Wall clock time and date at job start Tue Mar 31 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47446 * 270.00425 * 3 2 1 5 5 H 1.48505 * 109.46829 * 30.00542 * 3 2 1 6 6 H 1.48501 * 109.47199 * 149.99840 * 3 2 1 7 7 C 1.37879 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00067 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.34151 * 125.15719 * 125.29363 * 10 9 7 12 12 C 1.37974 * 107.88800 * 180.13441 * 11 10 9 13 13 C 1.47280 * 126.80866 * 179.87122 * 12 11 10 14 14 O 1.21623 * 119.99770 * 127.68422 * 13 12 11 15 15 N 1.34770 * 119.99941 * 307.40690 * 13 12 11 16 16 C 1.47157 * 120.98394 * 4.11017 * 15 13 12 17 17 C 1.53706 * 108.16108 * 129.43242 * 16 15 13 18 18 O 1.42966 * 109.15233 * 52.53861 * 17 16 15 19 19 C 1.42960 * 114.16514 * 297.29164 * 18 17 16 20 20 C 1.47149 * 120.98086 * 184.39076 * 15 13 12 21 21 C 1.46606 * 106.37790 * 359.60579 * 12 11 10 22 22 C 1.48281 * 126.51121 * 180.26111 * 21 12 11 23 23 C 1.39400 * 120.09919 * 324.73030 * 22 21 12 24 24 C 1.37963 * 119.89264 * 179.74317 * 23 22 21 25 25 C 1.38551 * 120.10130 * 0.50862 * 24 23 22 26 26 F 1.35101 * 119.89523 * 179.74668 * 25 24 23 27 27 C 1.38552 * 120.20302 * 359.76095 * 25 24 23 28 28 C 1.37962 * 120.09930 * 359.97438 * 27 25 24 29 29 N 1.31366 * 106.97095 * 0.24324 * 21 12 11 30 30 H 0.96991 * 119.99831 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46652 * 60.00611 * 9 7 2 32 32 H 1.08996 * 109.47533 * 300.00780 * 9 7 2 33 33 H 1.08004 * 126.05856 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.67923 * 249.21255 * 16 15 13 35 35 H 1.08992 * 109.67762 * 9.76215 * 16 15 13 36 36 H 1.08995 * 109.65869 * 292.57187 * 17 16 15 37 37 H 1.09001 * 109.48476 * 172.39501 * 17 16 15 38 38 H 1.09006 * 109.51055 * 302.65386 * 19 18 17 39 39 H 1.09001 * 109.55962 * 182.52768 * 19 18 17 40 40 H 1.09000 * 109.68434 * 350.23868 * 20 15 13 41 41 H 1.09000 * 109.68292 * 110.75256 * 20 15 13 42 42 H 1.08002 * 120.04757 * 359.97438 * 23 22 21 43 43 H 1.08004 * 119.94228 * 180.25283 * 24 23 22 44 44 H 1.08004 * 119.95004 * 179.97438 * 27 25 24 45 45 H 1.08004 * 120.04700 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.2241 -4.6120 0.8930 12 6 3.2618 -5.4579 0.5593 13 6 3.6603 -6.6872 1.2658 14 8 3.7829 -7.7294 0.6510 15 7 3.8945 -6.6559 2.5927 16 6 3.6723 -5.4279 3.3724 17 6 2.8072 -5.7846 4.5918 18 8 3.4078 -6.8788 5.2890 19 6 3.4911 -8.0844 4.5253 20 6 4.3858 -7.8471 3.3034 21 6 3.8850 -4.8938 -0.6419 22 6 5.0420 -5.4535 -1.3813 23 6 6.0697 -6.0937 -0.6905 24 6 7.1417 -6.6176 -1.3832 25 6 7.2028 -6.4990 -2.7623 26 9 8.2569 -7.0091 -3.4359 27 6 6.1864 -5.8586 -3.4525 28 6 5.1079 -5.3364 -2.7687 29 7 3.2233 -3.7985 -0.9388 30 1 -0.4849 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6247 -2.5571 0.8896 33 1 1.5495 -4.7322 1.7278 34 1 4.6295 -5.0248 3.7031 35 1 3.1559 -4.6910 2.7574 36 1 1.8076 -6.0678 4.2621 37 1 2.7411 -4.9225 5.2555 38 1 2.4939 -8.3759 4.1952 39 1 3.9172 -8.8772 5.1402 40 1 4.3421 -8.7129 2.6426 41 1 5.4138 -7.6837 3.6267 42 1 6.0250 -6.1827 0.3849 43 1 7.9364 -7.1174 -0.8492 44 1 6.2384 -5.7680 -4.5275 45 1 4.3158 -4.8377 -3.3076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004516903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:11 Heat of formation + Delta-G solvation = -34.219375 kcal Electronic energy + Delta-G solvation = -31910.893131 eV Core-core repulsion = 27423.042948 eV Total energy + Delta-G solvation = -4487.850184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.94241 -42.29743 -40.85885 -39.82338 -39.07668 -35.76810 -35.71518 -33.96044 -32.80827 -32.24495 -31.57181 -31.03387 -29.19858 -28.36480 -25.47540 -25.20070 -24.50835 -24.05604 -23.24510 -22.15864 -21.19381 -20.27967 -18.79655 -18.73549 -18.33386 -17.85690 -17.37960 -17.20793 -16.90118 -16.71251 -16.62597 -16.33814 -16.19932 -15.84960 -15.79181 -15.61488 -15.20979 -14.92081 -14.70262 -14.55502 -14.35909 -14.19224 -13.95392 -13.80548 -13.43499 -13.30091 -13.02488 -12.96402 -12.78731 -12.72525 -12.34132 -12.30598 -12.15650 -11.89583 -11.69701 -11.65841 -11.19290 -10.96574 -10.79358 -10.63695 -10.16650 -9.78486 -9.56628 -9.21515 -8.35739 -6.48405 -0.20441 0.20912 0.73280 1.26572 1.38461 1.41101 1.48984 1.57191 1.78880 2.05070 2.34028 2.63774 2.89864 2.98433 3.16726 3.26096 3.55734 3.70801 3.76263 3.80986 3.87252 4.02487 4.12395 4.14764 4.18874 4.24025 4.32372 4.39607 4.47291 4.57123 4.69238 4.77120 4.79984 4.85698 4.87745 4.88538 4.93870 4.96461 5.03772 5.06174 5.38404 5.41212 5.47902 5.56171 5.77827 5.80325 6.01128 6.12900 6.25179 6.58960 6.75388 7.11206 7.21966 8.72601 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.006068 B = 0.004163 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4612.967763 B = 6724.760517 C =10486.500708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.965 3.035 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.265 3.735 10 N -0.329 5.329 11 C 0.101 3.899 12 C -0.307 4.307 13 C 0.610 3.390 14 O -0.566 6.566 15 N -0.610 5.610 16 C 0.065 3.935 17 C 0.050 3.950 18 O -0.391 6.391 19 C 0.051 3.949 20 C 0.076 3.924 21 C 0.125 3.875 22 C -0.032 4.032 23 C -0.059 4.059 24 C -0.146 4.146 25 C 0.097 3.903 26 F -0.139 7.139 27 C -0.147 4.147 28 C -0.072 4.072 29 N -0.296 5.296 30 H 0.273 0.727 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.211 0.789 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.054 0.946 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 -13.992 7.234 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.073 0.927 9 C 0.147 3.853 10 N -0.106 5.106 11 C -0.050 4.050 12 C -0.323 4.323 13 C 0.400 3.600 14 O -0.445 6.445 15 N -0.344 5.344 16 C -0.058 4.058 17 C -0.028 4.028 18 O -0.310 6.310 19 C -0.026 4.026 20 C -0.046 4.046 21 C -0.042 4.042 22 C -0.034 4.034 23 C -0.079 4.079 24 C -0.165 4.165 25 C 0.077 3.923 26 F -0.118 7.118 27 C -0.166 4.166 28 C -0.092 4.092 29 N -0.117 5.117 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.180 0.820 44 H 0.180 0.820 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.913 -13.277 6.289 17.183 hybrid contribution 0.013 0.428 -0.108 0.441 sum 8.925 -12.849 6.181 16.822 Atomic orbital electron populations 1.69972 1.07105 1.28795 1.49739 1.25615 0.95695 1.02389 0.93865 0.85442 0.78593 0.78610 0.78388 1.20320 1.19817 1.19501 1.21317 0.93412 0.90603 1.53025 0.92699 1.19543 0.85643 0.81261 0.98882 1.48935 1.23369 1.19434 1.18822 1.23327 0.98634 0.87448 0.95563 1.21014 1.05829 1.02580 1.02910 1.17143 0.75496 0.86199 0.81198 1.90737 1.54143 1.32582 1.67078 1.48073 1.66051 1.13592 1.06672 1.22804 1.02278 0.86814 0.93908 1.23165 0.95073 0.90989 0.93541 1.87952 1.82018 1.20617 1.40380 1.23082 0.99324 0.87717 0.92493 1.22441 0.99070 0.88544 0.94533 1.21936 0.95953 0.92600 0.93687 1.17943 0.92256 1.00054 0.93121 1.20890 0.91903 0.95101 1.00018 1.21186 1.00334 1.02591 0.92379 1.17843 0.85696 0.98312 0.90461 1.91493 1.54870 1.85000 1.80391 1.21236 0.93224 1.00029 1.02103 1.21147 0.98122 0.97310 0.92576 1.77358 1.02007 1.17953 1.14431 0.91820 0.95667 0.91402 0.77208 0.89917 0.88616 0.91989 0.85620 0.92749 0.85173 0.88685 0.89505 0.85503 0.82025 0.82029 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.90 13.29 21.45 0.28 -48.62 16 2 C 0.03 1.31 5.46 84.65 0.46 1.78 16 3 Si 0.96 41.31 29.54 68.60 2.03 43.34 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -28.28 9.21 25.60 0.24 -28.04 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.26 12.32 6.21 85.63 0.53 12.85 16 10 N -0.33 -13.61 3.62 -350.17 -1.27 -14.88 16 11 C 0.10 3.35 9.14 84.28 0.77 4.13 16 12 C -0.31 -10.48 5.36 -18.78 -0.10 -10.58 16 13 C 0.61 18.83 5.90 86.62 0.51 19.34 16 14 O -0.57 -20.47 16.20 -4.10 -0.07 -20.53 16 15 N -0.61 -14.41 3.01 -820.60 -2.47 -16.88 16 16 C 0.06 1.31 6.49 86.49 0.56 1.87 16 17 C 0.05 0.82 7.00 72.22 0.51 1.32 16 18 O -0.39 -7.20 10.74 -148.98 -1.60 -8.80 16 19 C 0.05 0.78 6.98 72.08 0.50 1.28 16 20 C 0.08 1.42 6.65 86.36 0.57 1.99 16 21 C 0.12 4.75 6.94 44.07 0.31 5.06 16 22 C -0.03 -1.06 5.84 -20.05 -0.12 -1.17 16 23 C -0.06 -1.72 8.85 22.48 0.20 -1.52 16 24 C -0.15 -3.59 10.01 22.28 0.22 -3.36 16 25 C 0.10 2.41 7.30 22.42 0.16 2.58 16 26 F -0.14 -3.34 17.26 44.97 0.78 -2.57 16 27 C -0.15 -3.70 10.01 22.28 0.22 -3.47 16 28 C -0.07 -2.18 9.76 22.48 0.22 -1.96 16 29 N -0.30 -12.85 12.27 -44.53 -0.55 -13.39 16 30 H 0.27 13.70 8.31 -92.72 -0.77 12.93 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 3.00 8.05 -2.39 -0.02 2.98 16 33 H 0.21 5.13 7.52 -2.91 -0.02 5.11 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 2.15 4.20 -2.39 -0.01 2.14 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.94 7.06 -2.39 -0.02 1.92 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.13 3.59 6.87 -2.91 -0.02 3.57 16 43 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 44 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 45 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -65.84 385.35 3.94 -61.90 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 1.03 Total: 18.37 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.77 Total: 2.07 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -4.00 Total: -93.77 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.67 Total: -29.33 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -65.84 3.94 -61.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.679 kcal (2) G-P(sol) polarization free energy of solvation -65.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds