Wall clock time and date at job start Tue Mar 31 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47217 * 2 1 4 4 S 1.81407 * 109.47299 * 239.99909 * 2 1 3 5 5 C 1.76204 * 102.99505 * 68.50949 * 4 2 1 6 6 C 1.38966 * 120.07972 * 274.17812 * 5 4 2 7 7 C 1.38087 * 119.91782 * 179.77206 * 6 5 4 8 8 C 1.38300 * 120.08083 * 0.48557 * 7 6 5 9 9 C 1.38302 * 120.15954 * 359.76912 * 8 7 6 10 10 C 1.38082 * 120.07929 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.47254 * 120.00057 * 2 1 3 12 12 O 1.21301 * 120.00026 * 100.27810 * 11 2 1 13 13 N 1.34774 * 119.99977 * 279.99812 * 11 2 1 14 14 N 1.40099 * 120.00104 * 179.97438 * 13 11 2 15 15 C 1.28006 * 119.99969 * 174.43945 * 14 13 11 16 16 C 1.51277 * 120.85193 * 4.41605 * 15 14 13 17 17 C 1.52798 * 108.76254 * 231.31349 * 16 15 14 18 18 C 1.52956 * 109.48371 * 305.60617 * 17 16 15 19 19 C 1.52961 * 109.81925 * 63.46852 * 18 17 16 20 20 C 1.51272 * 120.84997 * 184.69607 * 15 14 13 21 21 H 1.08997 * 109.62421 * 248.34316 * 20 15 14 22 22 C 1.52996 * 109.62440 * 8.91518 * 20 15 14 23 23 C 1.50703 * 109.46966 * 294.99735 * 22 20 15 24 24 H 1.07992 * 119.99990 * 359.97438 * 23 22 20 25 25 C 1.37882 * 119.99634 * 180.02562 * 23 22 20 26 26 N 1.31510 * 119.99943 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99540 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47405 * 60.00212 * 27 25 23 29 29 H 1.48504 * 109.46786 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47186 * 299.99905 * 27 25 23 31 31 H 1.09001 * 109.47168 * 54.84757 * 1 2 3 32 32 H 1.08999 * 109.47116 * 174.84605 * 1 2 3 33 33 H 1.08994 * 109.47340 * 294.84719 * 1 2 3 34 34 H 1.08005 * 120.04390 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.96119 * 180.23778 * 7 6 5 36 36 H 1.08004 * 119.92457 * 179.74876 * 8 7 6 37 37 H 1.08001 * 119.95973 * 179.97438 * 9 8 7 38 38 H 1.08006 * 120.03734 * 179.97438 * 10 9 8 39 39 H 0.97002 * 119.99843 * 0.02562 * 13 11 2 40 40 H 1.08994 * 109.62037 * 351.08453 * 16 15 14 41 41 H 1.08995 * 109.62601 * 111.65708 * 16 15 14 42 42 H 1.08996 * 109.54863 * 185.53821 * 17 16 15 43 43 H 1.09007 * 109.34609 * 65.54814 * 17 16 15 44 44 H 1.08999 * 109.41670 * 303.36219 * 18 17 16 45 45 H 1.09004 * 109.35748 * 183.53654 * 18 17 16 46 46 H 1.08994 * 109.48532 * 176.41835 * 19 18 17 47 47 H 1.09004 * 109.48294 * 56.37881 * 19 18 17 48 48 H 1.08999 * 109.47214 * 54.99772 * 22 20 15 49 49 H 1.09000 * 109.47017 * 174.99674 * 22 20 15 50 50 H 0.97002 * 119.99764 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4812 5 6 1.6738 0.2367 -2.7850 6 6 0.4042 0.1567 -3.3445 7 6 0.0449 1.0172 -4.3630 8 6 0.9502 1.9511 -4.8332 9 6 2.2163 2.0300 -4.2824 10 6 2.5808 1.1764 -3.2601 11 6 2.0323 -0.7104 1.2305 12 8 2.4112 -1.8602 1.1547 13 7 2.0659 -0.0664 2.4139 14 7 2.5324 -0.7270 3.5579 15 6 2.6649 -0.0859 4.6579 16 6 2.2307 1.3588 4.7709 17 6 3.3840 2.1745 5.3533 18 6 3.8375 1.5471 6.6725 19 6 4.3864 0.1424 6.4170 20 6 3.2655 -0.7516 5.8763 21 1 2.4980 -0.8785 6.6397 22 6 3.8388 -2.1154 5.4865 23 6 2.7192 -3.0245 5.0489 24 1 1.7007 -2.6654 5.0493 25 6 2.9952 -4.3149 4.6492 26 7 4.2355 -4.7522 4.6492 27 14 1.6076 -5.4414 4.1062 28 1 0.9139 -4.8442 2.9368 29 1 2.1640 -6.7652 3.7279 30 1 0.6418 -5.6101 5.2215 31 1 -0.3633 0.5917 -0.8402 32 1 -0.3633 -1.0235 -0.0923 33 1 -0.3634 0.4318 0.9325 34 1 -0.3021 -0.5748 -2.9804 35 1 -0.9429 0.9582 -4.7956 36 1 0.6678 2.6201 -5.6326 37 1 2.9208 2.7603 -4.6523 38 1 3.5699 1.2384 -2.8307 39 1 1.7664 0.8543 2.4737 40 1 1.9746 1.7424 3.7833 41 1 1.3658 1.4306 5.4302 42 1 3.0533 3.1976 5.5321 43 1 4.2153 2.1791 4.6482 44 1 2.9899 1.4862 7.3551 45 1 4.6173 2.1653 7.1174 46 1 4.7661 -0.2747 7.3496 47 1 5.1938 0.1948 5.6866 48 1 4.5471 -1.9912 4.6674 49 1 4.3486 -2.5539 6.3443 50 1 4.4296 -5.6601 4.3683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005362328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:34 Heat of formation + Delta-G solvation = 22.939396 kcal Electronic energy + Delta-G solvation = -29624.922841 eV Core-core repulsion = 25743.878857 eV Total energy + Delta-G solvation = -3881.043985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.52872 -39.22201 -38.39591 -35.20889 -33.53010 -33.30717 -31.44534 -31.30281 -31.21305 -30.82388 -27.90423 -26.08410 -24.70571 -23.08174 -23.00179 -22.86094 -21.66953 -20.55027 -19.98861 -18.96515 -18.09136 -16.96306 -16.45795 -16.16151 -15.94922 -15.35104 -15.24276 -14.94336 -14.59450 -14.26743 -14.14004 -13.97198 -13.81923 -13.76239 -13.73845 -13.27075 -13.00013 -12.79213 -12.60529 -12.46040 -12.14227 -11.91218 -11.67750 -11.51565 -11.44969 -11.22269 -11.02393 -10.87337 -10.72146 -10.41083 -10.36262 -10.29768 -10.27135 -9.90057 -9.63252 -9.45795 -9.29773 -9.06165 -8.86850 -8.71381 -8.13801 -8.03536 -7.78643 -5.69657 -3.65067 0.57025 1.03896 1.51189 2.37965 2.48874 2.98682 3.29765 3.42017 3.54389 3.59531 3.67651 4.52647 4.54275 4.62459 4.70966 4.73441 4.75701 4.82184 4.85164 4.90804 5.08391 5.09613 5.15123 5.20959 5.34024 5.39070 5.45076 5.49342 5.59334 5.65146 5.65371 5.70671 5.81980 5.87956 5.92375 5.99864 6.04671 6.05771 6.09375 6.10591 6.26026 6.36383 6.53358 6.53878 6.69021 6.85440 7.02713 7.49422 7.82868 7.99335 8.12072 8.26018 8.67540 8.99498 9.32832 9.95335 11.43046 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.002895 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.263945 B = 9669.894286 C =11710.576509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.105 0.895 4 S -0.068 6.068 5 C -0.133 4.133 6 C -0.070 4.070 7 C -0.131 4.131 8 C -0.097 4.097 9 C -0.131 4.131 10 C -0.070 4.070 11 C 0.542 3.458 12 O -0.466 6.466 13 N -0.597 5.597 14 N -0.169 5.169 15 C 0.100 3.900 16 C -0.121 4.121 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.025 4.025 21 H 0.080 0.920 22 C 0.034 3.966 23 C -0.481 4.481 24 H 0.047 0.953 25 C 0.063 3.937 26 N -0.901 5.901 27 Si 0.883 3.117 28 H -0.276 1.276 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.369 0.631 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.022 0.978 49 H 0.018 0.982 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.976 21.144 -11.919 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.234 4.234 3 H 0.124 0.876 4 S 0.165 5.835 5 C -0.244 4.244 6 C -0.091 4.091 7 C -0.151 4.151 8 C -0.115 4.115 9 C -0.151 4.151 10 C -0.090 4.090 11 C 0.325 3.675 12 O -0.334 6.334 13 N -0.340 5.340 14 N 0.030 4.970 15 C -0.095 4.095 16 C -0.162 4.162 17 C -0.147 4.147 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.046 4.046 21 H 0.098 0.902 22 C -0.003 4.003 23 C -0.520 4.520 24 H 0.066 0.934 25 C -0.137 4.137 26 N -0.542 5.542 27 Si 0.712 3.288 28 H -0.201 1.201 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.208 0.792 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.040 0.960 49 H 0.036 0.964 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.986 18.252 -12.648 22.998 hybrid contribution -1.851 1.949 -0.236 2.698 sum -7.837 20.200 -12.884 25.208 Atomic orbital electron populations 1.22040 0.90820 1.04366 1.02873 1.23515 1.01049 1.03192 0.95688 0.87634 1.86480 1.76432 1.26563 0.93981 1.22097 0.97305 1.02069 1.02972 1.21702 0.95130 0.97362 0.94883 1.21240 1.00006 0.96299 0.97573 1.21340 0.93676 0.97709 0.98822 1.21238 0.96844 0.99779 0.97193 1.21689 0.99141 0.92715 0.95493 1.19272 0.79240 0.87033 0.81997 1.90868 1.42712 1.15921 1.83936 1.47284 1.65227 1.14208 1.07270 1.75593 1.09449 1.19250 0.92668 1.25493 0.96686 0.92039 0.95292 1.21212 0.99785 0.94329 1.00825 1.21389 0.97536 0.97976 0.97779 1.21558 1.00647 0.96981 0.96622 1.21673 0.98283 0.93781 1.01260 1.20449 0.96128 0.97102 0.90912 0.90214 1.19076 0.96623 0.87981 0.96648 1.20844 0.92868 0.95987 1.42268 0.93439 1.24811 0.94953 0.98189 0.95765 1.69924 1.17959 1.17017 1.49265 0.86787 0.82898 0.80013 0.79083 1.20150 1.21650 1.20936 0.91257 0.90255 0.91346 0.84994 0.85558 0.85758 0.85538 0.84979 0.79188 0.92385 0.89779 0.92010 0.91983 0.91859 0.92235 0.91198 0.91991 0.95964 0.96368 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.02 37.15 0.34 -1.24 16 2 C -0.10 -1.37 3.13 -27.88 -0.09 -1.46 16 3 H 0.11 1.14 8.14 -51.92 -0.42 0.72 16 4 S -0.07 -0.99 20.32 -107.50 -2.18 -3.18 16 5 C -0.13 -1.51 5.45 -39.04 -0.21 -1.72 16 6 C -0.07 -0.68 8.73 -39.37 -0.34 -1.03 16 7 C -0.13 -1.03 10.04 -39.61 -0.40 -1.43 16 8 C -0.10 -0.71 10.04 -39.54 -0.40 -1.11 16 9 C -0.13 -1.04 10.04 -39.61 -0.40 -1.44 16 10 C -0.07 -0.69 9.79 -39.37 -0.39 -1.08 16 11 C 0.54 10.26 7.12 -10.98 -0.08 10.18 16 12 O -0.47 -11.68 16.38 5.54 0.09 -11.59 16 13 N -0.60 -10.58 6.15 31.22 0.19 -10.38 16 14 N -0.17 -3.70 8.54 35.87 0.31 -3.39 16 15 C 0.10 1.85 6.15 -78.35 -0.48 1.37 16 16 C -0.12 -1.56 5.89 -27.70 -0.16 -1.72 16 17 C -0.11 -1.22 5.92 -26.86 -0.16 -1.38 16 18 C -0.12 -1.43 5.81 -26.77 -0.16 -1.58 16 19 C -0.11 -1.73 5.23 -26.63 -0.14 -1.87 16 20 C -0.03 -0.49 2.43 -91.37 -0.22 -0.72 16 21 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 22 C 0.03 0.88 4.13 -27.88 -0.12 0.76 16 23 C -0.48 -14.08 7.51 -34.44 -0.26 -14.34 16 24 H 0.05 1.39 7.46 -52.49 -0.39 0.99 16 25 C 0.06 1.93 5.46 -17.82 -0.10 1.84 16 26 N -0.90 -28.95 13.29 55.43 0.74 -28.21 16 27 Si 0.88 24.21 29.54 -169.99 -5.02 19.19 16 28 H -0.28 -7.80 7.11 56.52 0.40 -7.40 16 29 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 30 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 31 H 0.07 0.62 6.95 -51.93 -0.36 0.26 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.37 4.87 6.15 -182.60 -1.12 3.74 16 40 H 0.06 0.65 5.57 -51.93 -0.29 0.36 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.02 0.64 8.08 -51.93 -0.42 0.22 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 417.96 15.07 6.30 6.30 Total: -1.00 -38.00 417.96 -12.25 -50.25 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.91 Total: -1.03 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -3.76 Total: -17.95 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 1.23 Total: -41.99 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.02 Total: 19.19 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.18 Total: -3.18 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -38.00 -12.25 -50.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005362328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.186 kcal (2) G-P(sol) polarization free energy of solvation -38.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds