Wall clock time and date at job start Tue Mar 31 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99588 * 2 1 4 4 C 1.50704 * 109.47162 * 269.99820 * 3 2 1 5 5 H 1.08005 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99662 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00371 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99402 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47598 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47109 * 120.00465 * 8 6 4 11 11 H 1.48509 * 109.47269 * 240.00083 * 8 6 4 12 12 C 1.34772 * 120.00443 * 180.02562 * 2 1 3 13 13 O 1.21653 * 120.00467 * 179.80820 * 12 2 1 14 14 C 1.46902 * 119.99573 * 359.80902 * 12 2 1 15 15 C 1.33942 * 124.73352 * 171.12100 * 14 12 2 16 16 C 1.40040 * 115.61736 * 180.02562 * 15 14 12 17 17 C 1.39772 * 112.55783 * 0.02562 * 16 15 14 18 18 S 1.75552 * 124.73520 * 351.14024 * 14 12 2 19 19 C 1.42025 * 118.55285 * 179.97438 * 17 16 15 20 20 C 1.40004 * 121.17137 * 180.02562 * 19 17 16 21 21 C 1.36438 * 119.62520 * 180.02562 * 20 19 17 22 22 C 1.39098 * 120.75010 * 359.95267 * 21 20 19 23 23 C 1.36345 * 120.98056 * 0.02686 * 22 21 20 24 24 C 1.40288 * 119.77292 * 359.97438 * 23 22 21 25 25 N 1.34199 * 120.89665 * 180.02562 * 24 23 22 26 26 C 1.30338 * 122.33156 * 179.97438 * 25 24 23 27 27 Cl 1.73606 * 119.04136 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.47217 * 263.39882 * 1 2 3 29 29 H 1.09005 * 109.47575 * 23.39635 * 1 2 3 30 30 H 1.09002 * 109.47234 * 143.39893 * 1 2 3 31 31 H 1.08997 * 109.47135 * 30.00313 * 3 2 1 32 32 H 1.09005 * 109.46611 * 150.00423 * 3 2 1 33 33 H 0.96998 * 120.00163 * 180.02562 * 7 6 4 34 34 H 1.07994 * 122.18620 * 0.04476 * 15 14 12 35 35 H 1.07997 * 120.19217 * 359.97438 * 20 19 17 36 36 H 1.07999 * 119.63213 * 179.97438 * 21 20 19 37 37 H 1.07995 * 119.51225 * 180.30079 * 22 21 20 38 38 H 1.07993 * 120.11397 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5548 3.6172 -0.6731 8 14 3.4374 3.4171 -3.4339 9 1 2.8585 2.4178 -4.3673 10 1 2.8004 4.7383 -3.6665 11 1 4.9000 3.5248 -3.6680 12 6 2.1389 -1.1671 -0.0005 13 8 3.3555 -1.1671 -0.0040 14 6 1.4044 -2.4393 0.0031 15 6 1.9642 -3.6442 -0.1669 16 6 1.0830 -4.7320 -0.1293 17 6 -0.2421 -4.3415 0.0828 18 16 -0.3295 -2.5926 0.2305 19 6 -1.2445 -5.3458 0.1429 20 6 -2.5890 -5.0162 0.3524 21 6 -3.5259 -6.0067 0.4051 22 6 -3.1606 -7.3401 0.2520 23 6 -1.8596 -7.6922 0.0463 24 6 -0.8703 -6.6993 -0.0134 25 7 0.4170 -7.0204 -0.2154 26 6 1.3585 -6.1212 -0.2763 27 17 2.9962 -6.6323 -0.5418 28 1 -0.3634 -0.1181 1.0209 29 1 -0.3634 0.9432 -0.4081 30 1 -0.3634 -0.8250 -0.6127 31 1 1.6083 2.0284 0.5139 32 1 3.1499 1.1384 0.5138 33 1 4.0316 4.4431 -0.8503 34 1 3.0256 -3.7686 -0.3224 35 1 -2.8828 -3.9840 0.4725 36 1 -4.5630 -5.7526 0.5672 37 1 -3.9193 -8.1075 0.2924 38 1 -1.5917 -8.7317 -0.0712 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004938461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:54 Heat of formation + Delta-G solvation = 40.953328 kcal Electronic energy + Delta-G solvation = -25825.052908 eV Core-core repulsion = 21977.999947 eV Total energy + Delta-G solvation = -3847.052961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.044 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.19186 -39.34768 -38.10520 -36.79896 -35.82076 -35.04139 -32.94800 -32.56546 -30.55946 -29.70680 -28.00230 -26.40390 -25.30780 -24.53890 -23.27204 -22.64045 -21.38990 -19.62714 -18.50371 -17.86437 -17.67397 -16.66757 -16.53633 -15.71755 -15.49474 -15.38758 -15.10801 -14.81535 -14.72823 -14.53797 -14.39751 -13.65495 -13.21761 -13.09266 -13.01174 -12.83878 -12.61828 -12.19843 -12.18899 -12.11640 -11.85592 -11.48436 -11.35513 -11.27811 -11.08980 -10.89239 -10.69124 -10.25890 -10.20650 -9.92520 -9.76309 -9.40400 -9.24519 -8.53027 -8.52831 -8.22092 -7.82712 -6.13826 -4.19352 -0.18989 0.05182 1.11354 1.27861 1.38730 1.65363 1.69314 2.57083 3.25068 3.33013 3.35699 3.48634 3.61323 3.69505 4.05010 4.17405 4.30737 4.37339 4.44352 4.55939 4.75208 4.79563 4.93982 5.09175 5.14900 5.20403 5.23377 5.53356 5.56683 5.58436 5.79562 5.86317 5.90342 5.92623 5.99249 6.03256 6.39026 6.83996 7.23796 7.32390 7.35700 7.81470 8.07286 8.10399 8.66030 8.86597 9.46315 10.94375 Molecular weight = 360.04amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002745 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.014135 B =10198.584991 C =11414.012452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.590 5.590 3 C 0.246 3.754 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.572 3.428 13 O -0.516 6.516 14 C -0.209 4.209 15 C -0.043 4.043 16 C -0.123 4.123 17 C -0.135 4.135 18 S 0.228 5.772 19 C -0.055 4.055 20 C -0.095 4.095 21 C -0.110 4.110 22 C -0.100 4.100 23 C -0.086 4.086 24 C 0.140 3.860 25 N -0.475 5.475 26 C 0.270 3.730 27 Cl -0.017 7.017 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.163 0.837 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 -19.782 3.551 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.322 5.322 3 C 0.128 3.872 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.356 3.644 13 O -0.393 6.393 14 C -0.329 4.329 15 C -0.074 4.074 16 C -0.137 4.137 17 C -0.257 4.257 18 S 0.498 5.502 19 C -0.060 4.060 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.105 4.105 24 C 0.022 3.978 25 N -0.186 5.186 26 C 0.081 3.919 27 Cl 0.012 6.988 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.180 0.820 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.857 -19.445 3.748 25.369 hybrid contribution 1.262 0.065 -1.202 1.744 sum -14.595 -19.379 2.546 24.394 Atomic orbital electron populations 1.21888 0.81935 1.03115 1.01066 1.48090 1.05879 1.07793 1.70413 1.19447 0.92681 0.77109 0.98010 1.21437 1.37002 1.06507 0.92045 0.92221 1.24927 0.95141 0.96285 0.97605 1.69930 1.38089 1.14347 1.30764 0.86422 0.78208 0.78343 0.84350 1.19730 1.20883 1.20757 1.16923 0.86947 0.81771 0.78731 1.90830 1.12269 1.86153 1.50067 1.24325 0.96991 0.99011 1.12549 1.20052 1.01762 0.88757 0.96867 1.18477 0.93044 0.93195 1.09009 1.24360 0.95567 1.02420 1.03366 1.84760 1.03727 0.92091 1.69670 1.17990 0.93425 0.92029 1.02548 1.20940 0.91061 1.00224 0.99236 1.20961 0.99922 0.92659 0.99306 1.20945 0.95968 0.96622 0.98489 1.20766 0.91341 0.99017 0.99378 1.18414 0.89299 0.91014 0.99088 1.66927 1.00002 1.36461 1.15205 1.21764 0.88407 0.87245 0.94525 1.98433 1.14875 1.91751 1.93762 0.92329 0.88091 0.91973 0.94345 0.93290 0.92602 0.81983 0.85111 0.85018 0.84875 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.89 59.85 0.53 1.51 16 2 N -0.59 -12.04 2.86 -184.43 -0.53 -12.57 16 3 C 0.25 6.14 5.13 -5.19 -0.03 6.11 16 4 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.57 11.85 7.64 -12.76 -0.10 11.76 16 13 O -0.52 -12.75 16.34 5.23 0.09 -12.67 16 14 C -0.21 -3.41 6.13 -37.59 -0.23 -3.64 16 15 C -0.04 -0.66 9.40 -40.42 -0.38 -1.04 16 16 C -0.12 -1.76 5.86 -107.05 -0.63 -2.38 16 17 C -0.14 -1.76 6.41 -37.56 -0.24 -2.01 16 18 S 0.23 2.77 17.57 -107.50 -1.89 0.88 16 19 C -0.05 -0.65 5.76 -106.62 -0.61 -1.27 16 20 C -0.10 -0.85 9.68 -39.57 -0.38 -1.24 16 21 C -0.11 -0.77 9.96 -39.91 -0.40 -1.17 16 22 C -0.10 -0.69 9.95 -39.94 -0.40 -1.09 16 23 C -0.09 -0.79 9.98 -39.49 -0.39 -1.18 16 24 C 0.14 1.71 6.60 -84.90 -0.56 1.15 16 25 N -0.48 -6.49 10.22 -7.60 -0.08 -6.57 16 26 C 0.27 3.74 7.34 -16.59 -0.12 3.62 16 27 Cl -0.02 -0.21 28.60 -51.86 -1.48 -1.69 16 28 H 0.06 0.71 7.71 -51.93 -0.40 0.31 16 29 H 0.10 1.46 8.02 -51.93 -0.42 1.04 16 30 H 0.06 0.82 4.63 -22.95 -0.11 0.71 16 31 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.16 2.50 7.80 -52.49 -0.41 2.09 16 35 H 0.13 0.95 7.79 -52.49 -0.41 0.54 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -32.76 355.05 -10.54 -43.30 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -3.36 Total: -3.27 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -4.36 Total: -4.09 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.13 Total: -44.14 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.89 Total: 0.88 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.48 Total: -1.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.76 -10.54 -43.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004938461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.255 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds