Wall clock time and date at job start Tue Mar 31 2020 05:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38291 * 119.96924 * 2 1 4 4 C 1.38281 * 120.14117 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.96010 * 179.97438 * 4 3 2 6 6 C 1.38102 * 120.07200 * 359.96376 * 4 3 2 7 7 C 1.38874 * 119.93101 * 0.02562 * 6 4 3 8 8 N 1.39925 * 120.06873 * 180.02562 * 7 6 4 9 9 C 1.46501 * 120.00210 * 292.52723 * 8 7 6 10 10 C 1.50693 * 109.47592 * 270.00408 * 9 8 7 11 11 H 1.08004 * 119.99822 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00458 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99338 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99967 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47480 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46701 * 120.00265 * 14 12 10 17 17 H 1.48500 * 109.47058 * 239.99968 * 14 12 10 18 18 C 1.34781 * 119.99842 * 112.53329 * 8 7 6 19 19 O 1.21288 * 119.99714 * 185.20433 * 18 8 7 20 20 C 1.50693 * 120.00105 * 5.20600 * 18 8 7 21 21 S 1.81003 * 109.47243 * 184.03818 * 20 18 8 22 22 C 1.76206 * 99.99783 * 179.97438 * 21 20 18 23 23 N 1.31258 * 125.80489 * 0.03070 * 22 21 20 24 24 C 1.34366 * 109.30933 * 179.97438 * 23 22 21 25 25 C 1.34394 * 108.33879 * 0.02562 * 24 23 22 26 26 N 1.36110 * 125.79681 * 179.71232 * 22 21 20 27 27 C 1.46500 * 126.50556 * 0.03087 * 26 22 21 28 28 C 1.38115 * 119.96170 * 180.23830 * 2 1 3 29 29 H 1.08999 * 109.47628 * 89.99298 * 1 2 3 30 30 H 1.08997 * 109.47456 * 210.00128 * 1 2 3 31 31 H 1.09010 * 109.46769 * 329.99608 * 1 2 3 32 32 H 1.07995 * 119.92238 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.47325 * 269.98148 * 5 4 3 34 34 H 1.08998 * 109.47424 * 29.97944 * 5 4 3 35 35 H 1.09000 * 109.46910 * 149.97839 * 5 4 3 36 36 H 1.08003 * 120.03535 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.46794 * 30.00574 * 9 8 7 38 38 H 1.09004 * 109.47074 * 150.00247 * 9 8 7 39 39 H 0.97002 * 119.99328 * 180.02562 * 13 12 10 40 40 H 1.09006 * 109.47487 * 64.03946 * 20 18 8 41 41 H 1.09005 * 109.47044 * 304.03768 * 20 18 8 42 42 H 1.07997 * 125.83114 * 180.02562 * 24 23 22 43 43 H 1.07993 * 126.51656 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47158 * 89.99543 * 27 26 22 45 45 H 1.08995 * 109.47151 * 210.00026 * 27 26 22 46 46 H 1.08998 * 109.46866 * 329.99589 * 27 26 22 47 47 H 1.07999 * 120.04097 * 0.04399 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5806 1.2022 0.0005 5 6 4.3292 2.5100 -0.0001 6 6 4.2762 0.0091 0.0018 7 6 3.5855 -1.1957 0.0021 8 7 4.2873 -2.4062 0.0039 9 6 5.0766 -2.7971 -1.1668 10 6 4.2127 -3.5898 -2.1133 11 1 3.1790 -3.7835 -1.8674 12 6 4.7417 -4.0678 -3.2935 13 7 6.0005 -3.8324 -3.5927 14 14 3.6708 -5.0511 -4.4664 15 1 2.3032 -5.1761 -3.9015 16 1 3.6030 -4.3548 -5.7764 17 1 4.2548 -6.4034 -4.6543 18 6 4.2371 -3.2126 1.0827 19 8 4.9190 -4.2148 1.1228 20 6 3.3338 -2.8690 2.2389 21 16 3.5771 -4.0690 3.5719 22 6 2.4329 -3.4449 4.7579 23 7 1.6668 -2.3902 4.6046 24 6 0.9257 -2.2148 5.7116 25 6 1.2354 -3.1871 6.5863 26 7 2.1891 -3.9783 5.9861 27 6 2.8239 -5.1664 6.5621 28 6 2.1967 -1.1966 -0.0050 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6560 2.1322 -0.0004 33 1 4.5104 2.8245 -1.0279 34 1 3.7370 3.2680 0.5127 35 1 5.2817 2.3836 0.5146 36 1 5.3562 0.0130 0.0018 37 1 5.4442 -1.9038 -1.6718 38 1 5.9214 -3.4078 -0.8480 39 1 6.3725 -4.1684 -4.4231 40 1 2.2951 -2.8975 1.9095 41 1 3.5725 -1.8693 2.6019 42 1 0.2044 -1.4270 5.8713 43 1 0.8126 -3.3247 7.5704 44 1 3.7201 -4.8710 7.1077 45 1 2.1282 -5.6557 7.2437 46 1 3.0957 -5.8563 5.7632 47 1 1.6568 -2.1319 -0.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005358674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:27 Heat of formation + Delta-G solvation = 53.751865 kcal Electronic energy + Delta-G solvation = -29434.023849 eV Core-core repulsion = 25516.201561 eV Total energy + Delta-G solvation = -3917.822288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82661 -40.03989 -38.43292 -35.20157 -34.13035 -33.33922 -32.82184 -30.34587 -30.15788 -29.48161 -27.16881 -27.14439 -26.71823 -26.44269 -22.93418 -22.34281 -21.75660 -21.38113 -20.46702 -18.73251 -17.85915 -16.64419 -16.55422 -16.17776 -15.95365 -15.85646 -15.46565 -15.32423 -14.61249 -14.45032 -14.18096 -13.81964 -13.77603 -13.63612 -13.26170 -13.23928 -13.06910 -12.91027 -12.82701 -12.73315 -12.65273 -12.38877 -12.04895 -11.82249 -11.48508 -11.32749 -11.17267 -10.95978 -10.79906 -10.67819 -10.49174 -10.20299 -10.14614 -9.78992 -9.74081 -9.46641 -9.39934 -8.54194 -8.45143 -8.27565 -7.71168 -7.36407 -6.08172 -4.12730 1.20823 1.59712 1.65317 1.80474 2.16403 2.76908 2.98430 3.10528 3.29178 3.36467 3.40935 3.73058 3.97850 4.42556 4.48792 4.65380 4.78649 4.87182 4.96774 5.05491 5.13037 5.19451 5.27335 5.29044 5.39999 5.45180 5.48689 5.50010 5.59479 5.68701 5.71123 5.77891 5.81024 5.97319 5.99791 6.01004 6.23276 6.39493 6.59006 6.70394 6.77412 6.78915 6.86952 6.95298 7.22333 7.31417 7.42296 7.81198 7.87130 8.14931 8.21646 8.70493 8.92009 9.51869 11.00292 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.007901 B = 0.003670 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3542.854154 B = 7627.849624 C = 9672.229261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 C -0.131 4.131 4 C -0.074 4.074 5 C -0.111 4.111 6 C -0.127 4.127 7 C 0.165 3.835 8 N -0.551 5.551 9 C 0.248 3.752 10 C -0.527 4.527 11 H 0.059 0.941 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.899 3.101 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.532 3.468 19 O -0.517 6.517 20 C -0.129 4.129 21 S 0.048 5.952 22 C 0.180 3.820 23 N -0.489 5.489 24 C -0.018 4.018 25 C -0.056 4.056 26 N -0.451 5.451 27 C 0.071 3.929 28 C -0.125 4.125 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.264 0.736 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.171 0.829 43 H 0.176 0.824 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 7.342 18.297 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.071 4.071 3 C -0.149 4.149 4 C -0.075 4.075 5 C -0.167 4.167 6 C -0.147 4.147 7 C 0.073 3.927 8 N -0.279 5.279 9 C 0.130 3.870 10 C -0.566 4.566 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.208 1.208 18 C 0.318 3.682 19 O -0.393 6.393 20 C -0.281 4.281 21 S 0.277 5.723 22 C -0.190 4.190 23 N -0.212 5.212 24 C -0.168 4.168 25 C -0.191 4.191 26 N -0.136 5.136 27 C -0.071 4.071 28 C -0.145 4.145 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.188 0.812 43 H 0.193 0.807 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.987 6.147 17.558 20.245 hybrid contribution -1.518 0.065 -0.075 1.521 sum -9.505 6.212 17.484 20.847 Atomic orbital electron populations 1.20755 0.91307 1.02519 1.02171 1.19673 0.95791 0.92589 0.99082 1.20788 0.93348 0.97225 1.03527 1.19666 0.93661 0.94714 0.99446 1.20756 0.99799 0.93908 1.02280 1.21098 1.00112 0.90988 1.02497 1.17650 0.90525 0.85955 0.98570 1.45818 1.48387 1.16947 1.16737 1.19507 0.91198 0.96438 0.79809 1.21397 0.97517 1.34187 1.03494 0.92249 1.24900 0.95105 0.96067 0.97809 1.69938 1.12730 1.45869 1.24625 0.86427 0.80572 0.79838 0.80545 1.19719 1.20896 1.20794 1.19434 0.82640 0.83597 0.82564 1.90719 1.43073 1.25572 1.79926 1.23755 1.05431 1.02925 0.96015 1.85973 1.43920 1.35758 1.06699 1.25714 1.05317 0.97028 0.90913 1.70831 1.09233 1.15185 1.25919 1.22296 1.02788 1.00929 0.90816 1.22779 0.98368 0.96580 1.01343 1.45434 1.32005 1.23189 1.13011 1.22101 0.98839 0.85753 1.00454 1.21173 0.93148 0.98004 1.02135 0.91267 0.91586 0.91769 0.86417 0.91189 0.91793 0.91637 0.85808 0.94405 0.93115 0.92680 0.86119 0.86486 0.81195 0.80722 0.90198 0.89365 0.89028 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 36.00 0.36 -0.92 16 2 C -0.07 -1.03 5.88 -104.65 -0.62 -1.64 16 3 C -0.13 -1.77 9.35 -39.55 -0.37 -2.14 16 4 C -0.07 -1.06 5.88 -104.66 -0.62 -1.68 16 5 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 6 C -0.13 -2.15 9.32 -39.40 -0.37 -2.52 16 7 C 0.16 3.11 4.45 -83.69 -0.37 2.74 16 8 N -0.55 -12.07 2.51 -114.74 -0.29 -12.36 16 9 C 0.25 6.50 5.15 -5.20 -0.03 6.47 16 10 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 11 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 12 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 13 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 14 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 C 0.53 11.34 7.59 -10.99 -0.08 11.26 16 19 O -0.52 -12.71 15.42 5.55 0.09 -12.62 16 20 C -0.13 -2.23 4.21 36.00 0.15 -2.07 16 21 S 0.05 0.75 20.77 -107.50 -2.23 -1.48 16 22 C 0.18 2.63 7.96 -88.76 -0.71 1.92 16 23 N -0.49 -7.45 10.60 -13.45 -0.14 -7.59 16 24 C -0.02 -0.22 11.84 -17.80 -0.21 -0.43 16 25 C -0.06 -0.56 11.60 -16.28 -0.19 -0.75 16 26 N -0.45 -5.18 3.20 -124.33 -0.40 -5.57 16 27 C 0.07 0.54 11.01 59.85 0.66 1.19 16 28 C -0.12 -2.14 8.09 -39.39 -0.32 -2.46 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.06 0.62 8.09 -51.92 -0.42 0.20 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 37 H 0.04 1.01 7.85 -51.93 -0.41 0.61 16 38 H 0.05 1.47 7.36 -51.93 -0.38 1.09 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.12 2.03 6.84 -51.91 -0.36 1.67 16 41 H 0.12 1.93 7.91 -51.91 -0.41 1.52 16 42 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.72 7.73 -51.93 -0.40 0.32 16 47 H 0.12 2.11 7.56 -52.49 -0.40 1.71 16 LS Contribution 412.34 15.07 6.21 6.21 Total: -1.00 -34.61 412.34 -10.77 -45.38 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.96 Total: 2.20 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.76 Total: -5.44 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.09 Total: -51.19 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.23 Total: -1.48 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.61 -10.77 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005358674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.135 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds