Wall clock time and date at job start Tue Mar 31 2020 06:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39486 * 120.27166 * 2 1 4 4 C 1.43200 * 120.64728 * 359.97438 * 3 2 1 5 5 N 3.49170 * 81.02027 * 359.97438 * 2 1 3 6 6 C 1.46709 * 118.70335 * 179.70101 * 3 2 1 7 7 N 1.32024 * 131.55796 * 180.32022 * 6 3 2 8 8 C 1.35428 * 109.67490 * 179.97438 * 7 6 3 9 9 C 1.39956 * 133.26599 * 180.02562 * 8 7 6 10 10 C 1.36587 * 119.89252 * 179.97438 * 9 8 7 11 11 C 1.38767 * 120.66969 * 359.97438 * 10 9 8 12 12 C 1.37940 * 120.46326 * 0.06016 * 11 10 9 13 13 C 1.38744 * 119.73019 * 359.92063 * 12 11 10 14 14 N 1.37369 * 118.97934 * 0.27829 * 6 3 2 15 15 C 1.36608 * 120.51296 * 359.97438 * 14 6 3 16 16 N 1.37403 * 119.25669 * 180.02562 * 15 14 6 17 17 C 1.48543 * 110.99543 * 303.66849 * 16 15 14 18 18 C 1.54938 * 103.22489 * 159.72003 * 17 16 15 19 19 C 1.54602 * 102.92228 * 322.58380 * 18 17 16 20 20 C 1.47900 * 111.00033 * 61.05909 * 16 15 14 21 21 C 1.37709 * 121.49597 * 359.97438 * 15 14 6 22 22 C 1.50694 * 119.57320 * 180.02562 * 21 15 14 23 23 C 1.50700 * 109.47412 * 94.98093 * 22 21 15 24 24 H 1.07997 * 120.00083 * 359.97438 * 23 22 21 25 25 C 1.37877 * 120.00075 * 179.97438 * 23 22 21 26 26 N 1.31521 * 120.00056 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99958 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47083 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.46942 * 120.00300 * 27 25 23 30 30 H 1.48507 * 109.46876 * 240.00138 * 27 25 23 31 31 H 1.09006 * 109.47207 * 89.99882 * 1 2 3 32 32 H 1.08997 * 109.47041 * 209.99699 * 1 2 3 33 33 H 1.09001 * 109.47652 * 329.99873 * 1 2 3 34 34 H 1.07995 * 120.05178 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.66292 * 179.97438 * 10 9 8 36 36 H 1.08007 * 119.76811 * 180.02562 * 11 10 9 37 37 H 1.07996 * 120.13950 * 180.02562 * 12 11 10 38 38 H 1.09000 * 110.66336 * 278.15125 * 17 16 15 39 39 H 1.08993 * 110.66701 * 41.28664 * 17 16 15 40 40 H 1.08997 * 110.72476 * 204.22568 * 18 17 16 41 41 H 1.09003 * 110.87823 * 81.01326 * 18 17 16 42 42 H 1.09001 * 110.30622 * 263.04526 * 19 18 17 43 43 H 1.08993 * 110.30788 * 140.87340 * 19 18 17 44 44 H 1.09001 * 109.91938 * 333.51454 * 20 16 15 45 45 H 1.09004 * 109.91593 * 94.80850 * 20 16 15 46 46 H 1.09003 * 109.47117 * 214.98064 * 22 21 15 47 47 H 1.08999 * 109.47420 * 334.97360 * 22 21 15 48 48 H 0.96991 * 119.99716 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.2047 0.0000 4 6 1.5141 2.4561 -0.0006 5 7 0.9620 3.4489 -0.0015 6 6 3.6766 1.1645 0.0067 7 7 4.5791 2.1281 0.0138 8 6 5.8215 1.5891 0.0185 9 6 7.1071 2.1423 0.0269 10 6 8.2004 1.3237 0.0305 11 6 8.0517 -0.0560 0.0266 12 6 6.7946 -0.6238 0.0177 13 6 5.6716 0.1910 0.0143 14 7 4.3091 -0.0549 0.0069 15 6 3.5836 -1.2125 0.0015 16 7 4.2428 -2.4181 0.0024 17 6 5.1780 -2.5142 -1.1476 18 6 6.1667 -3.6234 -0.7087 19 6 6.3313 -3.3603 0.8058 20 6 5.0777 -2.5648 1.2144 21 6 2.2066 -1.1986 -0.0038 22 6 1.4497 -2.5016 -0.0090 23 6 1.0852 -2.8766 1.4043 24 1 1.3733 -2.2357 2.2244 25 6 0.3840 -4.0379 1.6504 26 7 0.0327 -4.8182 0.6516 27 14 -0.0672 -4.5031 3.4024 28 1 0.4408 -3.4663 4.3363 29 1 -1.5440 -4.5992 3.5243 30 1 0.5436 -5.8142 3.7393 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 7.2344 3.2148 0.0312 35 1 9.1907 1.7546 0.0365 36 1 8.9263 -0.6896 0.0300 37 1 6.6849 -1.6982 0.0151 38 1 4.6462 -2.8088 -2.0523 39 1 5.7012 -1.5699 -1.2979 40 1 7.1208 -3.5160 -1.2248 41 1 5.7439 -4.6125 -0.8847 42 1 7.2300 -2.7723 0.9921 43 1 6.3754 -4.3031 1.3509 44 1 5.3668 -1.5822 1.5874 45 1 4.5264 -3.1087 1.9815 46 1 0.5414 -2.3917 -0.6015 47 1 2.0740 -3.2827 -0.4428 48 1 -0.4609 -5.6350 0.8247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004453692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:46 Heat of formation + Delta-G solvation = 178.967669 kcal Electronic energy + Delta-G solvation = -33233.765315 eV Core-core repulsion = 29256.336024 eV Total energy + Delta-G solvation = -3977.429291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.165 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.04236 -39.69153 -38.84332 -36.81242 -36.05461 -34.04539 -33.27746 -32.32613 -30.74775 -29.92221 -29.53870 -29.05366 -27.49070 -26.77476 -24.03756 -23.08152 -22.96161 -22.02171 -21.75875 -21.04094 -20.27678 -18.53898 -17.74654 -17.32422 -16.93575 -16.51235 -16.24200 -15.88256 -15.42461 -14.79126 -14.57650 -14.51049 -14.38663 -13.73433 -13.40706 -13.31784 -13.15026 -12.96768 -12.93725 -12.66231 -12.55565 -12.38755 -12.26812 -12.09864 -12.07987 -11.71051 -11.56826 -11.46213 -11.43199 -11.39347 -11.20866 -11.05941 -10.79265 -10.61846 -10.49553 -10.14043 -9.89426 -9.85357 -9.43233 -8.88699 -8.71816 -8.49595 -8.25642 -7.22714 -6.15314 -4.19052 0.25864 0.82974 1.45062 2.28065 2.31608 2.94953 2.98546 3.21117 3.30808 3.34117 3.64215 3.74742 3.87131 3.91422 4.06253 4.34055 4.42286 4.50561 4.61300 4.71145 4.80787 4.93528 4.98988 5.12455 5.19821 5.24465 5.27238 5.31733 5.34549 5.43524 5.51600 5.66035 5.66620 5.70286 5.71181 5.84886 5.86506 5.90626 5.99209 6.05364 6.15368 6.24799 6.41416 6.42189 6.45581 6.47264 6.60290 6.71866 6.78387 6.87981 7.34965 7.40901 7.62097 7.72383 7.79434 7.87916 8.15197 8.84088 9.44604 10.93767 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.004779 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.056972 B = 5857.874968 C = 8112.349279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 C -0.071 4.071 4 C 0.287 3.713 5 N -0.425 5.425 6 C 0.335 3.665 7 N -0.513 5.513 8 C 0.100 3.900 9 C -0.088 4.088 10 C -0.106 4.106 11 C -0.132 4.132 12 C -0.122 4.122 13 C -0.002 4.002 14 N -0.410 5.410 15 C 0.279 3.721 16 N -0.439 5.439 17 C 0.001 3.999 18 C -0.123 4.123 19 C -0.141 4.141 20 C 0.028 3.972 21 C -0.057 4.057 22 C 0.068 3.932 23 C -0.508 4.508 24 H 0.054 0.946 25 C 0.067 3.933 26 N -0.887 5.887 27 Si 0.888 3.112 28 H -0.273 1.273 29 H -0.283 1.283 30 H -0.284 1.284 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.101 0.899 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.423 2.506 -3.096 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.061 3.939 3 C -0.078 4.078 4 C -0.027 4.027 5 N -0.101 5.101 6 C 0.083 3.917 7 N -0.235 5.235 8 C -0.022 4.022 9 C -0.108 4.108 10 C -0.127 4.127 11 C -0.152 4.152 12 C -0.141 4.141 13 C -0.108 4.108 14 N -0.090 5.090 15 C 0.082 3.918 16 N -0.160 5.160 17 C -0.124 4.124 18 C -0.161 4.161 19 C -0.179 4.179 20 C -0.098 4.098 21 C -0.062 4.062 22 C 0.030 3.970 23 C -0.546 4.546 24 H 0.073 0.927 25 C -0.136 4.136 26 N -0.526 5.526 27 Si 0.716 3.284 28 H -0.198 1.198 29 H -0.209 1.209 30 H -0.210 1.210 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.180 0.820 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.120 0.880 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.030 4.276 -3.149 14.070 hybrid contribution 0.760 -0.830 1.098 1.572 sum 13.789 3.445 -2.051 14.360 Atomic orbital electron populations 1.21157 0.88302 1.05547 1.03806 1.20392 0.97652 0.89404 0.86417 1.15693 0.85382 0.87994 1.18770 1.24612 0.92944 0.91873 0.93297 1.81168 1.09089 1.09704 1.10114 1.21443 0.92300 0.79533 0.98429 1.70889 0.97147 1.27722 1.27738 1.19112 0.92846 0.88923 1.01295 1.20000 0.88503 1.00176 1.02090 1.20671 0.98242 0.93466 1.00281 1.20835 0.95932 0.95051 1.03332 1.21529 0.89805 1.01715 1.01073 1.18778 0.82389 0.96722 1.12932 1.43847 1.05719 1.08161 1.51306 1.19577 0.91610 0.79627 1.00944 1.62133 1.26386 1.24133 1.03362 1.24005 0.93969 0.99632 0.94769 1.22533 0.98770 0.99831 0.94934 1.22637 0.97148 1.01242 0.96841 1.23166 0.93266 1.00256 0.93067 1.20156 0.88553 0.98606 0.98858 1.18311 0.94271 0.86047 0.98337 1.20914 1.35655 1.06669 0.91406 0.92743 1.24883 0.95761 0.96157 0.96753 1.69940 1.38776 1.13331 1.30513 0.86598 0.78287 0.78511 0.85025 1.19788 1.20926 1.20992 0.89430 0.86506 0.91394 0.85299 0.85424 0.85340 0.82032 0.88880 0.91137 0.90385 0.89403 0.90312 0.89718 0.92907 0.88034 0.94444 0.92674 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.83 36.00 0.32 -1.70 16 2 C 0.07 1.20 5.94 -103.96 -0.62 0.59 16 3 C -0.07 -1.25 5.95 -104.09 -0.62 -1.87 16 4 C 0.29 5.08 13.95 -22.47 -0.31 4.77 16 5 N -0.42 -7.86 18.54 41.84 0.78 -7.08 16 6 C 0.33 6.17 7.73 -153.83 -1.19 4.98 16 7 N -0.51 -9.67 11.34 -8.76 -0.10 -9.77 16 8 C 0.10 1.67 7.21 -84.74 -0.61 1.05 16 9 C -0.09 -1.16 10.06 -39.53 -0.40 -1.56 16 10 C -0.11 -1.12 9.96 -39.98 -0.40 -1.52 16 11 C -0.13 -1.37 10.03 -39.50 -0.40 -1.77 16 12 C -0.12 -1.55 6.11 -39.50 -0.24 -1.79 16 13 C 0.00 -0.04 5.07 -83.79 -0.42 -0.46 16 14 N -0.41 -7.08 2.72 -57.69 -0.16 -7.24 16 15 C 0.28 4.89 5.37 -153.35 -0.82 4.06 16 16 N -0.44 -7.03 3.91 -168.96 -0.66 -7.69 16 17 C 0.00 0.02 5.82 -1.89 -0.01 0.01 16 18 C -0.12 -1.25 6.47 -24.87 -0.16 -1.41 16 19 C -0.14 -1.47 6.03 -25.37 -0.15 -1.62 16 20 C 0.03 0.40 5.77 -2.75 -0.02 0.38 16 21 C -0.06 -1.06 5.07 -104.62 -0.53 -1.59 16 22 C 0.07 1.44 4.19 -29.04 -0.12 1.32 16 23 C -0.51 -12.08 8.30 -34.44 -0.29 -12.36 16 24 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 25 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 26 N -0.89 -23.28 13.29 55.43 0.74 -22.55 16 27 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.12 1.99 6.17 -51.93 -0.32 1.67 16 33 H 0.07 0.97 7.13 -51.93 -0.37 0.60 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.16 1.83 0.89 -52.49 -0.05 1.78 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.07 0.95 3.82 -51.93 -0.20 0.75 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.70 6.53 -51.93 -0.34 0.36 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.80 5.32 -51.93 -0.28 0.52 16 45 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.04 0.83 7.00 -51.93 -0.36 0.46 16 47 H 0.06 1.27 7.20 -51.93 -0.37 0.90 16 48 H 0.26 6.60 8.31 -40.82 -0.34 6.27 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -28.77 377.09 -11.47 -40.23 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.63 Total: 2.71 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -7.09 Total: -8.91 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.60 Total: -54.32 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.77 -11.47 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004453692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.201 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds