Wall clock time and date at job start Tue Mar 31 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99615 * 2 1 4 4 H 1.48507 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47022 * 299.99861 * 3 2 1 6 6 H 1.48500 * 109.47209 * 60.00398 * 3 2 1 7 7 C 1.38657 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99568 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00045 * 174.93710 * 9 7 2 11 11 C 1.38906 * 120.06635 * 5.59703 * 10 9 7 12 12 C 1.38082 * 119.92459 * 179.70294 * 11 10 9 13 13 C 1.38320 * 120.06830 * 0.59383 * 12 11 10 14 14 C 1.38274 * 120.14469 * 359.68292 * 13 12 11 15 15 C 1.38129 * 120.06217 * 0.02562 * 14 13 12 16 16 C 1.50708 * 120.02949 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.45470 * 180.02562 * 16 15 14 18 18 C 1.52900 * 109.45928 * 60.05294 * 16 15 14 19 19 C 1.50539 * 109.74299 * 288.72354 * 18 16 15 20 20 O 1.21284 * 119.74109 * 145.08982 * 19 18 16 21 21 N 1.34574 * 120.52531 * 325.05618 * 19 18 16 22 22 C 1.39449 * 120.56158 * 0.43868 * 21 19 18 23 23 C 1.41105 * 120.25712 * 198.81359 * 22 21 19 24 24 C 1.40368 * 121.28994 * 359.82960 * 23 22 21 25 25 C 1.36159 * 119.67660 * 180.02562 * 24 23 22 26 26 C 1.39348 * 120.96678 * 359.97438 * 25 24 23 27 27 C 1.36098 * 120.96136 * 0.03444 * 26 25 24 28 28 C 1.40559 * 119.65940 * 359.97438 * 27 26 25 29 29 C 1.40541 * 121.22224 * 179.97438 * 28 27 26 30 30 C 1.36081 * 119.98534 * 180.02562 * 29 28 27 31 31 C 1.37796 * 120.20147 * 18.79231 * 22 21 19 32 32 H 0.97001 * 120.00331 * 0.02562 * 1 2 3 33 33 H 1.07996 * 120.03565 * 359.97438 * 11 10 9 34 34 H 1.07998 * 119.96029 * 180.32395 * 12 11 10 35 35 H 1.08004 * 119.92823 * 179.70492 * 13 12 11 36 36 H 1.08000 * 119.97022 * 179.97438 * 14 13 12 37 37 H 1.09000 * 109.42329 * 48.75504 * 18 16 15 38 38 H 1.09001 * 109.42176 * 168.59188 * 18 16 15 39 39 H 0.96998 * 119.71707 * 180.41451 * 21 19 18 40 40 H 1.08000 * 120.16179 * 0.02562 * 24 23 22 41 41 H 1.08001 * 119.51428 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.51750 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.17298 * 180.02562 * 27 26 25 44 44 H 1.08007 * 120.00820 * 0.09213 * 29 28 27 45 45 H 1.07991 * 119.42375 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1078 11 6 3.4574 -3.4395 -0.0942 12 6 4.2024 -4.5975 -0.1973 13 6 3.5686 -5.8201 -0.3265 14 6 2.1876 -5.8877 -0.3461 15 6 1.4367 -4.7334 -0.2373 16 6 -0.0683 -4.8079 -0.2594 17 1 -0.4829 -3.8045 -0.1629 18 6 -0.5527 -5.6732 0.9044 19 6 -0.2176 -7.1166 0.6387 20 8 0.0880 -7.8429 1.5607 21 7 -0.2550 -7.6077 -0.6136 22 6 -0.5959 -6.7860 -1.6875 23 6 -1.0191 -7.3514 -2.9091 24 6 -1.1047 -8.7423 -3.0778 25 6 -1.5166 -9.2526 -4.2710 26 6 -1.8561 -8.4138 -5.3307 27 6 -1.7849 -7.0607 -5.2032 28 6 -1.3637 -6.4980 -3.9859 29 6 -1.2776 -5.1053 -3.8183 30 6 -0.8661 -4.5876 -2.6289 31 6 -0.5221 -5.4157 -1.5626 32 1 -0.4851 0.8400 -0.0004 33 1 3.9529 -2.4846 0.0014 34 1 5.2811 -4.5481 -0.1816 35 1 4.1535 -6.7240 -0.4118 36 1 1.6956 -6.8438 -0.4475 37 1 -0.0631 -5.3515 1.8236 38 1 -1.6319 -5.5648 1.0122 39 1 -0.0428 -8.5410 -0.7707 40 1 -0.8451 -9.4045 -2.2650 41 1 -1.5811 -10.3232 -4.3981 42 1 -2.1803 -8.8437 -6.2669 43 1 -2.0515 -6.4225 -6.0326 44 1 -1.5390 -4.4460 -4.6328 45 1 -0.8029 -3.5161 -2.5102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004838248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:37 Heat of formation + Delta-G solvation = -4.451485 kcal Electronic energy + Delta-G solvation = -31734.985668 eV Core-core repulsion = 27646.902791 eV Total energy + Delta-G solvation = -4088.082877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.131 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.72167 -40.86432 -40.47578 -38.48843 -37.81970 -36.28775 -35.20984 -34.23284 -32.53899 -31.21349 -30.73039 -30.35099 -29.50399 -27.31805 -26.06096 -24.32302 -24.19128 -23.32895 -22.97832 -22.22614 -20.55207 -19.83365 -19.26756 -18.87690 -18.18954 -17.76369 -17.30209 -16.79883 -16.58144 -16.31194 -16.19273 -15.87942 -15.61513 -15.46286 -15.18129 -15.03787 -14.81600 -14.63946 -14.39194 -14.35896 -14.17570 -13.62824 -13.54418 -13.44465 -13.24471 -13.01327 -12.72365 -12.55895 -12.46419 -12.33394 -12.15922 -12.05585 -11.88810 -11.85430 -11.71447 -11.16645 -11.13380 -10.78479 -10.26235 -9.72581 -9.48840 -8.97679 -8.45987 -8.43512 -6.09680 -0.49516 0.01512 0.48736 0.71588 0.87847 1.37393 1.43762 1.46583 1.53382 1.87805 2.07695 2.18440 2.82043 3.12152 3.14822 3.24681 3.46081 3.58190 3.65154 3.79066 3.90102 3.91740 4.03933 4.11726 4.17767 4.24818 4.25902 4.40339 4.40478 4.52236 4.58036 4.62556 4.67209 4.80401 4.83285 4.86975 5.01292 5.02918 5.17207 5.21622 5.25798 5.33229 5.42733 5.54437 5.60640 5.63747 5.66094 5.71251 5.73434 5.75862 6.00491 6.04144 6.07848 6.19083 6.82094 7.01950 7.79076 8.78138 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.003509 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.949980 B = 7977.730995 C = 9126.842532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.013 4.013 3 Si 1.009 2.991 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.213 6.213 10 C 0.128 3.872 11 C -0.244 4.244 12 C -0.072 4.072 13 C -0.196 4.196 14 C -0.084 4.084 15 C -0.154 4.154 16 C 0.011 3.989 17 H 0.084 0.916 18 C -0.131 4.131 19 C 0.538 3.462 20 O -0.555 6.555 21 N -0.648 5.648 22 C 0.161 3.839 23 C -0.076 4.076 24 C -0.120 4.120 25 C -0.111 4.111 26 C -0.111 4.111 27 C -0.111 4.111 28 C -0.045 4.045 29 C -0.120 4.120 30 C -0.093 4.093 31 C -0.109 4.109 32 H 0.272 0.728 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.418 0.582 40 H 0.136 0.864 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 -15.885 -10.803 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.211 4.211 3 Si 0.830 3.170 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.114 0.886 9 O -0.119 6.119 10 C 0.077 3.923 11 C -0.263 4.263 12 C -0.090 4.090 13 C -0.215 4.215 14 C -0.103 4.103 15 C -0.156 4.156 16 C -0.008 4.008 17 H 0.103 0.897 18 C -0.171 4.171 19 C 0.328 3.672 20 O -0.433 6.433 21 N -0.294 5.294 22 C 0.065 3.935 23 C -0.078 4.078 24 C -0.138 4.138 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.046 4.046 29 C -0.139 4.139 30 C -0.111 4.111 31 C -0.112 4.112 32 H 0.081 0.919 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.259 0.741 40 H 0.154 0.846 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.026 -15.946 -10.155 19.146 hybrid contribution 0.539 1.059 0.362 1.242 sum -2.487 -14.887 -9.793 17.992 Atomic orbital electron populations 1.70150 1.07569 1.28524 1.48501 1.26343 0.96754 1.02046 0.95972 0.84654 0.78272 0.75663 0.78461 1.17947 1.19421 1.19597 1.21759 0.92345 0.81495 1.53190 0.88621 1.83910 1.35107 1.11952 1.80910 1.19554 0.91136 0.87672 0.93964 1.21328 0.93338 1.00046 1.11608 1.21130 1.00235 0.91402 0.96213 1.21059 0.94130 0.98209 1.08101 1.21070 0.94612 0.96700 0.97871 1.18965 0.94552 0.90881 1.11167 1.18634 0.91670 0.99485 0.90993 0.89730 1.21794 1.04933 0.90011 1.00316 1.20613 0.74504 0.90434 0.81608 1.90736 1.48008 1.61229 1.43330 1.43362 1.66696 1.14093 1.05202 1.17373 0.99381 0.89021 0.87740 1.17821 1.02956 0.94935 0.92087 1.21012 1.00924 0.92440 0.99432 1.21197 0.97755 1.01600 0.92309 1.21270 0.98415 0.93159 1.00055 1.21319 0.99130 0.96477 0.95910 1.18148 0.99261 0.92876 0.94267 1.21135 1.00855 0.94379 0.97517 1.20612 0.98000 0.99557 0.92959 1.19381 1.03752 0.91666 0.96446 0.91935 0.86055 0.83894 0.84266 0.85540 0.88199 0.85961 0.74096 0.84603 0.82982 0.82830 0.83223 0.83314 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.95 13.67 21.61 0.30 -52.65 16 2 C -0.01 -0.68 5.49 84.83 0.47 -0.21 16 3 Si 1.01 41.80 29.55 68.60 2.03 43.83 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 7 C -0.41 -23.01 9.49 67.92 0.64 -22.37 16 8 H 0.10 5.02 5.20 -2.91 -0.02 5.00 16 9 O -0.21 -12.01 8.53 -22.70 -0.19 -12.20 16 10 C 0.13 6.19 6.62 22.58 0.15 6.34 16 11 C -0.24 -10.68 9.17 22.39 0.21 -10.47 16 12 C -0.07 -2.58 10.04 22.25 0.22 -2.35 16 13 C -0.20 -6.75 10.04 22.30 0.22 -6.53 16 14 C -0.08 -3.13 8.39 22.25 0.19 -2.94 16 15 C -0.15 -6.50 4.75 -19.74 -0.09 -6.59 16 16 C 0.01 0.42 2.67 -12.29 -0.03 0.38 16 17 H 0.08 3.82 6.91 -2.39 -0.02 3.81 16 18 C -0.13 -4.43 5.50 29.76 0.16 -4.27 16 19 C 0.54 17.33 5.55 87.64 0.49 17.82 16 20 O -0.56 -20.52 17.92 -3.04 -0.05 -20.57 16 21 N -0.65 -17.34 3.85 -303.37 -1.17 -18.50 16 22 C 0.16 4.59 6.00 38.53 0.23 4.82 16 23 C -0.08 -1.88 5.75 -21.21 -0.12 -2.01 16 24 C -0.12 -2.22 9.47 22.30 0.21 -2.01 16 25 C -0.11 -1.58 9.95 22.05 0.22 -1.36 16 26 C -0.11 -1.54 9.95 22.04 0.22 -1.32 16 27 C -0.11 -1.93 9.77 22.34 0.22 -1.71 16 28 C -0.04 -1.08 5.74 -21.31 -0.12 -1.20 16 29 C -0.12 -3.21 9.75 22.33 0.22 -2.99 16 30 C -0.09 -3.09 9.57 22.03 0.21 -2.88 16 31 C -0.11 -3.69 4.71 -19.68 -0.09 -3.78 16 32 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 34 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 36 H 0.13 4.27 4.37 -2.91 -0.01 4.26 16 37 H 0.10 3.58 8.09 -2.39 -0.02 3.56 16 38 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.42 8.97 7.12 -92.71 -0.66 8.31 16 40 H 0.14 1.97 6.59 -2.91 -0.02 1.95 16 41 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 43 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 45 H 0.11 4.20 8.06 -2.92 -0.02 4.17 16 Total: -1.00 -71.28 369.99 5.13 -66.16 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: 0.41 Total: 39.58 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 3.81 Total: -45.64 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -0.87 Total: -71.16 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.25 Total: -32.77 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -71.28 5.13 -66.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004838248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.707 kcal (2) G-P(sol) polarization free energy of solvation -71.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds