596 22 6 8.4761 -9.6870 -0.4708 23 6 9.8323 -9.6379 -0.3513 24 6 10.4864 -8.4297 -0.1203 25 6 9.7906 -7.2655 -0.0071 26 6 8.3892 -7.2751 -0.1292 27 7 7.6828 -6.1474 -0.0165 28 6 8.3812 -4.8828 0.2271 29 6 4.2454 -2.3950 0.0052 30 6 3.5532 -1.2048 -0.0011 31 1 -0.3632 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6084 2.0284 0.5139 35 1 3.1499 1.1384 0.5138 36 1 4.0309 4.4436 -0.8504 37 1 0.3843 -2.4084 -0.0016 38 1 1.6070 -4.5395 -0.0029 39 1 3.7439 -5.8176 -0.0021 40 1 6.1689 -3.9514 0.0903 41 1 4.5741 -7.3186 -0.4473 42 1 5.7893 -9.4429 -0.6580 43 1 7.9809 -10.6298 -0.6500 44 1 10.4081 -10.5475 -0.4376 45 1 11.5625 -8.4169 -0.0289 46 1 10.3126 -6.3372 0.1724 47 1 8.3987 -4.6777 1.2975 48 1 7.8617 -4.0755 -0.2891 49 1 9.4029 -4.9543 -0.1459 50 1 5.3254 -2.3926 0.0105 51 1 4.0911 -0.2682 -0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004361492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:34 Heat of formation + Delta-G solvation = 213.823113 kcal Electronic energy + Delta-G solvation = -29691.234208 eV Core-core repulsion = 25832.512445 eV Total energy + Delta-G solvation = -3858.721763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.182 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.40097 -40.57085 -40.13521 -37.89771 -37.37623 -35.54295 -33.67986 -32.82789 -32.45486 -31.97205 -30.40676 -29.85708 -28.90234 -27.19501 -26.35711 -25.68018 -24.17194 -23.83628 -23.45656 -22.05984 -21.12274 -20.29645 -20.08688 -19.16362 -18.36451 -18.02317 -17.60204 -17.45680 -17.18935 -16.72038 -16.46051 -16.24939 -15.92835 -15.68110 -15.38171 -15.22262 -15.04306 -14.97722 -14.79360 -14.47714 -14.34169 -14.23917 -13.93907 -13.58649 -13.56678 -13.36176 -13.19431 -13.07466 -12.91139 -12.55333 -12.52574 -12.30261 -12.16944 -11.84388 -11.61975 -11.30365 -11.12547 -10.90997 -10.69619 -10.52923 -9.80373 -9.74049 -9.38626 -7.69031 -6.97497 -5.11102 -2.45528 -1.62685 -0.69059 -0.18139 0.02005 0.60593 0.75989 1.39058 1.68366 1.90886 2.06998 2.27443 2.34652 2.53278 2.61364 2.62149 2.63753 2.80797 2.89735 2.94432 3.04042 3.13982 3.16089 3.17383 3.28304 3.40928 3.51263 3.55656 3.56924 3.64043 3.68752 3.83216 3.91309 3.99231 4.04358 4.19938 4.25949 4.28961 4.33454 4.38959 4.41300 4.52606 4.66302 4.70890 4.72707 4.88014 4.98852 5.00235 5.16484 5.31547 5.53497 5.62613 5.72018 5.92024 6.13587 6.25963 6.78577 6.99220 7.10070 7.14890 7.95361 8.58872 10.06071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.576 5.576 3 C 0.237 3.763 4 C -0.548 4.548 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.285 3.715 13 C -0.231 4.231 14 C -0.013 4.013 15 C -0.217 4.217 16 C 0.097 3.903 17 C -0.289 4.289 18 C 0.297 3.703 19 C -0.179 4.179 20 C 0.024 3.976 21 C -0.104 4.104 22 C -0.060 4.060 23 C -0.116 4.116 24 C -0.043 4.043 25 C -0.151 4.151 26 C 0.144 3.856 27 N -0.383 5.383 28 C 0.015 3.985 29 C -0.024 4.024 30 C -0.196 4.196 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.270 0.730 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.176 0.824 42 H 0.170 0.830 43 H 0.153 0.847 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.113 0.887 48 H 0.121 0.879 49 H 0.114 0.886 50 H 0.120 0.880 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.822 -36.952 4.622 40.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.271 5.271 3 C 0.118 3.882 4 C -0.586 4.586 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.168 3.832 13 C -0.253 4.253 14 C -0.033 4.033 15 C -0.220 4.220 16 C 0.076 3.924 17 C -0.310 4.310 18 C 0.169 3.831 19 C -0.197 4.197 20 C 0.001 3.999 21 C -0.105 4.105 22 C -0.078 4.078 23 C -0.134 4.134 24 C -0.063 4.063 25 C -0.170 4.170 26 C 0.037 3.963 27 N -0.046 5.046 28 C -0.124 4.124 29 C -0.044 4.044 30 C -0.218 4.218 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.193 0.807 42 H 0.188 0.812 43 H 0.170 0.830 44 H 0.164 0.836 45 H 0.167 0.833 46 H 0.169 0.831 47 H 0.131 0.869 48 H 0.139 0.861 49 H 0.132 0.868 50 H 0.137 0.863 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.978 -36.246 4.725 39.502 hybrid contribution 0.169 0.597 -1.005 1.181 sum 15.147 -35.649 3.720 38.912 Atomic orbital electron populations 1.21813 0.79994 1.03319 1.01175 1.47746 1.05872 1.05422 1.68040 1.19636 0.92357 0.78061 0.98129 1.21376 1.38189 1.07396 0.91675 0.92015 1.24960 0.94873 0.95938 0.97917 1.69888 1.37138 1.14261 1.31120 0.86458 0.78280 0.78881 0.83677 1.20150 1.20748 1.19824 1.18423 0.91854 0.86391 0.86554 1.20707 1.00193 0.91023 1.13409 1.20986 0.92479 0.97497 0.92322 1.18332 0.93281 0.91458 1.18954 1.22591 0.92917 0.97873 0.79020 1.21633 0.95190 0.93485 1.20694 1.20264 0.82176 0.96985 0.83627 1.21635 1.03012 0.89742 1.05338 1.22057 0.92400 0.99974 0.85501 1.18209 0.94078 0.92609 1.05588 1.21229 0.94356 0.96927 0.95329 1.21299 0.94772 0.99242 0.98079 1.21237 1.01793 0.91380 0.91863 1.21065 0.89824 1.01253 1.04820 1.18172 0.93099 0.85336 0.99704 1.42157 1.06223 1.10296 1.45944 1.23291 1.00166 0.82444 1.06505 1.21020 0.98796 0.91163 0.93425 1.20993 0.92590 0.99514 1.08741 0.92913 0.90073 0.91712 0.94067 0.94020 0.92014 0.85382 0.85851 0.85285 0.83243 0.80661 0.81234 0.82976 0.83596 0.83344 0.83065 0.86857 0.86107 0.86765 0.86253 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 10.18 59.85 0.61 1.05 16 2 N -0.58 -4.92 2.98 -180.95 -0.54 -5.46 16 3 C 0.24 3.12 4.90 -5.19 -0.03 3.09 16 4 C -0.55 -8.85 9.39 -34.44 -0.32 -9.17 16 5 H 0.06 1.02 7.81 -52.48 -0.41 0.61 16 6 C 0.07 1.18 5.46 -17.82 -0.10 1.09 16 7 N -0.89 -16.73 13.29 55.43 0.74 -15.99 16 8 Si 0.90 13.25 29.54 -169.99 -5.02 8.22 16 9 H -0.28 -4.18 7.11 56.52 0.40 -3.78 16 10 H -0.28 -4.20 7.11 56.52 0.40 -3.80 16 11 H -0.27 -3.93 7.11 56.52 0.40 -3.52 16 12 C 0.28 1.70 6.56 -83.77 -0.55 1.15 16 13 C -0.23 -0.58 9.18 -39.45 -0.36 -0.94 16 14 C -0.01 0.01 9.78 -39.17 -0.38 -0.37 16 15 C -0.22 0.42 5.87 -105.03 -0.62 -0.20 16 16 C 0.10 -0.66 9.25 -37.27 -0.34 -1.01 16 17 C -0.29 2.40 8.55 -37.30 -0.32 2.08 16 18 C 0.30 -2.93 6.60 -83.10 -0.55 -3.47 16 19 C -0.18 2.00 9.32 -39.37 -0.37 1.63 16 20 C 0.02 -0.28 9.87 -39.27 -0.39 -0.67 16 21 C -0.10 1.07 5.75 -106.71 -0.61 0.46 16 22 C -0.06 0.65 9.76 -39.52 -0.39 0.27 16 23 C -0.12 1.23 9.96 -39.90 -0.40 0.83 16 24 C -0.04 0.46 9.94 -39.95 -0.40 0.07 16 25 C -0.15 1.60 9.13 -39.43 -0.36 1.24 16 26 C 0.14 -1.44 6.47 -84.86 -0.55 -1.99 16 27 N -0.38 3.98 2.87 -118.12 -0.34 3.65 16 28 C 0.01 -0.18 9.45 59.85 0.57 0.39 16 29 C -0.02 -0.01 9.39 -39.17 -0.37 -0.38 16 30 C -0.20 -1.01 9.18 -39.45 -0.36 -1.37 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.06 0.20 6.17 -51.93 -0.32 -0.12 16 34 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.04 0.58 6.18 -51.93 -0.32 0.26 16 36 H 0.27 4.86 8.31 -40.82 -0.34 4.52 16 37 H 0.13 0.17 6.11 -52.49 -0.32 -0.15 16 38 H 0.12 -0.51 8.06 -52.49 -0.42 -0.93 16 39 H 0.13 -1.30 6.09 -52.48 -0.32 -1.62 16 40 H 0.15 -1.29 4.11 -52.49 -0.22 -1.51 16 41 H 0.18 -2.30 6.17 -52.48 -0.32 -2.63 16 42 H 0.17 -2.44 8.06 -52.49 -0.42 -2.86 16 43 H 0.15 -1.96 8.06 -52.49 -0.42 -2.39 16 44 H 0.15 -1.73 8.06 -52.49 -0.42 -2.16 16 45 H 0.15 -1.80 8.06 -52.48 -0.42 -2.22 16 46 H 0.15 -1.91 6.01 -52.49 -0.32 -2.22 16 47 H 0.11 -1.45 8.14 -51.93 -0.42 -1.87 16 48 H 0.12 -1.47 6.12 -51.93 -0.32 -1.78 16 49 H 0.11 -1.53 5.81 -51.93 -0.30 -1.84 16 50 H 0.12 -0.33 6.17 -52.49 -0.32 -0.66 16 51 H 0.14 1.11 6.12 -52.49 -0.32 0.79 16 LS Contribution 407.84 15.07 6.15 6.15 Total: 0.00 -27.08 407.84 -12.34 -39.43 By element: Atomic # 1 Polarization: -23.02 SS G_CDS: -6.74 Total: -29.77 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -6.58 Total: -6.22 kcal Atomic # 7 Polarization: -17.67 SS G_CDS: -0.14 Total: -17.81 kcal Atomic # 14 Polarization: 13.25 SS G_CDS: -5.02 Total: 8.22 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -27.08 -12.34 -39.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004361492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.249 kcal (2) G-P(sol) polarization free energy of solvation -27.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 226.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds