Wall clock time and date at job start Tue Mar 31 2020 05:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99615 * 2 1 4 4 H 1.48507 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47022 * 299.99861 * 3 2 1 6 6 H 1.48500 * 109.47209 * 60.00398 * 3 2 1 7 7 C 1.38657 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99568 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00045 * 174.93710 * 9 7 2 11 11 C 1.38906 * 120.06635 * 5.59703 * 10 9 7 12 12 C 1.38082 * 119.92459 * 179.70294 * 11 10 9 13 13 C 1.38320 * 120.06830 * 0.59383 * 12 11 10 14 14 C 1.38274 * 120.14469 * 359.68292 * 13 12 11 15 15 C 1.38129 * 120.06217 * 0.02562 * 14 13 12 16 16 C 1.50708 * 120.02949 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.45470 * 180.02562 * 16 15 14 18 18 C 1.52900 * 109.45928 * 60.05294 * 16 15 14 19 19 C 1.50539 * 109.74299 * 288.72354 * 18 16 15 20 20 O 1.21284 * 119.74109 * 145.08982 * 19 18 16 21 21 N 1.34574 * 120.52531 * 325.05618 * 19 18 16 22 22 C 1.39449 * 120.56158 * 0.43868 * 21 19 18 23 23 C 1.41105 * 120.25712 * 198.81359 * 22 21 19 24 24 C 1.40368 * 121.28994 * 359.82960 * 23 22 21 25 25 C 1.36159 * 119.67660 * 180.02562 * 24 23 22 26 26 C 1.39348 * 120.96678 * 359.97438 * 25 24 23 27 27 C 1.36098 * 120.96136 * 0.03444 * 26 25 24 28 28 C 1.40559 * 119.65940 * 359.97438 * 27 26 25 29 29 C 1.40541 * 121.22224 * 179.97438 * 28 27 26 30 30 C 1.36081 * 119.98534 * 180.02562 * 29 28 27 31 31 C 1.37796 * 120.20147 * 18.79231 * 22 21 19 32 32 H 0.97001 * 120.00331 * 0.02562 * 1 2 3 33 33 H 1.07996 * 120.03565 * 359.97438 * 11 10 9 34 34 H 1.07998 * 119.96029 * 180.32395 * 12 11 10 35 35 H 1.08004 * 119.92823 * 179.70492 * 13 12 11 36 36 H 1.08000 * 119.97022 * 179.97438 * 14 13 12 37 37 H 1.09000 * 109.42329 * 48.75504 * 18 16 15 38 38 H 1.09001 * 109.42176 * 168.59188 * 18 16 15 39 39 H 0.96998 * 119.71707 * 180.41451 * 21 19 18 40 40 H 1.08000 * 120.16179 * 0.02562 * 24 23 22 41 41 H 1.08001 * 119.51428 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.51750 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.17298 * 180.02562 * 27 26 25 44 44 H 1.08007 * 120.00820 * 0.09213 * 29 28 27 45 45 H 1.07991 * 119.42375 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1078 11 6 3.4574 -3.4395 -0.0942 12 6 4.2024 -4.5975 -0.1973 13 6 3.5686 -5.8201 -0.3265 14 6 2.1876 -5.8877 -0.3461 15 6 1.4367 -4.7334 -0.2373 16 6 -0.0683 -4.8079 -0.2594 17 1 -0.4829 -3.8045 -0.1629 18 6 -0.5527 -5.6732 0.9044 19 6 -0.2176 -7.1166 0.6387 20 8 0.0880 -7.8429 1.5607 21 7 -0.2550 -7.6077 -0.6136 22 6 -0.5959 -6.7860 -1.6875 23 6 -1.0191 -7.3514 -2.9091 24 6 -1.1047 -8.7423 -3.0778 25 6 -1.5166 -9.2526 -4.2710 26 6 -1.8561 -8.4138 -5.3307 27 6 -1.7849 -7.0607 -5.2032 28 6 -1.3637 -6.4980 -3.9859 29 6 -1.2776 -5.1053 -3.8183 30 6 -0.8661 -4.5876 -2.6289 31 6 -0.5221 -5.4157 -1.5626 32 1 -0.4851 0.8400 -0.0004 33 1 3.9529 -2.4846 0.0014 34 1 5.2811 -4.5481 -0.1816 35 1 4.1535 -6.7240 -0.4118 36 1 1.6956 -6.8438 -0.4475 37 1 -0.0631 -5.3515 1.8236 38 1 -1.6319 -5.5648 1.0122 39 1 -0.0428 -8.5410 -0.7707 40 1 -0.8451 -9.4045 -2.2650 41 1 -1.5811 -10.3232 -4.3981 42 1 -2.1803 -8.8437 -6.2669 43 1 -2.0515 -6.4225 -6.0326 44 1 -1.5390 -4.4460 -4.6328 45 1 -0.8029 -3.5161 -2.5102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004838248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:39 Heat of formation + Delta-G solvation = 10.511440 kcal Electronic energy + Delta-G solvation = -31734.336827 eV Core-core repulsion = 27646.902791 eV Total energy + Delta-G solvation = -4087.434036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.131 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.50114 -39.63971 -38.98193 -37.16838 -36.31062 -35.14477 -33.92667 -32.32524 -31.58648 -29.98032 -29.37030 -28.77221 -28.45044 -25.40953 -24.79368 -23.21673 -23.08288 -22.17452 -21.43766 -20.84485 -19.35279 -18.19172 -18.04476 -17.35170 -16.86686 -16.66640 -16.01644 -15.66438 -15.27747 -14.81173 -14.65874 -14.46804 -14.23525 -14.04764 -13.92234 -13.70960 -13.66897 -13.50363 -13.25121 -12.81086 -12.66398 -12.52946 -12.22620 -11.91814 -11.74057 -11.59017 -11.40668 -11.34808 -11.08226 -10.96524 -10.85614 -10.67341 -10.59803 -10.50120 -10.42244 -9.79553 -9.45424 -9.27150 -8.89614 -8.51508 -8.11606 -7.40991 -7.27125 -6.51328 -4.09463 0.49004 1.00232 1.85262 2.10654 2.33455 2.67895 3.04837 3.07913 3.09125 3.11230 3.15861 3.91723 4.11290 4.42501 4.49222 4.59228 4.75457 4.80572 4.92382 5.00598 5.06080 5.17564 5.19224 5.25228 5.26954 5.38519 5.45618 5.52223 5.63215 5.70633 5.83789 5.85832 5.87959 6.06041 6.07930 6.14836 6.20623 6.24570 6.36868 6.37592 6.44658 6.64262 6.64963 6.74376 6.80948 6.87039 6.96113 7.07691 7.19439 7.22191 7.33238 7.35869 7.77315 7.93822 8.05109 8.95607 9.62188 10.66343 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.003509 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.949980 B = 7977.730995 C = 9126.842532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.174 6.174 10 C 0.164 3.836 11 C -0.231 4.231 12 C -0.072 4.072 13 C -0.209 4.209 14 C -0.076 4.076 15 C -0.157 4.157 16 C 0.005 3.995 17 H 0.120 0.880 18 C -0.131 4.131 19 C 0.532 3.468 20 O -0.529 6.529 21 N -0.663 5.663 22 C 0.161 3.839 23 C -0.067 4.067 24 C -0.106 4.106 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.104 4.104 28 C -0.030 4.030 29 C -0.133 4.133 30 C -0.063 4.063 31 C -0.090 4.090 32 H 0.269 0.731 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.405 0.595 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 -12.635 -8.428 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.110 3.890 11 C -0.250 4.250 12 C -0.090 4.090 13 C -0.228 4.228 14 C -0.094 4.094 15 C -0.158 4.158 16 C -0.013 4.013 17 H 0.138 0.862 18 C -0.171 4.171 19 C 0.322 3.678 20 O -0.405 6.405 21 N -0.308 5.308 22 C 0.065 3.935 23 C -0.069 4.069 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.122 4.122 28 C -0.030 4.030 29 C -0.152 4.152 30 C -0.081 4.081 31 C -0.094 4.094 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.243 0.757 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.814 -12.646 -7.752 15.315 hybrid contribution 0.793 0.384 -0.195 0.903 sum -3.021 -12.261 -7.947 14.921 Atomic orbital electron populations 1.70014 1.05806 1.27574 1.46235 1.25214 0.95826 0.98625 0.96516 0.85694 0.79220 0.80564 0.78266 1.19168 1.20161 1.20172 1.21344 0.91827 0.80701 1.52842 0.89130 1.83913 1.34119 1.11259 1.78506 1.19046 0.90077 0.87510 0.92367 1.21168 0.93693 0.99002 1.11125 1.20777 0.98513 0.92398 0.97355 1.20560 0.94190 0.97014 1.11080 1.20798 0.93955 0.96693 0.98002 1.18608 0.93097 0.91257 1.12852 1.18824 0.92908 1.00672 0.88885 0.86189 1.21841 1.03813 0.89787 1.01665 1.20834 0.74831 0.90971 0.81177 1.90747 1.46486 1.60817 1.42443 1.43587 1.67535 1.13556 1.06126 1.17402 0.99181 0.89861 0.87095 1.17615 1.02936 0.93520 0.92804 1.20768 1.00210 0.93495 0.97899 1.20732 1.00288 0.99776 0.93233 1.20806 1.00372 0.93703 0.98824 1.21025 0.99441 0.95314 0.96406 1.17889 0.98754 0.93322 0.93051 1.20911 1.02752 0.93321 0.98200 1.20771 0.95077 1.00796 0.91478 1.19583 1.01740 0.90679 0.97350 0.92077 0.85396 0.87487 0.87813 0.87092 0.86963 0.87866 0.75652 0.86305 0.86168 0.86155 0.85451 0.85318 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.43 13.67 55.48 0.76 -22.67 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.66 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.23 9.49 30.89 0.29 -9.93 16 8 H 0.09 2.24 5.20 -52.48 -0.27 1.97 16 9 O -0.17 -4.51 8.53 0.06 0.00 -4.51 16 10 C 0.16 3.72 6.62 -39.11 -0.26 3.46 16 11 C -0.23 -4.90 9.17 -39.39 -0.36 -5.26 16 12 C -0.07 -1.34 10.04 -39.61 -0.40 -1.74 16 13 C -0.21 -3.82 10.04 -39.54 -0.40 -4.22 16 14 C -0.08 -1.43 8.39 -39.61 -0.33 -1.76 16 15 C -0.16 -3.13 4.75 -104.43 -0.50 -3.63 16 16 C 0.01 0.10 2.67 -92.93 -0.25 -0.15 16 17 H 0.12 2.37 6.91 -51.93 -0.36 2.01 16 18 C -0.13 -2.10 5.50 -28.01 -0.15 -2.25 16 19 C 0.53 8.56 5.55 -11.15 -0.06 8.50 16 20 O -0.53 -9.88 17.92 5.55 0.10 -9.78 16 21 N -0.66 -9.20 3.85 -9.78 -0.04 -9.23 16 22 C 0.16 2.32 6.00 -83.47 -0.50 1.82 16 23 C -0.07 -0.89 5.75 -106.71 -0.61 -1.50 16 24 C -0.11 -1.16 9.47 -39.53 -0.37 -1.53 16 25 C -0.12 -1.17 9.95 -39.92 -0.40 -1.57 16 26 C -0.12 -1.12 9.95 -39.94 -0.40 -1.51 16 27 C -0.10 -1.09 9.77 -39.48 -0.39 -1.47 16 28 C -0.03 -0.38 5.74 -106.85 -0.61 -0.99 16 29 C -0.13 -1.76 9.75 -39.49 -0.38 -2.14 16 30 C -0.06 -0.97 9.57 -39.95 -0.38 -1.35 16 31 C -0.09 -1.44 4.71 -104.34 -0.49 -1.93 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.11 1.94 4.37 -52.49 -0.23 1.71 16 37 H 0.11 1.86 8.09 -51.93 -0.42 1.44 16 38 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.41 4.77 7.12 -40.82 -0.29 4.48 16 40 H 0.12 1.08 6.59 -52.49 -0.35 0.74 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 45 H 0.14 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -30.43 369.99 -10.41 -40.84 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -4.73 Total: 13.31 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -7.05 Total: -28.16 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.72 Total: -31.91 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.10 Total: -14.29 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.43 -10.41 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004838248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.350 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds