Wall clock time and date at job start Tue Mar 31 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39486 * 120.27166 * 2 1 4 4 C 1.43200 * 120.64728 * 359.97438 * 3 2 1 5 5 N 3.49170 * 81.02027 * 359.97438 * 2 1 3 6 6 C 1.46709 * 118.70335 * 179.70101 * 3 2 1 7 7 N 1.32024 * 131.55796 * 180.32022 * 6 3 2 8 8 C 1.35428 * 109.67490 * 179.97438 * 7 6 3 9 9 C 1.39956 * 133.26599 * 180.02562 * 8 7 6 10 10 C 1.36587 * 119.89252 * 179.97438 * 9 8 7 11 11 C 1.38767 * 120.66969 * 359.97438 * 10 9 8 12 12 C 1.37940 * 120.46326 * 0.06016 * 11 10 9 13 13 C 1.38744 * 119.73019 * 359.92063 * 12 11 10 14 14 N 1.37369 * 118.97934 * 0.27829 * 6 3 2 15 15 C 1.36608 * 120.51296 * 359.97438 * 14 6 3 16 16 N 1.37403 * 119.25669 * 180.02562 * 15 14 6 17 17 C 1.48543 * 110.99543 * 303.66849 * 16 15 14 18 18 C 1.54938 * 103.22489 * 159.72003 * 17 16 15 19 19 C 1.54602 * 102.92228 * 322.58380 * 18 17 16 20 20 C 1.47900 * 111.00033 * 61.05909 * 16 15 14 21 21 C 1.37709 * 121.49597 * 359.97438 * 15 14 6 22 22 C 1.50694 * 119.57320 * 180.02562 * 21 15 14 23 23 C 1.50700 * 109.47412 * 94.98093 * 22 21 15 24 24 H 1.07997 * 120.00083 * 359.97438 * 23 22 21 25 25 C 1.37877 * 120.00075 * 179.97438 * 23 22 21 26 26 N 1.31521 * 120.00056 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99958 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47083 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.46942 * 120.00300 * 27 25 23 30 30 H 1.48507 * 109.46876 * 240.00138 * 27 25 23 31 31 H 1.09006 * 109.47207 * 89.99882 * 1 2 3 32 32 H 1.08997 * 109.47041 * 209.99699 * 1 2 3 33 33 H 1.09001 * 109.47652 * 329.99873 * 1 2 3 34 34 H 1.07995 * 120.05178 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.66292 * 179.97438 * 10 9 8 36 36 H 1.08007 * 119.76811 * 180.02562 * 11 10 9 37 37 H 1.07996 * 120.13950 * 180.02562 * 12 11 10 38 38 H 1.09000 * 110.66336 * 278.15125 * 17 16 15 39 39 H 1.08993 * 110.66701 * 41.28664 * 17 16 15 40 40 H 1.08997 * 110.72476 * 204.22568 * 18 17 16 41 41 H 1.09003 * 110.87823 * 81.01326 * 18 17 16 42 42 H 1.09001 * 110.30622 * 263.04526 * 19 18 17 43 43 H 1.08993 * 110.30788 * 140.87340 * 19 18 17 44 44 H 1.09001 * 109.91938 * 333.51454 * 20 16 15 45 45 H 1.09004 * 109.91593 * 94.80850 * 20 16 15 46 46 H 1.09003 * 109.47117 * 214.98064 * 22 21 15 47 47 H 1.08999 * 109.47420 * 334.97360 * 22 21 15 48 48 H 0.96991 * 119.99716 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.2047 0.0000 4 6 1.5141 2.4561 -0.0006 5 7 0.9620 3.4489 -0.0015 6 6 3.6766 1.1645 0.0067 7 7 4.5791 2.1281 0.0138 8 6 5.8215 1.5891 0.0185 9 6 7.1071 2.1423 0.0269 10 6 8.2004 1.3237 0.0305 11 6 8.0517 -0.0560 0.0266 12 6 6.7946 -0.6238 0.0177 13 6 5.6716 0.1910 0.0143 14 7 4.3091 -0.0549 0.0069 15 6 3.5836 -1.2125 0.0015 16 7 4.2428 -2.4181 0.0024 17 6 5.1780 -2.5142 -1.1476 18 6 6.1667 -3.6234 -0.7087 19 6 6.3313 -3.3603 0.8058 20 6 5.0777 -2.5648 1.2144 21 6 2.2066 -1.1986 -0.0038 22 6 1.4497 -2.5016 -0.0090 23 6 1.0852 -2.8766 1.4043 24 1 1.3733 -2.2357 2.2244 25 6 0.3840 -4.0379 1.6504 26 7 0.0327 -4.8182 0.6516 27 14 -0.0672 -4.5031 3.4024 28 1 0.4408 -3.4663 4.3363 29 1 -1.5440 -4.5992 3.5243 30 1 0.5436 -5.8142 3.7393 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 7.2344 3.2148 0.0312 35 1 9.1907 1.7546 0.0365 36 1 8.9263 -0.6896 0.0300 37 1 6.6849 -1.6982 0.0151 38 1 4.6462 -2.8088 -2.0523 39 1 5.7012 -1.5699 -1.2979 40 1 7.1208 -3.5160 -1.2248 41 1 5.7439 -4.6125 -0.8847 42 1 7.2300 -2.7723 0.9921 43 1 6.3754 -4.3031 1.3509 44 1 5.3668 -1.5822 1.5874 45 1 4.5264 -3.1087 1.9815 46 1 0.5414 -2.3917 -0.6015 47 1 2.0740 -3.2827 -0.4428 48 1 -0.4609 -5.6350 0.8247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004453692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:45 Heat of formation + Delta-G solvation = 166.541080 kcal Electronic energy + Delta-G solvation = -33234.304172 eV Core-core repulsion = 29256.336024 eV Total energy + Delta-G solvation = -3977.968149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.165 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.25691 -40.83269 -40.03475 -38.04090 -37.39001 -35.29241 -34.97252 -33.60324 -32.09029 -31.07440 -30.73111 -30.07846 -28.68210 -28.35694 -25.45659 -24.51310 -24.06571 -23.18215 -23.03133 -21.98731 -21.46967 -19.82000 -18.98480 -18.45412 -18.36982 -18.04077 -17.43145 -17.16738 -16.63590 -16.42334 -15.72866 -15.55104 -15.51797 -15.06505 -14.70502 -14.45040 -14.42466 -14.30022 -14.14527 -14.09278 -13.84378 -13.76873 -13.56229 -13.24828 -13.16528 -13.02203 -12.91893 -12.69393 -12.56112 -12.55119 -12.42071 -12.35836 -12.30523 -12.11876 -11.71679 -11.60672 -11.43045 -11.04360 -10.98614 -10.47389 -10.03243 -9.87388 -9.44137 -8.50736 -8.06278 -6.15200 -1.04171 -0.31797 0.39324 1.00655 1.10473 1.43124 1.48263 1.55113 1.56925 1.62463 2.42452 2.47156 2.52429 2.61855 2.73783 2.80527 3.26335 3.33179 3.42777 3.56163 3.68921 3.76918 3.97086 4.01751 4.02872 4.11038 4.14857 4.27892 4.34481 4.39082 4.45012 4.53875 4.66687 4.68408 4.75100 4.80191 4.84273 4.87498 4.94802 5.00360 5.04960 5.13415 5.19020 5.31683 5.38145 5.41142 5.49342 5.55297 5.58695 5.60476 5.79602 5.86642 5.90981 6.13621 6.29254 6.31965 6.62698 6.93671 7.50505 9.01245 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.004779 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.056972 B = 5857.874968 C = 8112.349279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.076 3.924 3 C -0.082 4.082 4 C 0.299 3.701 5 N -0.443 5.443 6 C 0.313 3.687 7 N -0.539 5.539 8 C 0.064 3.936 9 C -0.102 4.102 10 C -0.090 4.090 11 C -0.109 4.109 12 C -0.135 4.135 13 C -0.016 4.016 14 N -0.413 5.413 15 C 0.298 3.702 16 N -0.461 5.461 17 C -0.002 4.002 18 C -0.113 4.113 19 C -0.132 4.132 20 C 0.026 3.974 21 C -0.089 4.089 22 C 0.087 3.913 23 C -0.504 4.504 24 H 0.045 0.955 25 C 0.025 3.975 26 N -0.919 5.919 27 Si 0.941 3.059 28 H -0.273 1.273 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.171 0.829 36 H 0.176 0.824 37 H 0.176 0.824 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.025 0.975 47 H 0.034 0.966 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.449 2.033 -2.925 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.067 3.933 3 C -0.089 4.089 4 C -0.015 4.015 5 N -0.120 5.120 6 C 0.060 3.940 7 N -0.261 5.261 8 C -0.056 4.056 9 C -0.122 4.122 10 C -0.109 4.109 11 C -0.129 4.129 12 C -0.154 4.154 13 C -0.121 4.121 14 N -0.094 5.094 15 C 0.101 3.899 16 N -0.184 5.184 17 C -0.127 4.127 18 C -0.151 4.151 19 C -0.170 4.170 20 C -0.100 4.100 21 C -0.094 4.094 22 C 0.049 3.951 23 C -0.542 4.542 24 H 0.063 0.937 25 C -0.175 4.175 26 N -0.559 5.559 27 Si 0.768 3.232 28 H -0.198 1.198 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.156 0.844 35 H 0.188 0.812 36 H 0.193 0.807 37 H 0.192 0.808 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.043 0.957 47 H 0.052 0.948 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.092 3.819 -2.973 17.764 hybrid contribution -0.212 -0.647 1.025 1.231 sum 16.880 3.173 -1.948 17.285 Atomic orbital electron populations 1.21123 0.87333 1.04911 1.04840 1.20402 0.98247 0.88881 0.85793 1.15608 0.85404 0.87786 1.20107 1.24607 0.92462 0.91714 0.92690 1.81156 1.09690 1.10050 1.11074 1.21561 0.92577 0.80186 0.99640 1.70806 0.98468 1.28585 1.28287 1.19637 0.93238 0.89691 1.03008 1.20366 0.87952 1.01370 1.02532 1.21205 0.99127 0.93438 0.97165 1.21464 0.96293 0.95632 0.99473 1.21862 0.89641 1.02249 1.01631 1.19252 0.82308 0.97106 1.13407 1.43890 1.06529 1.07504 1.51491 1.19649 0.91613 0.80495 0.98183 1.62201 1.27892 1.23175 1.05090 1.24130 0.94084 1.00903 0.93559 1.22571 0.99421 0.98280 0.94812 1.22656 0.95776 1.01524 0.96994 1.23195 0.94609 1.00120 0.92031 1.19843 0.89261 0.97815 1.02453 1.17901 0.93570 0.86923 0.96662 1.21099 1.34593 1.06114 0.92405 0.93683 1.25476 0.96054 0.96368 0.99552 1.70031 1.39968 1.13832 1.32036 0.85771 0.77890 0.78022 0.81559 1.19772 1.20790 1.20834 0.87561 0.88428 0.90453 0.84385 0.81183 0.80704 0.80791 0.89589 0.91044 0.86727 0.89758 0.87668 0.88502 0.93848 0.90339 0.95671 0.94765 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 8.83 71.23 0.63 -3.41 16 2 C 0.08 2.72 5.94 -19.43 -0.12 2.61 16 3 C -0.08 -2.99 5.95 -19.52 -0.12 -3.11 16 4 C 0.30 10.98 13.95 88.33 1.23 12.21 16 5 N -0.44 -16.81 18.54 19.00 0.35 -16.46 16 6 C 0.31 11.98 7.73 135.72 1.05 13.03 16 7 N -0.54 -20.85 11.34 -181.62 -2.06 -22.91 16 8 C 0.06 2.10 7.21 39.59 0.29 2.39 16 9 C -0.10 -2.47 10.06 22.30 0.22 -2.24 16 10 C -0.09 -1.44 9.96 22.01 0.22 -1.22 16 11 C -0.11 -1.66 10.03 22.33 0.22 -1.44 16 12 C -0.14 -2.96 6.11 22.32 0.14 -2.83 16 13 C -0.02 -0.50 5.07 38.80 0.20 -0.31 16 14 N -0.41 -14.58 2.72 -336.42 -0.92 -15.50 16 15 C 0.30 10.80 5.37 131.95 0.71 11.51 16 16 N -0.46 -14.94 3.91 -688.47 -2.69 -17.63 16 17 C 0.00 -0.05 5.82 86.65 0.50 0.45 16 18 C -0.11 -1.94 6.47 31.80 0.21 -1.73 16 19 C -0.13 -2.34 6.03 31.48 0.19 -2.15 16 20 C 0.03 0.72 5.77 86.45 0.50 1.22 16 21 C -0.09 -3.47 5.07 -19.86 -0.10 -3.57 16 22 C 0.09 3.91 4.19 29.10 0.12 4.03 16 23 C -0.50 -24.84 8.30 25.60 0.21 -24.63 16 24 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 25 C 0.02 1.25 5.46 84.65 0.46 1.71 16 26 N -0.92 -49.47 13.29 21.45 0.28 -49.18 16 27 Si 0.94 40.96 29.54 68.60 2.03 42.98 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 30 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 31 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 32 H 0.10 3.52 6.17 -2.39 -0.01 3.51 16 33 H 0.08 2.29 7.13 -2.39 -0.02 2.27 16 34 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 35 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.18 3.31 0.89 -2.91 0.00 3.30 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.07 1.80 3.82 -2.39 -0.01 1.79 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 42 H 0.11 1.33 6.53 -2.39 -0.02 1.32 16 43 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.04 1.29 5.32 -2.39 -0.01 1.28 16 45 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 46 H 0.03 1.18 7.00 -2.39 -0.02 1.16 16 47 H 0.03 1.66 7.20 -2.39 -0.02 1.65 16 48 H 0.26 13.49 8.31 -92.72 -0.77 12.72 16 Total: -1.00 -66.43 377.09 4.80 -61.63 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.04 Total: 14.52 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.77 Total: 2.54 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -5.03 Total: -121.67 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -66.43 4.80 -61.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004453692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.175 kcal (2) G-P(sol) polarization free energy of solvation -66.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds