Wall clock time and date at job start Tue Mar 31 2020 05:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47446 * 270.00425 * 3 2 1 5 5 H 1.48505 * 109.46829 * 30.00542 * 3 2 1 6 6 H 1.48501 * 109.47199 * 149.99840 * 3 2 1 7 7 C 1.37879 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00067 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.34151 * 125.15719 * 125.29363 * 10 9 7 12 12 C 1.37974 * 107.88800 * 180.13441 * 11 10 9 13 13 C 1.47280 * 126.80866 * 179.87122 * 12 11 10 14 14 O 1.21623 * 119.99770 * 127.68422 * 13 12 11 15 15 N 1.34770 * 119.99941 * 307.40690 * 13 12 11 16 16 C 1.47157 * 120.98394 * 4.11017 * 15 13 12 17 17 C 1.53706 * 108.16108 * 129.43242 * 16 15 13 18 18 O 1.42966 * 109.15233 * 52.53861 * 17 16 15 19 19 C 1.42960 * 114.16514 * 297.29164 * 18 17 16 20 20 C 1.47149 * 120.98086 * 184.39076 * 15 13 12 21 21 C 1.46606 * 106.37790 * 359.60579 * 12 11 10 22 22 C 1.48281 * 126.51121 * 180.26111 * 21 12 11 23 23 C 1.39400 * 120.09919 * 324.73030 * 22 21 12 24 24 C 1.37963 * 119.89264 * 179.74317 * 23 22 21 25 25 C 1.38551 * 120.10130 * 0.50862 * 24 23 22 26 26 F 1.35101 * 119.89523 * 179.74668 * 25 24 23 27 27 C 1.38552 * 120.20302 * 359.76095 * 25 24 23 28 28 C 1.37962 * 120.09930 * 359.97438 * 27 25 24 29 29 N 1.31366 * 106.97095 * 0.24324 * 21 12 11 30 30 H 0.96991 * 119.99831 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46652 * 60.00611 * 9 7 2 32 32 H 1.08996 * 109.47533 * 300.00780 * 9 7 2 33 33 H 1.08004 * 126.05856 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.67923 * 249.21255 * 16 15 13 35 35 H 1.08992 * 109.67762 * 9.76215 * 16 15 13 36 36 H 1.08995 * 109.65869 * 292.57187 * 17 16 15 37 37 H 1.09001 * 109.48476 * 172.39501 * 17 16 15 38 38 H 1.09006 * 109.51055 * 302.65386 * 19 18 17 39 39 H 1.09001 * 109.55962 * 182.52768 * 19 18 17 40 40 H 1.09000 * 109.68434 * 350.23868 * 20 15 13 41 41 H 1.09000 * 109.68292 * 110.75256 * 20 15 13 42 42 H 1.08002 * 120.04757 * 359.97438 * 23 22 21 43 43 H 1.08004 * 119.94228 * 180.25283 * 24 23 22 44 44 H 1.08004 * 119.95004 * 179.97438 * 27 25 24 45 45 H 1.08004 * 120.04700 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.2241 -4.6120 0.8930 12 6 3.2618 -5.4579 0.5593 13 6 3.6603 -6.6872 1.2658 14 8 3.7829 -7.7294 0.6510 15 7 3.8945 -6.6559 2.5927 16 6 3.6723 -5.4279 3.3724 17 6 2.8072 -5.7846 4.5918 18 8 3.4078 -6.8788 5.2890 19 6 3.4911 -8.0844 4.5253 20 6 4.3858 -7.8471 3.3034 21 6 3.8850 -4.8938 -0.6419 22 6 5.0420 -5.4535 -1.3813 23 6 6.0697 -6.0937 -0.6905 24 6 7.1417 -6.6176 -1.3832 25 6 7.2028 -6.4990 -2.7623 26 9 8.2569 -7.0091 -3.4359 27 6 6.1864 -5.8586 -3.4525 28 6 5.1079 -5.3364 -2.7687 29 7 3.2233 -3.7985 -0.9388 30 1 -0.4849 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6247 -2.5571 0.8896 33 1 1.5495 -4.7322 1.7278 34 1 4.6295 -5.0248 3.7031 35 1 3.1559 -4.6910 2.7574 36 1 1.8076 -6.0678 4.2621 37 1 2.7411 -4.9225 5.2555 38 1 2.4939 -8.3759 4.1952 39 1 3.9172 -8.8772 5.1402 40 1 4.3421 -8.7129 2.6426 41 1 5.4138 -7.6837 3.6267 42 1 6.0250 -6.1827 0.3849 43 1 7.9364 -7.1174 -0.8492 44 1 6.2384 -5.7680 -4.5275 45 1 4.3158 -4.8377 -3.3076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004516903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:13 Heat of formation + Delta-G solvation = -17.005860 kcal Electronic energy + Delta-G solvation = -31910.146697 eV Core-core repulsion = 27423.042948 eV Total energy + Delta-G solvation = -4487.103750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.87601 -40.96862 -39.79407 -38.66950 -38.03480 -34.73477 -33.95782 -32.37008 -31.88511 -31.15701 -30.23513 -29.74560 -28.02183 -26.93092 -24.34304 -23.83428 -23.38048 -22.93226 -22.02859 -20.95579 -19.93735 -19.10248 -17.63623 -17.36143 -16.72595 -16.67872 -16.38366 -16.10550 -15.81833 -15.56300 -15.38630 -15.32149 -15.13317 -14.71221 -14.46896 -14.32993 -13.97092 -13.71571 -13.59009 -13.39672 -13.14723 -12.78452 -12.66796 -12.42527 -12.33584 -11.93691 -11.88996 -11.72369 -11.59661 -11.17818 -11.02148 -10.99983 -10.89157 -10.46436 -10.42478 -10.30445 -9.95130 -9.70907 -9.25079 -9.07392 -8.78512 -8.65307 -8.38377 -7.85174 -6.41019 -4.47451 0.97418 1.30640 2.05602 2.61507 2.78727 3.11560 3.14718 3.21523 3.22147 3.27226 3.61569 3.82204 4.17861 4.26932 4.48029 4.56217 4.72532 4.75790 4.82406 4.87853 4.90963 4.95936 5.01875 5.07308 5.22800 5.30301 5.33803 5.34891 5.42184 5.57157 5.59140 5.64387 5.77885 5.81736 5.96220 5.99597 6.13401 6.17860 6.37321 6.46398 6.59552 6.76347 6.86369 6.87567 6.95000 7.34641 7.43037 7.63743 7.64914 8.18344 8.29804 8.59856 9.19785 10.67947 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.006068 B = 0.004163 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4612.967763 B = 6724.760517 C =10486.500708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.250 3.750 10 N -0.307 5.307 11 C 0.089 3.911 12 C -0.303 4.303 13 C 0.607 3.393 14 O -0.536 6.536 15 N -0.617 5.617 16 C 0.066 3.934 17 C 0.047 3.953 18 O -0.381 6.381 19 C 0.048 3.952 20 C 0.079 3.921 21 C 0.124 3.876 22 C -0.004 4.004 23 C -0.057 4.057 24 C -0.153 4.153 25 C 0.096 3.904 26 F -0.143 7.143 27 C -0.154 4.154 28 C -0.062 4.062 29 N -0.252 5.252 30 H 0.269 0.731 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.176 0.824 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 -13.203 5.888 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.133 3.867 10 N -0.084 5.084 11 C -0.064 4.064 12 C -0.320 4.320 13 C 0.397 3.603 14 O -0.413 6.413 15 N -0.353 5.353 16 C -0.057 4.057 17 C -0.031 4.031 18 O -0.299 6.299 19 C -0.030 4.030 20 C -0.044 4.044 21 C -0.042 4.042 22 C -0.006 4.006 23 C -0.076 4.076 24 C -0.172 4.172 25 C 0.076 3.924 26 F -0.122 7.122 27 C -0.173 4.173 28 C -0.082 4.082 29 N -0.073 5.073 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.603 -12.479 4.903 15.413 hybrid contribution 0.322 0.298 0.313 0.539 sum 7.925 -12.181 5.216 15.440 Atomic orbital electron populations 1.69905 1.06083 1.27948 1.49042 1.24925 0.94978 0.99620 0.94237 0.86309 0.79650 0.81914 0.78579 1.20190 1.20889 1.19602 1.21169 0.94003 0.89003 1.53071 0.91090 1.19962 0.85648 0.81206 0.99848 1.49229 1.22951 1.18752 1.17476 1.22772 0.98729 0.88996 0.95859 1.20780 1.05979 1.02096 1.03104 1.17366 0.75436 0.87262 0.80268 1.90756 1.52479 1.31921 1.66126 1.48042 1.67394 1.12268 1.07586 1.22694 1.01633 0.87680 0.93694 1.23099 0.95446 0.90456 0.94057 1.87955 1.81954 1.20101 1.39921 1.22980 0.99528 0.87558 0.92892 1.22243 0.98010 0.89805 0.94363 1.21474 0.96004 0.93366 0.93376 1.17741 0.91950 0.98524 0.92354 1.20868 0.91803 0.95051 0.99915 1.20938 1.00420 1.03496 0.92306 1.17755 0.85709 0.98661 0.90247 1.91477 1.55123 1.85131 1.80470 1.21026 0.94213 1.01200 1.00863 1.21113 0.97397 0.96728 0.92926 1.77431 1.00713 1.16210 1.12988 0.92104 0.93090 0.92274 0.80653 0.90495 0.87606 0.92464 0.87408 0.92613 0.87804 0.88043 0.90827 0.85559 0.84716 0.84524 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 13.29 55.43 0.74 -22.85 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 20.11 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.53 -13.54 9.21 -34.44 -0.32 -13.86 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 5.65 6.21 -5.19 -0.03 5.62 16 10 N -0.31 -6.19 3.62 -62.03 -0.22 -6.42 16 11 C 0.09 1.47 9.14 -16.64 -0.15 1.32 16 12 C -0.30 -5.15 5.36 -102.94 -0.55 -5.70 16 13 C 0.61 9.52 5.90 -12.59 -0.07 9.44 16 14 O -0.54 -9.76 16.20 5.26 0.09 -9.67 16 15 N -0.62 -7.72 3.01 -173.35 -0.52 -8.24 16 16 C 0.07 0.72 6.49 -3.32 -0.02 0.70 16 17 C 0.05 0.44 7.00 37.52 0.26 0.71 16 18 O -0.38 -4.02 10.74 -35.23 -0.38 -4.39 16 19 C 0.05 0.43 6.98 37.31 0.26 0.69 16 20 C 0.08 0.81 6.65 -3.53 -0.02 0.78 16 21 C 0.12 2.30 6.94 -80.56 -0.56 1.74 16 22 C 0.00 -0.06 5.84 -104.91 -0.61 -0.67 16 23 C -0.06 -0.84 8.85 -39.25 -0.35 -1.18 16 24 C -0.15 -2.00 10.01 -39.57 -0.40 -2.40 16 25 C 0.10 1.29 7.30 -39.35 -0.29 1.00 16 26 F -0.14 -1.89 17.26 2.25 0.04 -1.85 16 27 C -0.15 -2.03 10.01 -39.57 -0.40 -2.42 16 28 C -0.06 -0.93 9.76 -39.25 -0.38 -1.32 16 29 N -0.25 -5.25 12.27 34.57 0.42 -4.83 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 33 H 0.18 2.25 7.52 -52.48 -0.39 1.85 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.11 1.25 4.20 -51.93 -0.22 1.03 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 1.10 7.06 -51.93 -0.37 0.74 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.13 1.82 6.87 -52.49 -0.36 1.46 16 43 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 44 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 45 H 0.14 2.03 8.06 -52.48 -0.42 1.60 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -30.26 385.35 -8.31 -38.57 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.53 Total: 2.75 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -3.73 Total: -3.96 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.41 Total: -42.33 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.29 Total: -14.07 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.26 -8.31 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.565 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds