Wall clock time and date at job start Tue Mar 31 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99743 * 2 1 4 4 C 1.50697 * 109.47046 * 270.00222 * 3 2 1 5 5 H 1.08003 * 120.00394 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99863 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00171 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99813 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47289 * 90.00225 * 8 6 4 10 10 H 1.48505 * 109.47152 * 209.99800 * 8 6 4 11 11 H 1.48499 * 109.47510 * 329.99860 * 8 6 4 12 12 C 1.39362 * 120.00100 * 180.02562 * 2 1 3 13 13 C 1.39146 * 119.91347 * 0.02562 * 12 2 1 14 14 C 1.37685 * 120.09026 * 180.02562 * 13 12 2 15 15 C 1.39882 * 119.90711 * 359.97438 * 14 13 12 16 16 C 1.47197 * 120.08327 * 180.02562 * 15 14 13 17 17 C 1.34496 * 120.00022 * 179.97438 * 16 15 14 18 18 C 1.47119 * 120.00172 * 185.61566 * 17 16 15 19 19 C 1.40794 * 119.29859 * 5.43562 * 18 17 16 20 20 C 1.36150 * 119.81566 * 180.02562 * 19 18 17 21 21 C 1.41039 * 118.34992 * 359.97438 * 20 19 18 22 22 C 1.40311 * 121.19739 * 180.02562 * 21 20 19 23 23 C 1.36232 * 119.67085 * 179.97438 * 22 21 20 24 24 C 1.39319 * 120.87345 * 359.97438 * 23 22 21 25 25 C 1.36105 * 121.03708 * 0.02562 * 24 23 22 26 26 C 1.40673 * 119.75262 * 359.75888 * 25 24 23 27 27 N 1.32285 * 119.30168 * 185.45172 * 18 17 16 28 28 C 1.46502 * 119.38684 * 359.96247 * 27 18 17 29 29 C 1.39877 * 119.82792 * 0.27222 * 15 14 13 30 30 C 1.37688 * 119.90626 * 359.42697 * 29 15 14 31 31 H 1.09002 * 109.46586 * 269.99599 * 1 2 3 32 32 H 1.08994 * 109.47360 * 30.00078 * 1 2 3 33 33 H 1.08996 * 109.46985 * 150.00065 * 1 2 3 34 34 H 1.09000 * 109.46951 * 30.00141 * 3 2 1 35 35 H 1.08997 * 109.46672 * 150.00287 * 3 2 1 36 36 H 0.97000 * 120.00226 * 180.02562 * 7 6 4 37 37 H 1.08001 * 119.95564 * 359.97438 * 13 12 2 38 38 H 1.07999 * 120.04405 * 180.02562 * 14 13 12 39 39 H 1.08006 * 120.00198 * 359.97438 * 16 15 14 40 40 H 1.07997 * 119.99980 * 5.61726 * 17 16 15 41 41 H 1.08006 * 120.09499 * 359.97438 * 19 18 17 42 42 H 1.07994 * 120.82092 * 179.97438 * 20 19 18 43 43 H 1.08000 * 120.16267 * 359.95884 * 22 21 20 44 44 H 1.07998 * 119.56253 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.47982 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.12642 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.47214 * 85.44654 * 28 27 18 48 48 H 1.08997 * 109.47362 * 325.44410 * 28 27 18 49 49 H 1.09006 * 109.46812 * 205.44386 * 28 27 18 50 50 H 1.07996 * 120.03949 * 179.70364 * 29 15 14 51 51 H 1.07999 * 119.94942 * 180.26700 * 30 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6732 8 14 3.4386 3.4164 -3.4339 9 1 2.3090 4.2597 -3.9010 10 1 4.6992 4.1990 -3.4963 11 1 3.5557 2.2192 -4.3046 12 6 2.1619 -1.2069 -0.0005 13 6 1.4644 -2.4109 -0.0016 14 6 2.1491 -3.6054 -0.0016 15 6 3.5479 -3.6074 -0.0011 16 6 4.2839 -4.8822 -0.0017 17 6 5.6289 -4.8822 -0.0017 18 6 6.3645 -6.1501 -0.1269 19 6 5.6505 -7.3407 -0.3614 20 6 6.3206 -8.5200 -0.4785 21 6 7.7259 -8.5065 -0.3596 22 6 8.4761 -9.6870 -0.4708 23 6 9.8323 -9.6379 -0.3513 24 6 10.4864 -8.4297 -0.1203 25 6 9.7906 -7.2655 -0.0071 26 6 8.3892 -7.2751 -0.1292 27 7 7.6828 -6.1474 -0.0165 28 6 8.3812 -4.8828 0.2271 29 6 4.2454 -2.3950 0.0052 30 6 3.5532 -1.2048 -0.0011 31 1 -0.3632 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6084 2.0284 0.5139 35 1 3.1499 1.1384 0.5138 36 1 4.0309 4.4436 -0.8504 37 1 0.3843 -2.4084 -0.0016 38 1 1.6070 -4.5395 -0.0029 39 1 3.7439 -5.8176 -0.0021 40 1 6.1689 -3.9514 0.0903 41 1 4.5741 -7.3186 -0.4473 42 1 5.7893 -9.4429 -0.6580 43 1 7.9809 -10.6298 -0.6500 44 1 10.4081 -10.5475 -0.4376 45 1 11.5625 -8.4169 -0.0289 46 1 10.3126 -6.3372 0.1724 47 1 8.3987 -4.6777 1.2975 48 1 7.8617 -4.0755 -0.2891 49 1 9.4029 -4.9543 -0.1459 50 1 5.3254 -2.3926 0.0105 51 1 4.0911 -0.2682 -0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004361492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:33 Heat of formation + Delta-G solvation = 203.113998 kcal Electronic energy + Delta-G solvation = -29691.698590 eV Core-core repulsion = 25832.512445 eV Total energy + Delta-G solvation = -3859.186145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.182 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.58663 -40.56976 -39.39329 -37.79941 -36.74170 -35.35572 -34.62360 -32.13791 -32.09814 -31.81929 -30.00294 -29.51893 -29.32001 -27.14617 -25.94711 -25.42290 -24.31865 -23.45795 -23.11500 -22.01210 -20.84873 -19.66429 -19.25693 -18.71234 -18.53940 -18.07470 -17.53096 -17.02531 -16.64883 -16.36977 -16.23723 -16.04192 -15.72380 -15.47655 -15.43842 -15.14340 -14.62877 -14.58928 -14.36083 -14.28859 -14.18095 -13.87415 -13.73202 -13.55361 -13.28678 -13.22933 -13.09874 -12.97457 -12.71490 -12.68411 -12.61764 -12.36556 -12.24667 -12.19183 -12.03735 -11.94508 -11.56081 -11.44845 -10.71315 -10.58788 -9.83919 -9.79192 -9.59134 -8.40865 -7.85715 -6.45166 -1.65587 -0.79108 0.02219 0.45172 0.64843 0.83536 1.24696 1.32609 1.37045 1.44131 1.77398 2.26487 2.48552 2.53590 2.66542 2.92675 3.00314 3.05540 3.10064 3.25632 3.50973 3.71543 3.83920 3.89206 3.97994 4.03984 4.09062 4.12092 4.14831 4.24927 4.28930 4.38035 4.43593 4.48110 4.53854 4.57418 4.59936 4.62365 4.64979 4.76618 4.86408 4.89406 4.95114 4.98683 5.06986 5.09038 5.16447 5.19302 5.24745 5.29030 5.34766 5.50443 5.55106 5.57999 5.61553 5.75696 5.96919 6.04866 6.34694 6.71104 6.77526 7.27336 8.74969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.618 5.618 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.017 3.983 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.234 3.766 13 C -0.234 4.234 14 C -0.020 4.020 15 C -0.187 4.187 16 C 0.070 3.930 17 C -0.249 4.249 18 C 0.285 3.715 19 C -0.176 4.176 20 C 0.036 3.964 21 C -0.108 4.108 22 C -0.066 4.066 23 C -0.125 4.125 24 C -0.054 4.054 25 C -0.157 4.157 26 C 0.126 3.874 27 N -0.369 5.369 28 C 0.000 4.000 29 C -0.035 4.035 30 C -0.232 4.232 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.007 0.993 35 H 0.021 0.979 36 H 0.267 0.733 37 H 0.134 0.866 38 H 0.168 0.832 39 H 0.173 0.827 40 H 0.149 0.851 41 H 0.202 0.798 42 H 0.202 0.798 43 H 0.174 0.826 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.166 0.834 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.129 0.871 50 H 0.145 0.855 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.968 -43.968 3.922 47.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.321 5.321 3 C 0.139 3.861 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.190 1.190 12 C 0.125 3.875 13 C -0.257 4.257 14 C -0.038 4.038 15 C -0.190 4.190 16 C 0.050 3.950 17 C -0.268 4.268 18 C 0.155 3.845 19 C -0.195 4.195 20 C 0.012 3.988 21 C -0.110 4.110 22 C -0.084 4.084 23 C -0.142 4.142 24 C -0.073 4.073 25 C -0.176 4.176 26 C 0.018 3.982 27 N -0.030 5.030 28 C -0.139 4.139 29 C -0.053 4.053 30 C -0.254 4.254 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.025 0.975 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.152 0.848 38 H 0.185 0.815 39 H 0.190 0.810 40 H 0.167 0.833 41 H 0.219 0.781 42 H 0.219 0.781 43 H 0.191 0.809 44 H 0.173 0.827 45 H 0.176 0.824 46 H 0.184 0.816 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.147 0.853 50 H 0.162 0.838 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.168 -43.352 4.025 46.801 hybrid contribution 0.255 1.854 -0.759 2.019 sum 17.423 -41.498 3.265 45.126 Atomic orbital electron populations 1.21732 0.79143 1.03016 1.01454 1.47162 1.06076 1.04367 1.74453 1.18883 0.91410 0.80219 0.95589 1.21708 1.36387 1.06601 0.93227 0.92898 1.25695 0.95253 0.96400 1.00945 1.70005 1.38827 1.14738 1.32702 0.85591 0.77694 0.78425 0.80174 1.20541 1.20745 1.19007 1.18655 0.92171 0.86523 0.90114 1.20899 1.00633 0.90899 1.13225 1.21455 0.93141 0.97761 0.91491 1.18715 0.93386 0.92549 1.14331 1.22600 0.93232 0.97018 0.82177 1.21836 0.95171 0.94424 1.15402 1.20278 0.82367 0.96976 0.84852 1.22025 1.04296 0.89028 1.04109 1.22486 0.91687 1.01147 0.83443 1.18548 0.95124 0.92564 1.04717 1.21552 0.94354 0.97697 0.94798 1.21580 0.95355 0.99692 0.97619 1.21496 1.02588 0.91544 0.91685 1.21322 0.89842 1.02011 1.04425 1.18411 0.93555 0.85666 1.00530 1.42334 1.06300 1.10779 1.43592 1.23576 1.01061 0.81824 1.07396 1.21306 1.00128 0.90665 0.93241 1.20840 0.92906 0.99534 1.12156 0.92429 0.92684 0.89474 0.97463 0.96116 0.92386 0.84828 0.81487 0.80975 0.83342 0.78099 0.78096 0.80857 0.82664 0.82352 0.81634 0.85833 0.85922 0.85302 0.83757 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.18 127.77 1.30 2.70 16 2 N -0.62 -14.16 2.98 -726.41 -2.17 -16.33 16 3 C 0.26 8.71 4.90 85.63 0.42 9.13 16 4 C -0.54 -20.55 9.39 25.60 0.24 -20.31 16 5 H 0.05 2.03 7.81 -2.91 -0.02 2.01 16 6 C 0.02 0.68 5.46 84.66 0.46 1.14 16 7 N -0.92 -39.60 13.29 21.45 0.28 -39.31 16 8 Si 0.96 29.79 29.54 68.60 2.03 31.81 16 9 H -0.28 -8.78 7.11 99.48 0.71 -8.07 16 10 H -0.28 -8.65 7.11 99.48 0.71 -7.95 16 11 H -0.27 -7.79 7.11 99.48 0.71 -7.08 16 12 C 0.23 3.84 6.56 38.38 0.25 4.09 16 13 C -0.23 -1.58 9.18 22.36 0.21 -1.38 16 14 C -0.02 0.06 9.78 22.54 0.22 0.28 16 15 C -0.19 0.96 5.87 -20.13 -0.12 0.84 16 16 C 0.07 -1.22 9.25 23.77 0.22 -1.00 16 17 C -0.25 4.98 8.55 23.75 0.20 5.18 16 18 C 0.28 -6.75 6.60 42.03 0.28 -6.47 16 19 C -0.18 4.85 9.32 22.41 0.21 5.06 16 20 C 0.04 -1.01 9.87 22.47 0.22 -0.79 16 21 C -0.11 2.64 5.75 -21.22 -0.12 2.52 16 22 C -0.07 1.64 9.76 22.31 0.22 1.86 16 23 C -0.12 2.93 9.96 22.06 0.22 3.15 16 24 C -0.05 1.25 9.94 22.03 0.22 1.47 16 25 C -0.16 3.70 9.13 22.37 0.20 3.90 16 26 C 0.13 -2.89 6.47 40.35 0.26 -2.63 16 27 N -0.37 8.83 2.87 -527.61 -1.51 7.32 16 28 C 0.00 0.01 9.45 127.77 1.21 1.22 16 29 C -0.03 -0.08 9.39 22.54 0.21 0.13 16 30 C -0.23 -3.51 9.18 22.36 0.21 -3.31 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 1.05 8.07 -2.39 -0.02 1.03 16 33 H 0.09 0.82 6.17 -2.39 -0.01 0.81 16 34 H 0.01 0.28 8.07 -2.39 -0.02 0.26 16 35 H 0.02 0.75 6.18 -2.39 -0.01 0.74 16 36 H 0.27 10.82 8.31 -92.71 -0.77 10.05 16 37 H 0.13 0.56 6.11 -2.91 -0.02 0.55 16 38 H 0.17 -2.01 8.06 -2.91 -0.02 -2.04 16 39 H 0.17 -4.50 6.09 -2.91 -0.02 -4.51 16 40 H 0.15 -2.93 4.11 -2.91 -0.01 -2.94 16 41 H 0.20 -6.57 6.17 -2.91 -0.02 -6.59 16 42 H 0.20 -6.97 8.06 -2.91 -0.02 -7.00 16 43 H 0.17 -5.15 8.06 -2.91 -0.02 -5.17 16 44 H 0.16 -4.01 8.06 -2.91 -0.02 -4.03 16 45 H 0.16 -4.08 8.06 -2.91 -0.02 -4.11 16 46 H 0.17 -4.53 6.01 -2.91 -0.02 -4.55 16 47 H 0.12 -3.42 8.14 -2.39 -0.02 -3.44 16 48 H 0.12 -3.21 6.12 -2.39 -0.01 -3.22 16 49 H 0.13 -3.74 5.81 -2.38 -0.01 -3.75 16 50 H 0.14 -0.70 6.17 -2.91 -0.02 -0.72 16 51 H 0.10 2.26 6.12 -2.91 -0.02 2.24 16 Total: 0.00 -72.88 407.84 6.33 -66.56 By element: Atomic # 1 Polarization: -57.77 SS G_CDS: 0.96 Total: -56.82 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.74 Total: 6.77 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -3.39 Total: -48.32 kcal Atomic # 14 Polarization: 29.79 SS G_CDS: 2.03 Total: 31.81 kcal Total: -72.88 6.33 -66.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004361492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 269.671 kcal (2) G-P(sol) polarization free energy of solvation -72.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 203.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds