Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99588 * 2 1 4 4 C 1.50704 * 109.47162 * 269.99820 * 3 2 1 5 5 H 1.08005 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99662 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00371 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99402 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47598 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47109 * 120.00465 * 8 6 4 11 11 H 1.48509 * 109.47269 * 240.00083 * 8 6 4 12 12 C 1.34772 * 120.00443 * 180.02562 * 2 1 3 13 13 O 1.21653 * 120.00467 * 179.80820 * 12 2 1 14 14 C 1.46902 * 119.99573 * 359.80902 * 12 2 1 15 15 C 1.33942 * 124.73352 * 171.12100 * 14 12 2 16 16 C 1.40040 * 115.61736 * 180.02562 * 15 14 12 17 17 C 1.39772 * 112.55783 * 0.02562 * 16 15 14 18 18 S 1.75552 * 124.73520 * 351.14024 * 14 12 2 19 19 C 1.42025 * 118.55285 * 179.97438 * 17 16 15 20 20 C 1.40004 * 121.17137 * 180.02562 * 19 17 16 21 21 C 1.36438 * 119.62520 * 180.02562 * 20 19 17 22 22 C 1.39098 * 120.75010 * 359.95267 * 21 20 19 23 23 C 1.36345 * 120.98056 * 0.02686 * 22 21 20 24 24 C 1.40288 * 119.77292 * 359.97438 * 23 22 21 25 25 N 1.34199 * 120.89665 * 180.02562 * 24 23 22 26 26 C 1.30338 * 122.33156 * 179.97438 * 25 24 23 27 27 Cl 1.73606 * 119.04136 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.47217 * 263.39882 * 1 2 3 29 29 H 1.09005 * 109.47575 * 23.39635 * 1 2 3 30 30 H 1.09002 * 109.47234 * 143.39893 * 1 2 3 31 31 H 1.08997 * 109.47135 * 30.00313 * 3 2 1 32 32 H 1.09005 * 109.46611 * 150.00423 * 3 2 1 33 33 H 0.96998 * 120.00163 * 180.02562 * 7 6 4 34 34 H 1.07994 * 122.18620 * 0.04476 * 15 14 12 35 35 H 1.07997 * 120.19217 * 359.97438 * 20 19 17 36 36 H 1.07999 * 119.63213 * 179.97438 * 21 20 19 37 37 H 1.07995 * 119.51225 * 180.30079 * 22 21 20 38 38 H 1.07993 * 120.11397 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5548 3.6172 -0.6731 8 14 3.4374 3.4171 -3.4339 9 1 2.8585 2.4178 -4.3673 10 1 2.8004 4.7383 -3.6665 11 1 4.9000 3.5248 -3.6680 12 6 2.1389 -1.1671 -0.0005 13 8 3.3555 -1.1671 -0.0040 14 6 1.4044 -2.4393 0.0031 15 6 1.9642 -3.6442 -0.1669 16 6 1.0830 -4.7320 -0.1293 17 6 -0.2421 -4.3415 0.0828 18 16 -0.3295 -2.5926 0.2305 19 6 -1.2445 -5.3458 0.1429 20 6 -2.5890 -5.0162 0.3524 21 6 -3.5259 -6.0067 0.4051 22 6 -3.1606 -7.3401 0.2520 23 6 -1.8596 -7.6922 0.0463 24 6 -0.8703 -6.6993 -0.0134 25 7 0.4170 -7.0204 -0.2154 26 6 1.3585 -6.1212 -0.2763 27 17 2.9962 -6.6323 -0.5418 28 1 -0.3634 -0.1181 1.0209 29 1 -0.3634 0.9432 -0.4081 30 1 -0.3634 -0.8250 -0.6127 31 1 1.6083 2.0284 0.5139 32 1 3.1499 1.1384 0.5138 33 1 4.0316 4.4431 -0.8503 34 1 3.0256 -3.7686 -0.3224 35 1 -2.8828 -3.9840 0.4725 36 1 -4.5630 -5.7526 0.5672 37 1 -3.9193 -8.1075 0.2924 38 1 -1.5917 -8.7317 -0.0712 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004938461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = 21.479183 kcal Electronic energy + Delta-G solvation = -25825.897370 eV Core-core repulsion = 21977.999947 eV Total energy + Delta-G solvation = -3847.897423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.044 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07361 -40.89314 -39.01270 -37.82151 -36.95218 -36.57095 -34.83824 -33.60372 -31.35716 -30.94140 -29.59988 -27.81024 -26.46705 -25.80862 -24.57741 -23.50926 -22.67288 -20.83552 -19.43858 -19.17863 -18.73404 -18.61218 -17.62742 -17.25002 -16.64502 -16.45031 -16.37709 -16.05174 -15.91279 -15.69896 -15.28425 -14.80556 -14.53343 -14.46273 -14.20046 -14.04994 -13.78043 -13.68053 -13.52861 -13.24098 -12.94634 -12.82978 -12.62424 -12.55264 -12.40284 -12.28264 -12.14900 -12.00620 -11.74389 -11.15400 -11.08302 -10.87829 -10.66231 -10.16974 -9.71520 -9.36263 -9.00927 -8.25129 -6.39411 -1.18172 -0.81833 0.05114 0.32499 0.35821 0.65248 0.75838 1.36654 1.39511 1.50645 1.66141 1.96584 2.14464 2.38644 2.86809 3.05191 3.11826 3.24332 3.40137 3.49562 3.62808 3.85449 4.00888 4.10308 4.23497 4.30859 4.37729 4.40758 4.57655 4.72595 4.75990 4.81449 4.94040 4.97338 5.17367 5.17942 5.29224 5.40808 5.43540 5.72777 5.77219 6.00337 6.43597 6.45119 6.68280 7.08173 7.32143 8.82488 Molecular weight = 360.04amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002745 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.014135 B =10198.584991 C =11414.012452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.597 5.597 3 C 0.260 3.740 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.965 3.035 9 H -0.268 1.268 10 H -0.267 1.267 11 H -0.283 1.283 12 C 0.567 3.433 13 O -0.575 6.575 14 C -0.249 4.249 15 C -0.033 4.033 16 C -0.146 4.146 17 C -0.132 4.132 18 S 0.304 5.696 19 C -0.073 4.073 20 C -0.104 4.104 21 C -0.094 4.094 22 C -0.081 4.081 23 C -0.099 4.099 24 C 0.115 3.885 25 N -0.484 5.484 26 C 0.254 3.746 27 Cl -0.019 7.019 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.247 -21.228 3.133 29.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.327 5.327 3 C 0.139 3.861 4 C -0.584 4.584 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.790 3.210 9 H -0.193 1.193 10 H -0.192 1.192 11 H -0.209 1.209 12 C 0.355 3.645 13 O -0.456 6.456 14 C -0.368 4.368 15 C -0.065 4.065 16 C -0.160 4.160 17 C -0.254 4.254 18 S 0.574 5.426 19 C -0.078 4.078 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.003 4.003 25 N -0.194 5.194 26 C 0.065 3.935 27 Cl 0.010 6.990 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.023 0.977 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.190 0.810 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.511 -20.892 3.336 29.467 hybrid contribution 2.439 0.295 -1.003 2.654 sum -18.072 -20.597 2.333 27.501 Atomic orbital electron populations 1.22213 0.78332 1.04398 1.03646 1.48028 1.08171 1.06288 1.70211 1.18944 0.91449 0.79156 0.96516 1.21692 1.37210 1.06638 0.92852 0.92825 1.25791 0.94768 0.96371 1.01815 1.70034 1.38694 1.14837 1.32879 0.85398 0.77861 0.78475 0.79263 1.19270 1.19200 1.20905 1.17441 0.86611 0.83096 0.77382 1.90775 1.14926 1.87286 1.52632 1.23811 1.00232 0.96811 1.15960 1.20022 1.01545 0.89204 0.95772 1.18381 0.93495 0.93049 1.11032 1.24644 0.95517 1.03290 1.01972 1.84116 0.98903 0.90966 1.68570 1.18211 0.94531 0.91486 1.03592 1.21244 0.89941 1.01968 0.99223 1.21481 1.01361 0.92064 0.96324 1.21458 0.95637 0.97774 0.95184 1.21053 0.91806 0.99046 0.99891 1.18913 0.89238 0.92217 0.99936 1.66940 1.00843 1.36582 1.15069 1.21763 0.88661 0.87270 0.95813 1.98420 1.15008 1.91709 1.93860 0.89067 0.87552 0.90061 0.94264 0.97687 0.92265 0.83355 0.83267 0.81151 0.81019 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.65 8.89 127.77 1.14 2.79 16 2 N -0.60 -25.08 2.86 -855.63 -2.44 -27.53 16 3 C 0.26 13.59 5.13 85.63 0.44 14.03 16 4 C -0.55 -30.75 9.39 25.60 0.24 -30.50 16 5 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.68 5.46 84.65 0.46 1.14 16 7 N -0.92 -54.64 13.29 21.45 0.28 -54.36 16 8 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 C 0.57 24.80 7.64 86.51 0.66 25.46 16 13 O -0.57 -30.72 16.34 -4.20 -0.07 -30.78 16 14 C -0.25 -8.36 6.13 23.56 0.14 -8.22 16 15 C -0.03 -1.06 9.40 21.73 0.20 -0.86 16 16 C -0.15 -4.25 5.86 -21.44 -0.13 -4.37 16 17 C -0.13 -3.29 6.41 23.58 0.15 -3.13 16 18 S 0.30 6.85 17.57 -56.49 -0.99 5.86 16 19 C -0.07 -1.57 5.76 -21.16 -0.12 -1.69 16 20 C -0.10 -1.43 9.68 22.28 0.22 -1.22 16 21 C -0.09 -0.79 9.96 22.06 0.22 -0.57 16 22 C -0.08 -0.69 9.95 22.03 0.22 -0.47 16 23 C -0.10 -1.51 9.98 22.33 0.22 -1.29 16 24 C 0.11 2.61 6.60 40.03 0.26 2.88 16 25 N -0.48 -13.09 10.22 -177.95 -1.82 -14.91 16 26 C 0.25 7.22 7.34 85.95 0.63 7.85 16 27 Cl -0.02 -0.49 28.60 -2.72 -0.08 -0.57 16 28 H 0.09 1.99 7.71 -2.39 -0.02 1.97 16 29 H 0.11 2.92 8.02 -2.38 -0.02 2.90 16 30 H 0.08 1.97 4.63 -20.81 -0.10 1.87 16 31 H 0.04 2.02 8.07 -2.39 -0.02 2.00 16 32 H 0.00 0.30 7.42 -2.38 -0.02 0.28 16 33 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.15 5.07 7.80 -2.91 -0.02 5.05 16 35 H 0.15 1.44 7.79 -2.91 -0.02 1.41 16 36 H 0.17 0.19 8.06 -2.91 -0.02 0.17 16 37 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 38 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -76.68 355.05 2.91 -73.77 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: 1.04 Total: 0.41 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 4.96 Total: 1.83 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -3.98 Total: -96.79 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.07 Total: -30.78 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -0.99 Total: 5.86 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -76.68 2.91 -73.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004938461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.250 kcal (2) G-P(sol) polarization free energy of solvation -76.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds