Wall clock time and date at job start Tue Mar 31 2020 06:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46837 * 2 1 4 4 C 1.53004 * 109.47255 * 60.00281 * 3 2 1 5 5 C 1.52992 * 109.47421 * 299.99836 * 3 2 1 6 6 N 1.46505 * 109.46664 * 179.97438 * 3 2 1 7 7 C 1.34776 * 119.99867 * 179.97438 * 6 3 2 8 8 O 1.21581 * 120.00162 * 0.02562 * 7 6 3 9 9 C 1.47619 * 120.00250 * 179.97438 * 7 6 3 10 10 C 1.39780 * 120.04156 * 0.02562 * 9 7 6 11 11 C 1.37835 * 120.13612 * 179.97438 * 10 9 7 12 12 C 1.38709 * 120.07311 * 0.02562 * 11 10 9 13 13 C 1.39659 * 120.12213 * 0.21729 * 12 11 10 14 14 C 1.38354 * 120.09455 * 359.52325 * 13 12 11 15 15 N 1.40012 * 119.35221 * 180.22741 * 13 12 11 16 16 C 1.37099 * 120.50126 * 195.25864 * 15 13 12 17 17 H 1.08001 * 120.00274 * 40.21890 * 16 15 13 18 18 C 1.38877 * 119.99858 * 220.21199 * 16 15 13 19 19 N 1.31433 * 120.00134 * 24.10092 * 18 16 15 20 20 Si 1.86795 * 120.00120 * 203.82223 * 18 16 15 21 21 H 1.48503 * 109.47180 * 180.27892 * 20 18 16 22 22 H 1.48504 * 109.47128 * 300.27855 * 20 18 16 23 23 H 1.48501 * 109.47384 * 60.27551 * 20 18 16 24 24 C 1.35075 * 118.99333 * 14.98210 * 15 13 12 25 25 O 1.21287 * 120.13014 * 181.92619 * 24 15 13 26 26 C 1.50759 * 119.74040 * 1.90993 * 24 15 13 27 27 C 1.53000 * 109.44406 * 88.70331 * 26 24 15 28 28 C 1.52993 * 109.44079 * 208.60095 * 26 24 15 29 29 O 1.35806 * 120.51419 * 179.97438 * 12 11 10 30 30 H 1.08997 * 109.46937 * 300.00255 * 1 2 3 31 31 H 1.08999 * 109.46829 * 59.99617 * 1 2 3 32 32 H 1.08999 * 109.46702 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46937 * 239.99745 * 2 1 3 34 34 H 1.08997 * 109.47000 * 119.99870 * 2 1 3 35 35 H 1.09001 * 109.47102 * 179.97438 * 4 3 2 36 36 H 1.08994 * 109.46784 * 299.99550 * 4 3 2 37 37 H 1.08998 * 109.47061 * 59.99966 * 4 3 2 38 38 H 1.09004 * 109.47488 * 299.99927 * 5 3 2 39 39 H 1.09003 * 109.47017 * 60.00302 * 5 3 2 40 40 H 1.09001 * 109.47227 * 180.02562 * 5 3 2 41 41 H 0.96996 * 120.00342 * 0.02562 * 6 3 2 42 42 H 1.07991 * 119.93069 * 359.97438 * 10 9 7 43 43 H 1.07994 * 119.96085 * 179.97438 * 11 10 9 44 44 H 1.08001 * 120.18434 * 180.20861 * 14 13 12 45 45 H 0.97000 * 119.99599 * 5.61803 * 19 18 16 46 46 H 1.09002 * 109.46920 * 59.99926 * 27 26 24 47 47 H 1.08998 * 109.46759 * 180.02562 * 27 26 24 48 48 H 1.08999 * 109.46996 * 300.00467 * 27 26 24 49 49 H 1.09007 * 109.47475 * 59.99747 * 28 26 24 50 50 H 1.09003 * 109.47338 * 179.97438 * 28 26 24 51 51 H 1.09001 * 109.47279 * 299.99640 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5301 2.1637 -1.2492 6 7 3.5051 1.4424 0.0006 7 6 4.1789 2.6096 0.0002 8 8 3.5711 3.6626 -0.0002 9 6 5.6551 2.6097 0.0014 10 6 6.3550 1.3997 0.0024 11 6 7.7333 1.3975 0.0030 12 6 8.4303 2.5967 0.0031 13 6 7.7381 3.8097 0.0072 14 6 6.3546 3.8189 0.0012 15 7 8.4579 5.0106 0.0024 16 6 7.8400 6.1934 0.3170 17 1 7.1210 6.2297 1.1220 18 6 8.1389 7.3449 -0.3995 19 7 8.6091 7.2539 -1.6235 20 14 7.8653 9.0233 0.3734 21 1 8.2528 10.0824 -0.5929 22 1 6.4315 9.1773 0.7279 23 1 8.6941 9.1447 1.5996 24 6 9.7714 4.9854 -0.3113 25 8 10.4227 6.0084 -0.2878 26 6 10.4249 3.6808 -0.6903 27 6 10.2911 3.4635 -2.1989 28 6 11.9068 3.7248 -0.3123 29 8 9.7884 2.6050 0.0042 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.8937 3.1913 1.2495 36 1 0.4401 2.1637 1.2493 37 1 1.8934 1.6499 2.1392 38 1 1.8934 1.6500 -2.1392 39 1 0.4400 2.1637 -1.2492 40 1 1.8938 3.1913 -1.2494 41 1 3.9901 0.6024 0.0006 42 1 5.8146 0.4647 0.0027 43 1 8.2711 0.4610 0.0042 44 1 5.8179 4.7561 0.0010 45 1 8.6708 6.3879 -2.0561 46 1 10.7789 4.2819 -2.7285 47 1 10.7631 2.5201 -2.4733 48 1 9.2357 3.4337 -2.4695 49 1 12.0032 3.8811 0.7622 50 1 12.3797 2.7815 -0.5857 51 1 12.3932 4.5429 -0.8435 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004965833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:49 Heat of formation + Delta-G solvation = -77.460023 kcal Electronic energy + Delta-G solvation = -33879.593592 eV Core-core repulsion = 29551.443090 eV Total energy + Delta-G solvation = -4328.150501 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.07371 -40.14811 -38.05871 -37.43183 -36.65597 -34.91966 -32.97751 -32.70064 -32.00423 -30.21142 -29.59902 -28.41320 -27.33451 -27.17132 -25.65545 -24.85319 -23.38080 -22.63541 -21.95594 -20.74789 -19.45123 -18.62468 -18.58706 -18.18386 -16.70892 -16.23463 -15.96295 -15.39835 -15.03186 -14.93093 -14.72334 -14.66794 -14.35522 -14.07938 -13.82723 -13.79324 -13.53480 -13.38842 -13.24023 -12.92582 -12.65778 -12.54140 -12.45103 -12.22221 -12.09631 -11.98762 -11.89896 -11.80088 -11.69418 -11.61332 -11.44007 -11.33225 -10.97931 -10.90474 -10.85110 -10.68665 -10.50567 -10.21600 -10.09165 -9.77379 -9.44631 -9.02715 -8.87260 -8.48813 -8.12969 -7.23200 -6.70321 -4.22509 1.16544 1.71080 2.92358 3.18331 3.31841 3.39269 3.47751 3.56574 3.78356 3.97286 4.29621 4.42636 4.48785 4.68562 4.76455 4.87792 4.97516 5.04448 5.09104 5.15719 5.16509 5.20518 5.27306 5.35761 5.40557 5.55318 5.63655 5.65659 5.67011 5.75455 5.78810 5.83066 5.84390 5.91560 5.92530 5.93192 5.99087 6.06624 6.21965 6.26578 6.35334 6.36876 6.38779 6.42780 6.62709 6.69877 6.74902 7.06364 7.40490 7.66134 7.75026 8.00755 8.34831 8.44719 8.61708 9.13772 9.46246 10.55739 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.003228 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.818421 B = 8672.564485 C =10532.372749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.174 3.826 4 C -0.166 4.166 5 C -0.167 4.167 6 N -0.726 5.726 7 C 0.568 3.432 8 O -0.530 6.530 9 C -0.138 4.138 10 C -0.116 4.116 11 C -0.120 4.120 12 C 0.077 3.923 13 C 0.107 3.893 14 C -0.063 4.063 15 N -0.385 5.385 16 C -0.444 4.444 17 H 0.089 0.911 18 C 0.044 3.956 19 N -0.830 5.830 20 Si 1.080 2.920 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.443 3.557 25 O -0.493 6.493 26 C 0.102 3.898 27 C -0.166 4.166 28 C -0.121 4.121 29 O -0.305 6.305 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.397 0.603 42 H 0.122 0.878 43 H 0.131 0.869 44 H 0.149 0.851 45 H 0.270 0.730 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 -16.767 0.913 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.089 3.911 4 C -0.224 4.224 5 C -0.224 4.224 6 N -0.379 5.379 7 C 0.357 3.643 8 O -0.407 6.407 9 C -0.141 4.141 10 C -0.137 4.137 11 C -0.139 4.139 12 C 0.029 3.971 13 C 0.007 3.993 14 C -0.085 4.085 15 N -0.095 5.095 16 C -0.569 4.569 17 H 0.107 0.893 18 C -0.170 4.170 19 N -0.458 5.458 20 Si 0.905 3.095 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.207 1.207 24 C 0.231 3.769 25 O -0.368 6.368 26 C 0.060 3.940 27 C -0.223 4.223 28 C -0.178 4.178 29 O -0.220 6.220 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.232 0.768 42 H 0.140 0.860 43 H 0.149 0.851 44 H 0.167 0.833 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.334 -13.827 0.722 16.160 hybrid contribution -0.068 -2.141 0.149 2.147 sum -8.402 -15.968 0.871 18.064 Atomic orbital electron populations 1.21853 0.94684 1.01822 1.02605 1.21770 0.97029 0.95097 1.02452 1.20288 0.79282 0.95309 0.96240 1.22286 1.00919 1.02963 0.96255 1.22287 1.00922 1.02979 0.96256 1.46052 1.06491 1.08589 1.76811 1.18212 0.87178 0.83470 0.75425 1.90716 1.69635 1.31292 1.49047 1.19583 0.92135 0.93884 1.08547 1.20683 0.93193 0.96318 1.03479 1.20159 0.93269 0.95620 1.04856 1.18812 0.82551 0.92549 1.03215 1.18741 0.92532 0.86577 1.01441 1.20833 0.91411 0.98388 0.97864 1.41557 1.06163 1.04957 1.56790 1.20139 1.30684 0.85336 1.20695 0.89334 1.26409 0.93194 1.03699 0.93702 1.70632 1.35863 1.28684 1.10660 0.83365 0.76530 0.73785 0.75826 1.20253 1.20797 1.20727 1.20957 0.82419 0.90486 0.82993 1.90650 1.61780 1.34066 1.50277 1.22127 0.94625 0.84254 0.92971 1.22300 1.03215 1.03105 0.93722 1.21603 0.90300 1.02802 1.03133 1.86085 1.16017 1.48326 1.71562 0.92053 0.92055 0.92546 0.91401 0.91400 0.90098 0.91812 0.92839 0.92838 0.91805 0.90088 0.76771 0.86027 0.85081 0.83314 0.91901 0.90315 0.90908 0.92023 0.91533 0.91309 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.21 37.16 0.34 -0.66 16 2 C -0.13 -0.94 5.10 -26.73 -0.14 -1.08 16 3 C 0.17 1.84 0.83 -131.82 -0.11 1.73 16 4 C -0.17 -1.88 8.05 37.16 0.30 -1.58 16 5 C -0.17 -1.90 8.05 37.15 0.30 -1.60 16 6 N -0.73 -8.56 5.05 -48.61 -0.25 -8.81 16 7 C 0.57 9.20 7.18 -12.43 -0.09 9.11 16 8 O -0.53 -10.28 12.54 5.29 0.07 -10.21 16 9 C -0.14 -2.36 5.88 -104.95 -0.62 -2.98 16 10 C -0.12 -1.63 9.53 -39.15 -0.37 -2.00 16 11 C -0.12 -1.84 9.98 -39.55 -0.39 -2.23 16 12 C 0.08 1.49 5.85 -38.88 -0.23 1.26 16 13 C 0.11 2.40 6.35 -83.55 -0.53 1.86 16 14 C -0.06 -1.33 8.87 -38.99 -0.35 -1.68 16 15 N -0.39 -9.98 2.55 -58.80 -0.15 -10.13 16 16 C -0.44 -12.34 7.94 -14.96 -0.12 -12.46 16 17 H 0.09 2.43 7.75 -52.49 -0.41 2.02 16 18 C 0.04 1.25 4.22 -17.49 -0.07 1.17 16 19 N -0.83 -24.55 12.29 55.49 0.68 -23.86 16 20 Si 1.08 25.16 29.98 -169.99 -5.10 20.06 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.44 11.14 5.33 -10.82 -0.06 11.08 16 25 O -0.49 -13.91 13.96 5.55 0.08 -13.83 16 26 C 0.10 2.02 1.10 -91.75 -0.10 1.92 16 27 C -0.17 -2.90 8.57 37.16 0.32 -2.58 16 28 C -0.12 -2.02 8.42 37.15 0.31 -1.71 16 29 O -0.30 -5.90 9.81 -19.13 -0.19 -6.09 16 30 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.18 6.16 -51.93 -0.32 0.86 16 36 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 40 H 0.08 1.19 6.16 -51.93 -0.32 0.87 16 41 H 0.40 3.61 6.49 -40.82 -0.26 3.35 16 42 H 0.12 1.19 6.38 -52.49 -0.33 0.85 16 43 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.15 3.52 6.69 -52.49 -0.35 3.17 16 45 H 0.27 8.08 7.35 -40.82 -0.30 7.78 16 46 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.06 1.16 7.81 -51.93 -0.41 0.75 16 49 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.09 1.46 7.86 -51.93 -0.41 1.06 16 LS Contribution 397.67 15.07 5.99 5.99 Total: -1.00 -33.53 397.67 -7.93 -41.47 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.47 Total: 7.84 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.60 Total: -2.43 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.29 Total: -42.81 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.04 Total: -30.13 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.10 Total: 20.06 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.53 -7.93 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004965833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.993 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds