Wall clock time and date at job start Tue Mar 31 2020 05:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99978 * 2 1 4 4 H 1.48498 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47298 * 300.00466 * 3 2 1 6 6 H 1.48504 * 109.47028 * 60.00488 * 3 2 1 7 7 C 1.37878 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99889 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99857 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47334 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99690 * 89.99739 * 10 9 7 12 12 O 1.21289 * 120.00131 * 175.27400 * 11 10 9 13 13 C 1.50701 * 120.00167 * 355.26905 * 11 10 9 14 14 O 1.45197 * 109.47143 * 179.97438 * 13 11 10 15 15 C 1.34875 * 117.00293 * 180.02562 * 14 13 11 16 16 O 1.21580 * 119.99403 * 359.97438 * 15 14 13 17 17 C 1.46551 * 120.00021 * 180.27703 * 15 14 13 18 18 N 1.29759 * 119.55445 * 359.45148 * 17 15 14 19 19 N 1.39863 * 121.13040 * 179.88645 * 18 17 15 20 20 C 1.34750 * 120.33925 * 19.65753 * 19 18 17 21 21 O 1.21247 * 120.11916 * 179.49391 * 20 19 18 22 22 C 1.50770 * 119.76043 * 359.50930 * 20 19 18 23 23 C 1.50549 * 119.54861 * 179.72571 * 17 15 14 24 24 C 1.39924 * 120.00357 * 270.00500 * 10 9 7 25 25 C 1.38872 * 120.07545 * 111.84255 * 24 10 9 26 26 C 1.38113 * 119.93111 * 179.74775 * 25 24 10 27 27 C 1.38284 * 120.06464 * 0.53178 * 26 25 24 28 28 C 1.38278 * 120.14298 * 359.74455 * 27 26 25 29 29 C 1.38104 * 120.07296 * 359.97438 * 28 27 26 30 30 H 0.96999 * 119.99861 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47283 * 60.00138 * 9 7 2 32 32 H 1.08999 * 109.47129 * 299.99666 * 9 7 2 33 33 H 1.09001 * 109.46695 * 60.00230 * 13 11 10 34 34 H 1.08995 * 109.46959 * 299.99918 * 13 11 10 35 35 H 0.97004 * 119.86893 * 199.41809 * 19 18 17 36 36 H 1.09006 * 109.51102 * 206.80358 * 22 20 19 37 37 H 1.09003 * 109.50925 * 86.65626 * 22 20 19 38 38 H 1.09000 * 109.44651 * 265.83919 * 23 17 15 39 39 H 1.08990 * 109.45233 * 25.78383 * 23 17 15 40 40 H 1.08004 * 120.03029 * 0.02981 * 25 24 10 41 41 H 1.07992 * 119.96424 * 180.27644 * 26 25 24 42 42 H 1.08000 * 119.92429 * 179.72659 * 27 26 25 43 43 H 1.08008 * 119.96078 * 180.02562 * 28 27 26 44 44 H 1.08004 * 120.03658 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6417 -4.1254 1.1649 12 8 3.3620 -5.1012 1.1658 13 6 2.2374 -3.4861 2.4684 14 8 2.8338 -4.2178 3.5717 15 6 2.5684 -3.7719 4.8167 16 8 1.8583 -2.7978 4.9749 17 6 3.1415 -4.4576 5.9782 18 7 3.8943 -5.4993 5.7994 19 7 4.4600 -6.1773 6.8841 20 6 3.9455 -6.0319 8.1210 21 8 4.4334 -6.6287 9.0569 22 6 2.7608 -5.1247 8.3369 23 6 2.8436 -3.9475 7.3630 24 6 2.6567 -4.1440 -1.2141 25 6 3.9821 -3.9778 -1.5940 26 6 4.4281 -4.5079 -2.7889 27 6 3.5537 -5.1940 -3.6116 28 6 2.2320 -5.3563 -3.2388 29 6 1.7812 -4.8336 -2.0426 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 1.1517 -3.5086 2.5626 34 1 2.5827 -2.4525 2.4886 35 1 5.2245 -6.7580 6.7453 36 1 2.7700 -4.7514 9.3610 37 1 1.8398 -5.6801 8.1593 38 1 3.6373 -3.2704 7.6788 39 1 1.8930 -3.4145 7.3568 40 1 4.6644 -3.4385 -0.9537 41 1 5.4597 -4.3829 -3.0828 42 1 3.9038 -5.6038 -4.5475 43 1 1.5517 -5.8930 -3.8835 44 1 0.7489 -4.9610 -1.7519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004364373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:46 Heat of formation + Delta-G solvation = -73.939662 kcal Electronic energy + Delta-G solvation = -31177.037109 eV Core-core repulsion = 26675.091736 eV Total energy + Delta-G solvation = -4501.945374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.13970 -40.38835 -39.77165 -38.06821 -37.59984 -36.38465 -35.15034 -33.68799 -32.75499 -31.98418 -30.57141 -30.23876 -28.17047 -27.12634 -26.22111 -24.58798 -23.27868 -22.47139 -22.04958 -21.66855 -19.42855 -19.12178 -18.46646 -17.70256 -17.04313 -16.86081 -16.68095 -16.57317 -16.39446 -16.12888 -15.77804 -15.52928 -14.98842 -14.63294 -14.48675 -14.23540 -14.08739 -13.68688 -13.37165 -13.18108 -13.07293 -12.90155 -12.64088 -12.45269 -12.33062 -12.16709 -12.04318 -11.67677 -11.42133 -11.36445 -11.10934 -10.94685 -10.91996 -10.83363 -10.58665 -10.30056 -10.17008 -9.92804 -9.50023 -9.37793 -8.71080 -8.66440 -8.56318 -7.80362 -6.29703 -4.38332 0.37640 1.65782 1.77575 1.84069 1.95949 2.31589 2.63119 3.02540 3.17092 3.26207 3.29464 3.42326 3.71202 4.02178 4.13857 4.25162 4.29143 4.52972 4.56944 4.85579 4.98759 5.04979 5.20319 5.24143 5.25890 5.28241 5.41680 5.42786 5.59324 5.65126 5.76366 5.91576 5.96123 6.09633 6.23726 6.35454 6.55260 6.74627 6.82442 6.85286 7.01228 7.03630 7.15109 7.41622 7.50048 7.60211 7.64788 7.87181 7.96685 8.60008 8.74538 9.30515 10.77302 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008991 B = 0.002838 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.500710 B = 9864.188410 C =12211.552861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.234 3.766 10 N -0.556 5.556 11 C 0.524 3.476 12 O -0.534 6.534 13 C 0.055 3.945 14 O -0.316 6.316 15 C 0.525 3.475 16 O -0.477 6.477 17 C 0.091 3.909 18 N -0.158 5.158 19 N -0.558 5.558 20 C 0.498 3.502 21 O -0.516 6.516 22 C -0.143 4.143 23 C -0.105 4.105 24 C 0.175 3.825 25 C -0.105 4.105 26 C -0.113 4.113 27 C -0.133 4.133 28 C -0.114 4.114 29 C -0.122 4.122 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.437 0.563 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -8.186 7.341 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.116 3.884 10 N -0.286 5.286 11 C 0.312 3.688 12 O -0.411 6.411 13 C -0.021 4.021 14 O -0.229 6.229 15 C 0.365 3.635 16 O -0.361 6.361 17 C -0.102 4.102 18 N 0.026 4.974 19 N -0.307 5.307 20 C 0.285 3.715 21 O -0.388 6.388 22 C -0.184 4.184 23 C -0.144 4.144 24 C 0.084 3.916 25 C -0.125 4.125 26 C -0.132 4.132 27 C -0.152 4.152 28 C -0.133 4.133 29 C -0.142 4.142 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.124 0.876 34 H 0.140 0.860 35 H 0.283 0.717 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.070 -9.099 7.385 12.405 hybrid contribution 0.265 1.394 0.367 1.466 sum 4.335 -7.705 7.753 11.759 Atomic orbital electron populations 1.69916 1.06026 1.27528 1.48941 1.24922 0.94877 0.99378 0.94316 0.86435 0.80149 0.83048 0.77893 1.19561 1.20730 1.20623 1.21442 0.93720 0.90120 1.53079 0.91773 1.19690 0.87188 0.82158 0.99380 1.45788 1.45684 1.34973 1.02123 1.19829 0.80678 0.83643 0.84697 1.90707 1.37137 1.25876 1.87331 1.22958 0.99901 0.96974 0.82256 1.86659 1.67421 1.55003 1.13807 1.19940 0.78673 0.82011 0.82909 1.90987 1.34195 1.24510 1.86392 1.23748 0.98831 0.93021 0.94594 1.74988 1.05046 1.04130 1.13248 1.47144 1.34009 1.45550 1.03985 1.21405 0.85606 0.82189 0.82330 1.90796 1.60970 1.46942 1.40116 1.21878 0.97393 0.96004 1.03078 1.20954 1.07237 0.98402 0.87852 1.17503 0.92631 0.94676 0.86797 1.21244 0.95454 0.99220 0.96557 1.20947 0.99455 0.98436 0.94377 1.21035 0.93834 1.00582 0.99701 1.20907 0.95843 1.00271 0.96233 1.21201 0.99918 0.97822 0.95210 0.92332 0.93745 0.93960 0.87578 0.86045 0.71742 0.85820 0.86967 0.87512 0.86065 0.86183 0.86227 0.86454 0.86157 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.44 13.29 55.43 0.74 -22.70 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.55 -13.46 9.16 -34.44 -0.32 -13.78 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.23 5.25 4.88 -5.19 -0.03 5.22 16 10 N -0.56 -11.41 2.51 -114.74 -0.29 -11.70 16 11 C 0.52 10.59 7.61 -10.98 -0.08 10.50 16 12 O -0.53 -11.89 16.27 -14.11 -0.23 -12.12 16 13 C 0.06 0.99 4.62 36.01 0.17 1.15 16 14 O -0.32 -5.28 9.54 -47.66 -0.45 -5.73 16 15 C 0.53 7.46 7.91 34.08 0.27 7.73 16 16 O -0.48 -7.48 16.03 -19.33 -0.31 -7.79 16 17 C 0.09 1.01 6.77 -80.19 -0.54 0.46 16 18 N -0.16 -1.86 11.51 34.87 0.40 -1.45 16 19 N -0.56 -5.49 6.61 31.23 0.21 -5.28 16 20 C 0.50 4.93 7.83 -10.96 -0.09 4.84 16 21 O -0.52 -6.69 17.94 5.59 0.10 -6.59 16 22 C -0.14 -0.96 6.20 -27.84 -0.17 -1.14 16 23 C -0.10 -0.78 5.85 -27.95 -0.16 -0.94 16 24 C 0.17 3.41 4.74 -83.69 -0.40 3.02 16 25 C -0.11 -1.93 9.56 -39.39 -0.38 -2.30 16 26 C -0.11 -1.73 10.04 -39.61 -0.40 -2.13 16 27 C -0.13 -1.86 10.04 -39.55 -0.40 -2.25 16 28 C -0.11 -1.66 10.04 -39.62 -0.40 -2.06 16 29 C -0.12 -2.10 9.69 -39.40 -0.38 -2.48 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.04 1.06 7.86 -51.93 -0.41 0.65 16 32 H 0.04 0.95 6.47 -51.93 -0.34 0.61 16 33 H 0.11 1.77 7.25 -51.93 -0.38 1.40 16 34 H 0.12 2.23 7.91 -51.93 -0.41 1.82 16 35 H 0.44 3.63 8.93 -182.77 -1.63 2.00 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.12 0.81 7.54 -51.93 -0.39 0.42 16 40 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 44 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -32.08 391.74 -8.84 -40.92 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.48 Total: 4.13 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -3.40 Total: 7.50 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 1.06 Total: -41.13 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.89 Total: -32.22 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.08 -8.84 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004364373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.024 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds