Wall clock time and date at job start Tue Mar 31 2020 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47509 * 2.32959 * 3 2 1 5 5 N 1.46508 * 109.47345 * 184.89337 * 4 3 2 6 6 C 1.46496 * 120.00010 * 265.22421 * 5 4 3 7 7 C 1.50699 * 109.46945 * 269.13803 * 6 5 4 8 8 H 1.07998 * 120.00474 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00097 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00020 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00300 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46749 * 90.00010 * 11 9 7 13 13 H 1.48501 * 109.47251 * 210.00051 * 11 9 7 14 14 H 1.48496 * 109.46941 * 330.00605 * 11 9 7 15 15 C 1.34770 * 119.99572 * 85.21968 * 5 4 3 16 16 O 1.21281 * 120.00525 * 5.16077 * 15 5 4 17 17 C 1.50702 * 119.99929 * 185.15900 * 15 5 4 18 18 H 1.09003 * 110.85410 * 36.67413 * 17 15 5 19 19 C 1.54637 * 110.97050 * 272.84629 * 17 15 5 20 20 C 1.51286 * 104.25648 * 266.46196 * 19 17 15 21 21 O 1.21281 * 124.94553 * 164.00746 * 20 19 17 22 22 N 1.34420 * 110.11237 * 344.13904 * 20 19 17 23 23 C 1.40028 * 124.35336 * 179.43815 * 22 20 19 24 24 C 1.38843 * 120.04718 * 175.70267 * 23 22 20 25 25 C 1.38118 * 119.95549 * 180.02562 * 24 23 22 26 26 C 1.38471 * 120.04281 * 359.97438 * 25 24 23 27 27 F 1.35099 * 119.95561 * 179.97438 * 26 25 24 28 28 C 1.38475 * 120.08974 * 0.27228 * 26 25 24 29 29 C 1.38112 * 120.04614 * 359.45308 * 28 26 25 30 30 C 1.46765 * 111.30000 * 359.17797 * 22 20 19 31 31 H 1.08997 * 109.47353 * 242.32520 * 3 2 1 32 32 H 1.08999 * 109.46925 * 122.33097 * 3 2 1 33 33 H 1.09003 * 109.47188 * 64.89776 * 4 3 2 34 34 H 1.08995 * 109.47719 * 304.89575 * 4 3 2 35 35 H 1.08998 * 109.47662 * 29.13656 * 6 5 4 36 36 H 1.09000 * 109.47591 * 149.14125 * 6 5 4 37 37 H 0.96997 * 119.99891 * 179.97438 * 10 9 7 38 38 H 1.09004 * 110.47986 * 25.35404 * 19 17 15 39 39 H 1.08993 * 110.48668 * 147.99517 * 19 17 15 40 40 H 1.07996 * 120.02734 * 0.04263 * 24 23 22 41 41 H 1.07993 * 119.98218 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.98042 * 179.70218 * 28 26 25 43 43 H 1.07997 * 120.02568 * 180.29886 * 29 28 26 44 44 H 1.09000 * 110.25097 * 136.27913 * 30 22 20 45 45 H 1.09005 * 110.24531 * 258.28053 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4403 -0.0586 5 7 4.5790 -1.4461 0.0590 6 6 5.4109 -1.4672 -1.1466 7 6 5.7066 -2.8948 -1.5280 8 1 5.3137 -3.7054 -0.9322 9 6 6.4778 -3.1663 -2.6382 10 7 6.9558 -2.1793 -3.3641 11 14 6.8448 -4.9359 -3.1106 12 1 5.7893 -5.4319 -4.0299 13 1 8.1640 -5.0038 -3.7891 14 1 6.8728 -5.7789 -1.8884 15 6 5.1569 -1.4319 1.2764 16 8 4.4716 -1.5089 2.2741 17 6 6.6549 -1.3204 1.3982 18 1 7.0586 -0.6603 0.6304 19 6 7.3205 -2.7149 1.3360 20 6 7.4527 -3.1295 2.7850 21 8 7.6695 -4.2599 3.1671 22 7 7.2922 -2.0630 3.5874 23 6 7.3449 -2.1114 4.9858 24 6 7.2555 -0.9400 5.7258 25 6 7.3082 -0.9898 7.1051 26 6 7.4495 -2.2070 7.7499 27 9 7.5013 -2.2537 9.0991 28 6 7.5439 -3.3760 7.0136 29 6 7.4859 -3.3310 5.6344 30 6 7.0608 -0.8404 2.8092 31 1 2.9711 0.4781 0.9101 32 1 2.9710 0.5504 -0.8684 33 1 2.8290 -1.8901 -1.0083 34 1 2.6859 -2.0129 0.7616 35 1 4.8811 -0.9755 -1.9624 36 1 6.3461 -0.9420 -0.9521 37 1 7.4987 -2.3703 -4.1450 38 1 6.6873 -3.4158 0.7920 39 1 8.3040 -2.6477 0.8711 40 1 7.1446 0.0095 5.2233 41 1 7.2383 -0.0790 7.6811 42 1 7.6589 -4.3239 7.5182 43 1 7.5547 -4.2434 5.0606 44 1 6.2556 -0.2562 3.2550 45 1 7.9740 -0.2475 2.7578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004815910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:27 Heat of formation + Delta-G solvation = -52.731306 kcal Electronic energy + Delta-G solvation = -31859.814874 eV Core-core repulsion = 27371.161953 eV Total energy + Delta-G solvation = -4488.652921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.88251 -41.29690 -39.47005 -38.33750 -36.88149 -36.24734 -35.36139 -33.33441 -32.80080 -31.27542 -31.17304 -28.74698 -27.77662 -27.35871 -25.05775 -23.44009 -23.31483 -22.86818 -21.59838 -19.90293 -18.66769 -17.87101 -17.63910 -17.47023 -17.21580 -16.72561 -16.27200 -15.81390 -15.64617 -15.46818 -15.15494 -14.78475 -14.59748 -14.56091 -14.37051 -13.85831 -13.67530 -13.57201 -13.38206 -13.26499 -13.16897 -12.85723 -12.62323 -12.50789 -12.32702 -12.28446 -12.15390 -11.81822 -11.76297 -11.42300 -11.37502 -11.20521 -11.12741 -10.93999 -10.72551 -10.28161 -10.14127 -9.95437 -9.57820 -9.37314 -9.23071 -8.72744 -8.10670 -7.86857 -6.37444 -4.45390 1.01561 1.13584 2.57660 2.72183 2.78608 2.86131 2.97758 3.13901 3.22900 3.27227 3.43396 3.61003 4.18676 4.20090 4.24411 4.27377 4.50135 4.72566 4.75602 4.80127 4.93480 4.97840 5.11378 5.15599 5.20970 5.24624 5.34816 5.40908 5.53266 5.55145 5.63325 5.79961 5.87100 5.97059 6.01426 6.03598 6.13125 6.20478 6.26020 6.42580 6.44986 6.89377 6.93509 7.03142 7.20108 7.56795 7.62019 7.82144 7.95988 8.08315 8.51740 8.67498 9.24213 10.68912 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008758 B = 0.003223 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.182466 B = 8685.843459 C =11056.709276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.219 3.781 3 C -0.044 4.044 4 C 0.125 3.875 5 N -0.590 5.590 6 C 0.233 3.767 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.072 3.928 10 N -0.887 5.887 11 Si 0.890 3.110 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.522 3.478 16 O -0.558 6.558 17 C -0.116 4.116 18 H 0.132 0.868 19 C -0.132 4.132 20 C 0.521 3.479 21 O -0.513 6.513 22 N -0.553 5.553 23 C 0.174 3.826 24 C -0.132 4.132 25 C -0.124 4.124 26 C 0.060 3.940 27 F -0.146 7.146 28 C -0.123 4.123 29 C -0.133 4.133 30 C 0.112 3.888 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.267 0.733 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.164 0.836 44 H 0.096 0.904 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 6.436 11.182 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.099 4.099 3 C -0.085 4.085 4 C 0.000 4.000 5 N -0.320 5.320 6 C 0.114 3.886 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.133 4.133 10 N -0.524 5.524 11 Si 0.717 3.283 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.310 3.690 16 O -0.438 6.438 17 C -0.137 4.137 18 H 0.149 0.851 19 C -0.172 4.172 20 C 0.312 3.688 21 O -0.389 6.389 22 N -0.275 5.275 23 C 0.079 3.921 24 C -0.153 4.153 25 C -0.143 4.143 26 C 0.040 3.960 27 F -0.124 7.124 28 C -0.142 4.142 29 C -0.154 4.154 30 C -0.010 4.010 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.182 0.818 44 H 0.114 0.886 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.278 5.829 11.701 13.270 hybrid contribution 0.695 -0.845 -0.369 1.155 sum 2.973 4.984 11.332 12.732 Atomic orbital electron populations 1.81194 1.13087 1.08698 1.09527 1.29084 0.95125 0.93035 0.92638 1.19755 0.81431 1.01432 1.05895 1.21139 0.81509 0.93234 1.04126 1.48181 1.05791 1.70359 1.07659 1.19602 0.90249 0.97939 0.80810 1.21421 1.33112 0.92041 1.11647 0.91895 1.24876 0.95189 0.97420 0.95766 1.69889 1.34200 1.31252 1.17092 0.86603 0.77916 0.84642 0.79130 1.20483 1.20967 1.19432 1.20092 0.89376 0.76330 0.83239 1.90676 1.64842 1.51412 1.36877 1.22245 0.94296 0.99538 0.97627 0.85064 1.22343 1.04905 0.97170 0.92775 1.21358 0.74289 0.83733 0.89432 1.90582 1.47835 1.20523 1.79924 1.45812 1.67331 1.10949 1.03456 1.17827 0.98171 0.94335 0.81790 1.20616 1.04386 0.97287 0.92999 1.20862 1.02225 0.96857 0.94400 1.17649 1.06747 0.94797 0.76847 1.91469 1.94310 1.97340 1.29322 1.21033 1.01727 0.97549 0.93880 1.21559 1.01226 0.98716 0.93859 1.22215 1.02238 0.86314 0.90276 0.87389 0.86975 0.88954 0.90168 0.94091 0.93858 0.92312 0.85123 0.86202 0.84635 0.84546 0.84567 0.81846 0.88573 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.03 18.54 42.15 0.78 -6.25 16 2 C 0.22 2.86 15.43 -20.76 -0.32 2.54 16 3 C -0.04 -0.48 5.99 -29.53 -0.18 -0.65 16 4 C 0.13 1.73 5.35 -4.04 -0.02 1.71 16 5 N -0.59 -9.13 2.47 -175.06 -0.43 -9.56 16 6 C 0.23 4.19 5.01 -5.20 -0.03 4.16 16 7 C -0.54 -11.60 7.96 -34.44 -0.27 -11.87 16 8 H 0.06 1.41 7.49 -52.49 -0.39 1.01 16 9 C 0.07 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -21.12 13.29 55.43 0.74 -20.38 16 11 Si 0.89 18.59 29.54 -169.99 -5.02 13.57 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 15 C 0.52 8.05 6.74 -10.99 -0.07 7.98 16 16 O -0.56 -9.88 15.52 5.56 0.09 -9.79 16 17 C -0.12 -1.48 2.68 -90.14 -0.24 -1.72 16 18 H 0.13 1.47 6.38 -51.93 -0.33 1.14 16 19 C -0.13 -1.93 6.18 -26.74 -0.17 -2.10 16 20 C 0.52 8.32 7.93 -10.86 -0.09 8.23 16 21 O -0.51 -9.53 14.80 5.56 0.08 -9.45 16 22 N -0.55 -7.61 3.14 -112.25 -0.35 -7.96 16 23 C 0.17 2.35 6.60 -83.66 -0.55 1.80 16 24 C -0.13 -1.46 9.40 -39.40 -0.37 -1.83 16 25 C -0.12 -1.32 10.02 -39.54 -0.40 -1.72 16 26 C 0.06 0.72 7.30 -39.41 -0.29 0.43 16 27 F -0.15 -1.78 17.26 2.25 0.04 -1.74 16 28 C -0.12 -1.50 10.02 -39.54 -0.40 -1.90 16 29 C -0.13 -1.87 9.29 -39.40 -0.37 -2.24 16 30 C 0.11 1.23 5.50 -3.12 -0.02 1.21 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.29 8.04 -51.93 -0.42 0.87 16 34 H 0.08 1.20 7.50 -51.93 -0.39 0.81 16 35 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.04 0.77 5.91 -51.93 -0.31 0.46 16 37 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 38 H 0.13 2.27 6.28 -51.93 -0.33 1.94 16 39 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.14 1.17 6.96 -52.49 -0.37 0.81 16 41 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 43 H 0.16 2.56 5.23 -52.49 -0.27 2.28 16 44 H 0.10 1.04 6.87 -51.93 -0.36 0.68 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -28.63 388.46 -7.35 -35.98 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.25 Total: 4.18 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -3.87 Total: 5.56 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.73 Total: -44.15 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.17 Total: -19.24 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.63 -7.35 -35.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004815910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.755 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds