Wall clock time and date at job start Tue Mar 31 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47217 * 2 1 4 4 S 1.81407 * 109.47299 * 239.99909 * 2 1 3 5 5 C 1.76204 * 102.99505 * 68.50949 * 4 2 1 6 6 C 1.38966 * 120.07972 * 274.17812 * 5 4 2 7 7 C 1.38087 * 119.91782 * 179.77206 * 6 5 4 8 8 C 1.38300 * 120.08083 * 0.48557 * 7 6 5 9 9 C 1.38302 * 120.15954 * 359.76912 * 8 7 6 10 10 C 1.38082 * 120.07929 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.47254 * 120.00057 * 2 1 3 12 12 O 1.21301 * 120.00026 * 100.27810 * 11 2 1 13 13 N 1.34774 * 119.99977 * 279.99812 * 11 2 1 14 14 N 1.40099 * 120.00104 * 179.97438 * 13 11 2 15 15 C 1.28006 * 119.99969 * 174.43945 * 14 13 11 16 16 C 1.51277 * 120.85193 * 4.41605 * 15 14 13 17 17 C 1.52798 * 108.76254 * 231.31349 * 16 15 14 18 18 C 1.52956 * 109.48371 * 305.60617 * 17 16 15 19 19 C 1.52961 * 109.81925 * 63.46852 * 18 17 16 20 20 C 1.51272 * 120.84997 * 184.69607 * 15 14 13 21 21 H 1.08997 * 109.62421 * 248.34316 * 20 15 14 22 22 C 1.52996 * 109.62440 * 8.91518 * 20 15 14 23 23 C 1.50703 * 109.46966 * 294.99735 * 22 20 15 24 24 H 1.07992 * 119.99990 * 359.97438 * 23 22 20 25 25 C 1.37882 * 119.99634 * 180.02562 * 23 22 20 26 26 N 1.31510 * 119.99943 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99540 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47405 * 60.00212 * 27 25 23 29 29 H 1.48504 * 109.46786 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47186 * 299.99905 * 27 25 23 31 31 H 1.09001 * 109.47168 * 54.84757 * 1 2 3 32 32 H 1.08999 * 109.47116 * 174.84605 * 1 2 3 33 33 H 1.08994 * 109.47340 * 294.84719 * 1 2 3 34 34 H 1.08005 * 120.04390 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.96119 * 180.23778 * 7 6 5 36 36 H 1.08004 * 119.92457 * 179.74876 * 8 7 6 37 37 H 1.08001 * 119.95973 * 179.97438 * 9 8 7 38 38 H 1.08006 * 120.03734 * 179.97438 * 10 9 8 39 39 H 0.97002 * 119.99843 * 0.02562 * 13 11 2 40 40 H 1.08994 * 109.62037 * 351.08453 * 16 15 14 41 41 H 1.08995 * 109.62601 * 111.65708 * 16 15 14 42 42 H 1.08996 * 109.54863 * 185.53821 * 17 16 15 43 43 H 1.09007 * 109.34609 * 65.54814 * 17 16 15 44 44 H 1.08999 * 109.41670 * 303.36219 * 18 17 16 45 45 H 1.09004 * 109.35748 * 183.53654 * 18 17 16 46 46 H 1.08994 * 109.48532 * 176.41835 * 19 18 17 47 47 H 1.09004 * 109.48294 * 56.37881 * 19 18 17 48 48 H 1.08999 * 109.47214 * 54.99772 * 22 20 15 49 49 H 1.09000 * 109.47017 * 174.99674 * 22 20 15 50 50 H 0.97002 * 119.99764 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4812 5 6 1.6738 0.2367 -2.7850 6 6 0.4042 0.1567 -3.3445 7 6 0.0449 1.0172 -4.3630 8 6 0.9502 1.9511 -4.8332 9 6 2.2163 2.0300 -4.2824 10 6 2.5808 1.1764 -3.2601 11 6 2.0323 -0.7104 1.2305 12 8 2.4112 -1.8602 1.1547 13 7 2.0659 -0.0664 2.4139 14 7 2.5324 -0.7270 3.5579 15 6 2.6649 -0.0859 4.6579 16 6 2.2307 1.3588 4.7709 17 6 3.3840 2.1745 5.3533 18 6 3.8375 1.5471 6.6725 19 6 4.3864 0.1424 6.4170 20 6 3.2655 -0.7516 5.8763 21 1 2.4980 -0.8785 6.6397 22 6 3.8388 -2.1154 5.4865 23 6 2.7192 -3.0245 5.0489 24 1 1.7007 -2.6654 5.0493 25 6 2.9952 -4.3149 4.6492 26 7 4.2355 -4.7522 4.6492 27 14 1.6076 -5.4414 4.1062 28 1 0.9139 -4.8442 2.9368 29 1 2.1640 -6.7652 3.7279 30 1 0.6418 -5.6101 5.2215 31 1 -0.3633 0.5917 -0.8402 32 1 -0.3633 -1.0235 -0.0923 33 1 -0.3634 0.4318 0.9325 34 1 -0.3021 -0.5748 -2.9804 35 1 -0.9429 0.9582 -4.7956 36 1 0.6678 2.6201 -5.6326 37 1 2.9208 2.7603 -4.6523 38 1 3.5699 1.2384 -2.8307 39 1 1.7664 0.8543 2.4737 40 1 1.9746 1.7424 3.7833 41 1 1.3658 1.4306 5.4302 42 1 3.0533 3.1976 5.5321 43 1 4.2153 2.1791 4.6482 44 1 2.9899 1.4862 7.3551 45 1 4.6173 2.1653 7.1174 46 1 4.7661 -0.2747 7.3496 47 1 5.1938 0.1948 5.6866 48 1 4.5471 -1.9912 4.6674 49 1 4.3486 -2.5539 6.3443 50 1 4.4296 -5.6601 4.3683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005362328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:33 Heat of formation + Delta-G solvation = -0.260501 kcal Electronic energy + Delta-G solvation = -29625.928865 eV Core-core repulsion = 25743.878857 eV Total energy + Delta-G solvation = -3882.050008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.98513 -39.87602 -39.79203 -36.66259 -35.33133 -34.63373 -33.21795 -32.28350 -31.94124 -31.79301 -29.47426 -27.77491 -25.82956 -24.77963 -23.78901 -23.50834 -23.09861 -21.82799 -21.45476 -20.29965 -19.03760 -18.33248 -18.16277 -17.65470 -17.04603 -16.52438 -16.44059 -16.11807 -15.87015 -15.84434 -15.44289 -15.06034 -14.88357 -14.87357 -14.62869 -14.39337 -14.16268 -13.94213 -13.72094 -13.56164 -13.46809 -13.39054 -13.14379 -13.00373 -12.73807 -12.61968 -12.35373 -12.23375 -12.12859 -12.11470 -11.93805 -11.51908 -11.46205 -11.32193 -11.27649 -11.08694 -10.92495 -10.46503 -10.19969 -9.94817 -9.81622 -9.63990 -8.92562 -8.09214 -6.08380 -0.22542 0.39488 0.57936 0.98324 1.27874 1.37303 1.41995 1.50624 1.66980 1.89241 2.45585 2.75236 3.27422 3.34829 3.64153 3.68631 3.77923 3.83069 3.92796 4.05640 4.06226 4.12490 4.20036 4.31210 4.48403 4.49592 4.49863 4.50961 4.53121 4.55908 4.62075 4.75714 4.79027 4.96824 5.04094 5.05487 5.06662 5.10330 5.18855 5.30366 5.36503 5.37654 5.39724 5.41886 5.49484 5.53518 5.61801 5.81375 5.92957 5.93096 6.15733 6.35362 6.70262 6.99675 7.54585 7.62842 9.03922 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.002895 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.263945 B = 9669.894286 C =11710.576509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 H 0.137 0.863 4 S -0.145 6.145 5 C -0.137 4.137 6 C -0.082 4.082 7 C -0.128 4.128 8 C -0.091 4.091 9 C -0.128 4.128 10 C -0.085 4.085 11 C 0.536 3.464 12 O -0.543 6.543 13 N -0.580 5.580 14 N -0.250 5.250 15 C 0.108 3.892 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.113 4.113 19 C -0.106 4.106 20 C -0.026 4.026 21 H 0.090 0.910 22 C 0.042 3.958 23 C -0.473 4.473 24 H 0.045 0.955 25 C 0.001 3.999 26 N -0.939 5.939 27 Si 0.939 3.061 28 H -0.294 1.294 29 H -0.286 1.286 30 H -0.258 1.258 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.393 0.607 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.044 0.956 48 H -0.021 1.021 49 H -0.003 1.003 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.461 25.834 -12.458 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.211 4.211 3 H 0.155 0.845 4 S 0.089 5.911 5 C -0.248 4.248 6 C -0.103 4.103 7 C -0.148 4.148 8 C -0.109 4.109 9 C -0.148 4.148 10 C -0.105 4.105 11 C 0.322 3.678 12 O -0.417 6.417 13 N -0.325 5.325 14 N -0.052 5.052 15 C -0.086 4.086 16 C -0.155 4.155 17 C -0.143 4.143 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.047 4.047 21 H 0.108 0.892 22 C 0.005 3.995 23 C -0.512 4.512 24 H 0.063 0.937 25 C -0.194 4.194 26 N -0.582 5.582 27 Si 0.766 3.234 28 H -0.221 1.221 29 H -0.212 1.212 30 H -0.182 1.182 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.147 0.853 39 H 0.236 0.764 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.062 0.938 48 H -0.002 1.002 49 H 0.015 0.985 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.498 22.994 -13.138 27.812 hybrid contribution -1.051 0.579 -0.115 1.206 sum -9.549 23.573 -13.253 28.679 Atomic orbital electron populations 1.22030 0.88700 1.03802 1.04872 1.23407 1.02362 1.03246 0.92105 0.84517 1.86765 1.77540 1.29746 0.97084 1.21870 0.98563 1.02285 1.02125 1.21779 0.94524 0.98140 0.95814 1.21555 1.01324 0.95413 0.96504 1.21763 0.92947 0.97388 0.98789 1.21539 0.97777 0.99380 0.96115 1.21769 0.98963 0.93220 0.96586 1.20292 0.77691 0.86451 0.83386 1.90826 1.46259 1.19369 1.85215 1.46998 1.64348 1.15025 1.06125 1.75474 1.12419 1.22559 0.94726 1.25747 0.94422 0.94849 0.93581 1.21335 1.01240 0.90196 1.02775 1.21425 0.96438 0.99543 0.96895 1.21534 1.01888 0.94064 0.97559 1.21622 0.96329 0.95974 1.00567 1.20367 0.97620 0.94467 0.92216 0.89155 1.18874 0.94904 0.91667 0.94059 1.21188 0.93502 0.96115 1.40348 0.93660 1.25614 0.96994 1.00202 0.96622 1.70050 1.19737 1.17268 1.51168 0.85899 0.80682 0.78232 0.78548 1.22081 1.21172 1.18213 0.88531 0.92330 0.89676 0.85066 0.82985 0.82562 0.83098 0.85302 0.76434 0.90548 0.87371 0.88046 0.93012 0.90214 0.89751 0.90833 0.93760 1.00246 0.98457 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.02 71.98 0.65 -2.23 16 2 C -0.08 -2.15 3.13 29.85 0.09 -2.06 16 3 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 4 S -0.14 -4.51 20.32 -56.49 -1.15 -5.66 16 5 C -0.14 -3.06 5.45 22.62 0.12 -2.93 16 6 C -0.08 -1.49 8.73 22.41 0.20 -1.29 16 7 C -0.13 -1.62 10.04 22.25 0.22 -1.39 16 8 C -0.09 -0.97 10.04 22.30 0.22 -0.75 16 9 C -0.13 -1.67 10.04 22.25 0.22 -1.45 16 10 C -0.08 -1.59 9.79 22.41 0.22 -1.37 16 11 C 0.54 21.22 7.12 87.66 0.62 21.85 16 12 O -0.54 -29.40 16.38 -3.09 -0.05 -29.45 16 13 N -0.58 -20.79 6.15 -173.52 -1.07 -21.86 16 14 N -0.25 -11.29 8.54 -40.32 -0.34 -11.63 16 15 C 0.11 3.96 6.15 46.90 0.29 4.25 16 16 C -0.12 -2.57 5.89 29.96 0.18 -2.39 16 17 C -0.10 -1.91 5.92 30.51 0.18 -1.72 16 18 C -0.11 -2.24 5.81 30.57 0.18 -2.06 16 19 C -0.11 -3.22 5.23 30.66 0.16 -3.06 16 20 C -0.03 -1.03 2.43 -11.28 -0.03 -1.06 16 21 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 22 C 0.04 2.32 4.13 29.85 0.12 2.44 16 23 C -0.47 -28.93 7.51 25.60 0.19 -28.74 16 24 H 0.05 2.73 7.46 -2.91 -0.02 2.71 16 25 C 0.00 0.08 5.46 84.66 0.46 0.55 16 26 N -0.94 -63.67 13.29 21.45 0.28 -63.39 16 27 Si 0.94 51.93 29.54 68.60 2.03 53.96 16 28 H -0.29 -17.04 7.11 99.48 0.71 -16.33 16 29 H -0.29 -15.47 7.11 99.48 0.71 -14.76 16 30 H -0.26 -13.04 7.11 99.48 0.71 -12.33 16 31 H 0.10 1.54 6.95 -2.39 -0.02 1.52 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 37 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.39 9.74 6.15 -213.32 -1.31 8.43 16 40 H 0.08 1.42 5.57 -2.39 -0.01 1.41 16 41 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 48 H -0.02 -1.32 8.08 -2.39 -0.02 -1.34 16 49 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 50 H 0.25 16.54 8.31 -92.71 -0.77 15.77 16 Total: -1.00 -93.10 417.96 3.63 -89.47 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -0.38 Total: 11.98 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.31 Total: -23.42 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -1.13 Total: -96.88 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.05 Total: -29.45 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.03 Total: 53.96 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -1.15 Total: -5.66 kcal Total: -93.10 3.63 -89.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005362328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.208 kcal (2) G-P(sol) polarization free energy of solvation -93.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds