Wall clock time and date at job start Tue Mar 31 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31492 * 1 3 3 Si 1.86801 * 120.00319 * 2 1 4 4 H 1.48501 * 109.46801 * 269.99832 * 3 2 1 5 5 H 1.48503 * 109.46949 * 29.99334 * 3 2 1 6 6 H 1.48493 * 109.47295 * 149.99800 * 3 2 1 7 7 C 1.38754 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99563 * 359.97438 * 7 2 1 9 9 O 1.34773 * 119.99752 * 180.02562 * 7 2 1 10 10 C 1.35567 * 116.99491 * 185.05537 * 9 7 2 11 11 C 1.39152 * 119.92456 * 354.44695 * 10 9 7 12 12 C 1.37644 * 120.07488 * 180.29435 * 11 10 9 13 13 C 1.39803 * 119.92337 * 359.48415 * 12 11 10 14 14 C 1.47674 * 120.07825 * 180.24952 * 13 12 11 15 15 O 1.21789 * 120.00160 * 180.27302 * 14 13 12 16 16 C 1.41820 * 119.99821 * 0.26703 * 14 13 12 17 17 C 1.35226 * 119.99849 * 180.02562 * 16 14 13 18 18 C 1.46900 * 119.99859 * 180.02562 * 17 16 14 19 19 C 1.40038 * 120.11636 * 359.71617 * 18 17 16 20 20 C 1.37637 * 119.87660 * 179.76923 * 19 18 17 21 21 C 1.39046 * 120.11956 * 0.51380 * 20 19 18 22 22 O 1.35726 * 119.88268 * 179.76628 * 21 20 19 23 23 C 1.42904 * 117.00136 * 359.97438 * 22 21 20 24 24 F 1.39905 * 109.46913 * 300.00631 * 23 22 21 25 25 F 1.39898 * 109.46935 * 60.00161 * 23 22 21 26 26 C 1.39046 * 120.23961 * 359.74037 * 21 20 19 27 27 C 1.37638 * 120.11792 * 0.02562 * 26 21 20 28 28 C 1.39802 * 119.84612 * 0.51743 * 13 12 11 29 29 C 1.37641 * 119.91908 * 359.72832 * 28 13 12 30 30 H 0.96995 * 119.99410 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.96676 * 0.02562 * 11 10 9 32 32 H 1.08004 * 120.03594 * 179.70328 * 12 11 10 33 33 H 1.08007 * 120.00160 * 0.02562 * 16 14 13 34 34 H 1.07997 * 120.00528 * 359.97438 * 17 16 14 35 35 H 1.07997 * 120.06083 * 0.02753 * 19 18 17 36 36 H 1.08004 * 119.94291 * 180.25790 * 20 19 18 37 37 H 1.08999 * 109.47280 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.94619 * 179.97438 * 26 21 20 39 39 H 1.07992 * 120.06481 * 180.02562 * 27 26 21 40 40 H 1.07994 * 120.03616 * 179.71346 * 28 13 12 41 41 H 1.08003 * 119.95792 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0463 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4401 0.7000 7 6 2.0087 -1.2017 0.0005 8 1 1.4686 -2.1369 0.0014 9 8 3.3564 -1.2016 0.0011 10 6 3.9718 -2.4049 -0.1049 11 6 3.2174 -3.5741 -0.0912 12 6 3.8396 -4.7977 -0.1924 13 6 5.2301 -4.8646 -0.3200 14 6 5.9007 -6.1753 -0.4344 15 8 7.1126 -6.2321 -0.5405 16 6 5.1334 -7.3679 -0.4207 17 6 5.7474 -8.5682 -0.5250 18 6 4.9526 -9.8035 -0.5113 19 6 3.5594 -9.7412 -0.3844 20 6 2.8190 -10.9015 -0.3769 21 6 3.4529 -12.1343 -0.4843 22 8 2.7186 -13.2757 -0.4717 23 6 1.3022 -13.1345 -0.3448 24 9 1.0044 -12.4824 0.8566 25 9 0.8106 -12.3831 -1.4176 26 6 4.8365 -12.2022 -0.6052 27 6 5.5860 -11.0479 -0.6186 28 6 5.9850 -3.6879 -0.3334 29 6 5.3567 -2.4679 -0.2266 30 1 -0.4849 0.8401 -0.0004 31 1 2.1428 -3.5216 0.0034 32 1 3.2538 -5.7049 -0.1769 33 1 4.0586 -7.3175 -0.3269 34 1 6.8221 -8.6187 -0.6191 35 1 3.0664 -8.7843 -0.2968 36 1 1.7441 -10.8545 -0.2833 37 1 0.8371 -14.1203 -0.3478 38 1 5.3240 -13.1623 -0.6879 39 1 6.6605 -11.1015 -0.7129 40 1 7.0598 -3.7362 -0.4271 41 1 5.9392 -1.5586 -0.2364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005155872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:49 Heat of formation + Delta-G solvation = -134.856633 kcal Electronic energy + Delta-G solvation = -29291.702633 eV Core-core repulsion = 24546.016772 eV Total energy + Delta-G solvation = -4745.685861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.101 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.83995 -47.82411 -40.46019 -39.75212 -38.85048 -38.02460 -36.36883 -33.87891 -32.63431 -31.53488 -30.81868 -30.00018 -29.19112 -26.74501 -25.75338 -24.37394 -23.42275 -22.53080 -22.07565 -20.68179 -19.54328 -18.95204 -18.48511 -18.40017 -18.06121 -17.71285 -16.88602 -16.34343 -15.78325 -15.37150 -15.12474 -14.98658 -14.67450 -14.44953 -14.41248 -14.27650 -14.14048 -14.02156 -13.95307 -13.87044 -13.81182 -13.31852 -13.21695 -12.87412 -12.68376 -12.47561 -12.45264 -12.10313 -11.94397 -11.80592 -11.43404 -11.18538 -10.88987 -10.81383 -10.30615 -10.21576 -9.57277 -9.48237 -9.42622 -9.05914 -8.46136 -8.27525 -7.55447 -6.62639 -4.26922 0.14151 0.93995 1.28713 2.00939 2.02936 2.06735 2.97775 3.10413 3.15128 3.26209 3.29628 3.58595 3.77395 4.07881 4.12355 4.25391 4.31904 4.41123 4.45819 4.62560 4.75442 4.83678 4.88511 4.92833 5.02004 5.15232 5.39739 5.57026 5.60133 5.65845 5.66565 5.84408 5.85720 5.95431 6.06178 6.08673 6.28199 6.37905 6.43269 6.60713 6.65006 6.84290 7.03210 7.07196 7.40970 7.60519 7.82118 7.99556 8.70622 9.30695 10.43426 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.001849 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.034580 B =15139.302174 C =17272.398162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.393 4.393 8 H 0.112 0.888 9 O -0.199 6.199 10 C 0.183 3.817 11 C -0.236 4.236 12 C -0.025 4.025 13 C -0.261 4.261 14 C 0.429 3.571 15 O -0.490 6.490 16 C -0.220 4.220 17 C -0.026 4.026 18 C -0.096 4.096 19 C -0.061 4.061 20 C -0.191 4.191 21 C 0.111 3.889 22 O -0.321 6.321 23 C 0.411 3.589 24 F -0.197 7.197 25 F -0.197 7.197 26 C -0.137 4.137 27 C -0.063 4.063 28 C -0.016 4.016 29 C -0.206 4.206 30 H 0.284 0.716 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.183 0.817 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 -26.650 -0.911 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.129 0.871 9 O -0.102 6.102 10 C 0.128 3.872 11 C -0.255 4.255 12 C -0.043 4.043 13 C -0.263 4.263 14 C 0.316 3.684 15 O -0.374 6.374 16 C -0.238 4.238 17 C -0.045 4.045 18 C -0.096 4.096 19 C -0.079 4.079 20 C -0.209 4.209 21 C 0.068 3.932 22 O -0.238 6.238 23 C 0.321 3.679 24 F -0.179 7.179 25 F -0.178 7.178 26 C -0.156 4.156 27 C -0.081 4.081 28 C -0.034 4.034 29 C -0.225 4.225 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.199 0.801 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.921 -26.431 -0.943 26.902 hybrid contribution -0.494 0.938 0.058 1.062 sum 4.427 -25.493 -0.885 25.889 Atomic orbital electron populations 1.69606 1.05725 1.29052 1.45713 1.24551 0.95085 0.99138 0.95095 0.86160 0.80419 0.81037 0.79263 1.19579 1.20477 1.18139 1.20891 0.76595 0.96951 1.52315 0.87122 1.83510 1.23024 1.26248 1.77408 1.19400 0.91772 0.85332 0.90745 1.21218 1.01350 0.91656 1.11313 1.21004 0.92970 0.96993 0.93382 1.19827 0.94142 0.93966 1.18380 1.19042 0.87991 0.88881 0.72456 1.90586 1.16320 1.90139 1.40337 1.22753 1.01843 0.93885 1.05348 1.22496 0.99881 0.90650 0.91437 1.19124 0.93193 0.93347 1.03925 1.21326 0.92927 0.98402 0.95260 1.21510 1.01167 0.91763 1.06499 1.19094 0.91494 0.84329 0.98300 1.86578 1.17982 1.31483 1.87782 1.23388 0.79874 0.92670 0.71967 1.93119 1.92843 1.84486 1.47404 1.93118 1.87628 1.80033 1.57057 1.20354 0.89945 0.99822 1.05465 1.21232 1.00125 0.90498 0.96215 1.20808 0.99145 0.90636 0.92820 1.20186 0.91785 0.98087 1.12485 0.90605 0.84396 0.86506 0.85155 0.84617 0.84452 0.84517 0.80074 0.84474 0.84281 0.85716 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.75 13.96 55.48 0.77 -22.97 16 2 C 0.07 1.78 5.50 -17.51 -0.10 1.69 16 3 Si 0.91 20.61 28.62 -169.99 -4.86 15.75 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.39 -10.47 9.94 30.92 0.31 -10.16 16 8 H 0.11 2.98 5.42 -52.49 -0.28 2.70 16 9 O -0.20 -5.00 8.57 0.77 0.01 -4.99 16 10 C 0.18 4.03 6.66 -38.90 -0.26 3.77 16 11 C -0.24 -4.79 9.15 -39.46 -0.36 -5.15 16 12 C -0.03 -0.43 9.42 -39.21 -0.37 -0.80 16 13 C -0.26 -4.57 5.88 -104.87 -0.62 -5.19 16 14 C 0.43 6.92 6.90 -34.36 -0.24 6.68 16 15 O -0.49 -8.86 16.11 5.11 0.08 -8.77 16 16 C -0.22 -2.82 8.73 -39.29 -0.34 -3.16 16 17 C -0.03 -0.29 9.42 -37.15 -0.35 -0.64 16 18 C -0.10 -0.96 5.87 -105.04 -0.62 -1.58 16 19 C -0.06 -0.62 9.40 -39.13 -0.37 -0.98 16 20 C -0.19 -1.88 8.23 -39.50 -0.32 -2.20 16 21 C 0.11 1.03 6.50 -38.98 -0.25 0.78 16 22 O -0.32 -2.48 10.42 -18.88 -0.20 -2.68 16 23 C 0.41 2.26 5.98 101.05 0.60 2.86 16 24 F -0.20 -1.48 15.57 2.25 0.04 -1.45 16 25 F -0.20 -1.49 15.57 2.25 0.04 -1.45 16 26 C -0.14 -1.13 9.97 -39.50 -0.39 -1.52 16 27 C -0.06 -0.52 9.79 -39.12 -0.38 -0.91 16 28 C -0.02 -0.28 9.59 -39.22 -0.38 -0.66 16 29 C -0.21 -4.02 9.97 -39.46 -0.39 -4.41 16 30 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.14 2.88 5.62 -52.49 -0.29 2.58 16 32 H 0.12 1.60 6.19 -52.48 -0.32 1.28 16 33 H 0.13 1.44 4.23 -52.48 -0.22 1.22 16 34 H 0.14 1.48 7.45 -52.49 -0.39 1.09 16 35 H 0.14 1.24 6.16 -52.49 -0.32 0.91 16 36 H 0.14 1.28 5.07 -52.48 -0.27 1.02 16 37 H 0.18 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.12 2.07 7.64 -52.49 -0.40 1.67 16 41 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -31.19 365.42 -6.78 -37.97 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.33 Total: 4.67 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -4.83 Total: -21.58 kcal Atomic # 7 Polarization: -23.75 SS G_CDS: 0.77 Total: -22.97 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.11 Total: -16.44 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.07 Total: -2.90 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.86 Total: 15.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.19 -6.78 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005155872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.885 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds