Wall clock time and date at job start Tue Mar 31 2020 07:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48500 * 109.47125 * 239.99898 * 3 2 1 5 5 H 1.48509 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47398 * 119.99359 * 3 2 1 7 7 C 1.39866 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00111 * 195.23106 * 7 2 1 9 9 C 1.41141 * 119.99602 * 15.22670 * 7 2 1 10 10 C 1.40889 * 120.15264 * 205.12625 * 9 7 2 11 11 C 1.36336 * 119.83563 * 180.02562 * 10 9 7 12 12 C 1.39565 * 120.16296 * 359.97438 * 11 10 9 13 13 N 1.38852 * 119.84162 * 179.97438 * 12 11 10 14 14 S 1.65602 * 120.00467 * 74.07109 * 13 12 11 15 15 O 1.42101 * 106.39870 * 309.32011 * 14 13 12 16 16 O 1.42100 * 106.40223 * 176.40030 * 14 13 12 17 17 C 1.76195 * 107.21860 * 62.85837 * 14 13 12 18 18 C 1.38254 * 119.94528 * 84.47387 * 17 14 13 19 19 C 1.38190 * 120.11554 * 180.09525 * 18 17 14 20 20 C 1.38708 * 120.06583 * 0.28736 * 19 18 17 21 21 C 1.38977 * 119.81938 * 359.34010 * 20 19 18 22 22 C 1.38204 * 119.94307 * 264.50060 * 17 14 13 23 23 O 1.36102 * 120.78205 * 180.55102 * 21 20 19 24 24 C 1.43178 * 116.71525 * 342.97629 * 23 21 20 25 25 C 1.53460 * 108.25738 * 46.17715 * 24 23 21 26 26 O 1.36105 * 119.39304 * 179.90750 * 20 19 18 27 27 C 1.39567 * 120.31157 * 0.26120 * 12 11 10 28 28 C 1.36336 * 120.16411 * 359.47794 * 27 12 11 29 29 H 0.97000 * 119.99694 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.08046 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.91678 * 179.97438 * 11 10 9 32 32 H 0.97009 * 120.00154 * 254.06839 * 13 12 11 33 33 H 1.08000 * 119.93978 * 0.08257 * 18 17 14 34 34 H 1.08000 * 119.97053 * 180.02562 * 19 18 17 35 35 H 1.07999 * 119.96415 * 359.94829 * 22 17 14 36 36 H 1.08995 * 109.70603 * 165.87127 * 24 23 21 37 37 H 1.09005 * 109.70266 * 286.48606 * 24 23 21 38 38 H 1.08996 * 109.71050 * 59.97658 * 25 24 23 39 39 H 1.09006 * 109.71132 * 180.60552 * 25 24 23 40 40 H 1.08004 * 119.91473 * 179.72709 * 27 12 11 41 41 H 1.08003 * 120.08648 * 180.23668 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6963 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0968 1.6965 1.2126 7 6 2.0085 -1.2113 0.0005 8 1 3.0600 -1.2276 0.2463 9 6 1.3398 -2.4122 -0.3200 10 6 1.8254 -3.6433 0.1636 11 6 1.1747 -4.7995 -0.1504 12 6 0.0302 -4.7656 -0.9483 13 7 -0.6269 -5.9473 -1.2645 14 16 -1.5358 -6.7219 -0.1172 15 8 -0.7100 -6.8455 1.0327 16 8 -2.1371 -7.8343 -0.7654 17 6 -2.8496 -5.6357 0.3283 18 6 -4.0054 -5.6034 -0.4297 19 6 -5.0373 -4.7514 -0.0847 20 6 -4.9136 -3.9218 1.0200 21 6 -3.7549 -3.9598 1.7865 22 6 -2.7229 -4.8170 1.4345 23 8 -3.6173 -3.1625 2.8809 24 6 -4.5148 -2.0518 2.9850 25 6 -5.9328 -2.5487 2.6732 26 8 -5.9376 -3.0867 1.3463 27 6 -0.4536 -3.5503 -1.4348 28 6 0.1837 -2.3857 -1.1245 29 1 -0.4850 0.8401 -0.0004 30 1 2.7113 -3.6710 0.7808 31 1 1.5460 -5.7440 0.2192 32 1 -0.5536 -6.3191 -2.1574 33 1 -4.1019 -6.2451 -1.2931 34 1 -5.9393 -4.7284 -0.6783 35 1 -1.8191 -4.8445 2.0251 36 1 -4.4816 -1.6459 3.9961 37 1 -4.2298 -1.2806 2.2693 38 1 -6.2156 -3.3240 3.3853 39 1 -6.6356 -1.7177 2.7354 40 1 -1.3374 -3.5319 -2.0554 41 1 -0.1940 -1.4455 -1.4986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004706287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:39 Heat of formation + Delta-G solvation = -95.569201 kcal Electronic energy + Delta-G solvation = -30316.085843 eV Core-core repulsion = 26060.518089 eV Total energy + Delta-G solvation = -4255.567754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.28884 -38.02564 -37.73035 -37.32023 -36.73221 -35.41762 -34.79747 -32.84968 -31.38820 -30.75935 -29.61193 -28.76388 -28.61735 -24.98919 -24.78095 -23.07730 -21.41732 -21.16764 -20.81984 -19.30424 -18.69317 -17.72492 -17.43850 -17.37383 -17.13038 -16.48362 -16.19034 -15.48868 -15.38275 -15.03015 -14.71813 -14.47919 -14.06152 -13.96061 -13.85284 -13.74536 -13.47070 -12.94182 -12.82850 -12.37927 -12.12992 -12.04524 -11.69401 -11.68484 -11.56792 -11.49469 -11.36267 -11.22818 -11.16309 -10.92083 -10.87851 -10.78702 -10.47140 -9.95811 -9.80926 -9.30952 -8.95474 -8.78882 -8.22809 -7.66498 -7.38004 -6.91642 -4.50325 0.71726 0.99595 1.32028 2.58637 2.83961 2.97176 2.99798 3.03613 3.08028 3.15014 3.37426 3.66839 3.80338 4.07704 4.16574 4.45133 4.53118 4.65326 4.76262 4.79300 5.03079 5.18163 5.30197 5.36973 5.41373 5.53347 5.78696 5.88373 6.08536 6.18167 6.19539 6.28190 6.36551 6.49001 6.75580 6.87259 6.92063 7.07166 7.20742 7.34571 7.36296 7.49685 7.89761 7.95044 8.01389 8.15120 8.48115 8.72383 8.83281 9.99986 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.008246 B = 0.004599 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.737296 B = 6086.241779 C = 8624.230571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.446 4.446 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.223 4.223 11 C -0.063 4.063 12 C -0.035 4.035 13 N -1.029 6.029 14 S 2.680 3.320 15 O -0.954 6.954 16 O -0.979 6.979 17 C -0.661 4.661 18 C -0.019 4.019 19 C -0.140 4.140 20 C 0.099 3.901 21 C 0.034 3.966 22 C 0.005 3.995 23 O -0.300 6.300 24 C 0.019 3.981 25 C 0.019 3.981 26 O -0.306 6.306 27 C -0.083 4.083 28 C -0.165 4.165 29 H 0.283 0.717 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.407 0.593 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.154 0.846 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.745 -2.212 1.752 11.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.243 4.243 11 C -0.084 4.084 12 C -0.132 4.132 13 N -0.783 5.783 14 S 2.772 3.228 15 O -0.944 6.944 16 O -0.969 6.969 17 C -0.747 4.747 18 C -0.038 4.038 19 C -0.159 4.159 20 C 0.053 3.947 21 C -0.012 4.012 22 C -0.015 4.015 23 O -0.214 6.214 24 C -0.057 4.057 25 C -0.056 4.056 26 O -0.220 6.220 27 C -0.104 4.104 28 C -0.185 4.185 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.244 0.756 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.172 0.828 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.922 -2.826 2.337 11.521 hybrid contribution -0.307 1.662 -0.194 1.701 sum -11.229 -1.164 2.143 11.491 Atomic orbital electron populations 1.69850 1.07608 1.29525 1.33859 1.25991 0.94826 1.01597 0.92159 0.86292 0.80112 0.79789 0.80172 1.18655 1.20276 1.18820 1.19656 0.97432 0.90964 1.39499 0.90046 1.17747 0.90988 0.92149 0.87535 1.20671 1.03691 0.92614 1.07354 1.20613 0.93384 0.97578 0.96832 1.16598 0.99267 0.83560 1.13734 1.52173 1.62461 1.36871 1.26819 1.02771 0.73154 0.72951 0.73875 1.93560 1.65792 1.85198 1.49890 1.93524 1.78149 1.49462 1.75814 1.30816 1.17602 1.20261 1.06004 1.20577 0.90694 0.95328 0.97232 1.20437 1.01071 0.96682 0.97700 1.19117 0.86498 0.92610 0.96431 1.18857 0.94153 0.96956 0.91251 1.20192 0.96651 0.91021 0.93630 1.86367 1.56926 1.38720 1.39429 1.23659 0.88487 0.88297 1.05222 1.23705 0.98689 1.00310 0.82889 1.86300 1.44112 1.59696 1.31844 1.20627 0.98215 0.92389 0.99216 1.21005 0.99144 0.96669 1.01732 0.90649 0.88379 0.88120 0.75577 0.83757 0.84198 0.82831 0.85908 0.89904 0.90344 0.85922 0.89113 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.94 10.83 55.54 0.60 -18.34 16 2 C 0.07 1.72 5.19 -17.34 -0.09 1.63 16 3 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.45 -11.09 9.04 -37.87 -0.34 -11.43 16 8 H 0.08 1.93 7.89 -52.49 -0.41 1.52 16 9 C 0.12 2.98 5.58 -106.79 -0.60 2.39 16 10 C -0.22 -5.23 9.74 -39.26 -0.38 -5.62 16 11 C -0.06 -1.39 9.18 -39.77 -0.37 -1.75 16 12 C -0.04 -0.73 5.80 -83.69 -0.49 -1.22 16 13 N -1.03 -17.75 5.65 32.51 0.18 -17.56 16 14 S 2.68 47.21 5.70 -107.50 -0.61 46.59 16 15 O -0.95 -19.42 16.07 -57.17 -0.92 -20.34 16 16 O -0.98 -17.74 17.43 -57.17 -1.00 -18.74 16 17 C -0.66 -11.29 5.85 -39.59 -0.23 -11.52 16 18 C -0.02 -0.28 9.51 -39.59 -0.38 -0.66 16 19 C -0.14 -1.98 9.96 -39.43 -0.39 -2.37 16 20 C 0.10 1.54 6.49 -39.13 -0.25 1.29 16 21 C 0.03 0.58 6.49 -39.14 -0.25 0.32 16 22 C 0.00 0.09 9.44 -39.42 -0.37 -0.28 16 23 O -0.30 -4.87 10.42 -32.85 -0.34 -5.22 16 24 C 0.02 0.22 7.26 37.40 0.27 0.49 16 25 C 0.02 0.19 7.26 37.40 0.27 0.46 16 26 O -0.31 -4.13 10.42 -32.86 -0.34 -4.48 16 27 C -0.08 -1.80 9.90 -39.77 -0.39 -2.20 16 28 C -0.17 -4.01 8.63 -39.27 -0.34 -4.35 16 29 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 30 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 31 H 0.10 2.10 7.84 -52.48 -0.41 1.68 16 32 H 0.41 5.84 8.95 -34.47 -0.31 5.53 16 33 H 0.14 1.78 7.74 -52.49 -0.41 1.37 16 34 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.15 2.92 7.50 -52.49 -0.39 2.52 16 36 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.12 3.06 6.09 -52.48 -0.32 2.74 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -30.97 363.82 -10.65 -41.63 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.35 Total: 13.29 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -4.33 Total: -34.81 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.79 Total: -35.90 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -2.60 Total: -48.77 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -0.61 Total: 46.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.97 -10.65 -41.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004706287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.943 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds