Wall clock time and date at job start Tue Mar 31 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46782 * 2 1 4 4 S 1.81402 * 109.46676 * 240.00441 * 2 1 3 5 5 C 1.76209 * 102.99676 * 171.50530 * 4 2 1 6 6 C 1.38972 * 120.08063 * 353.62355 * 5 4 2 7 7 C 1.38081 * 119.91796 * 179.76586 * 6 5 4 8 8 C 1.38304 * 120.08039 * 0.49475 * 7 6 5 9 9 C 1.38302 * 120.16022 * 359.75779 * 8 7 6 10 10 C 1.38079 * 120.07997 * 0.02562 * 9 8 7 11 11 C 1.50693 * 109.47306 * 120.00465 * 2 1 3 12 12 O 1.21300 * 120.00401 * 100.00324 * 11 2 1 13 13 N 1.34781 * 120.00112 * 279.99652 * 11 2 1 14 14 N 1.40095 * 120.00527 * 179.72286 * 13 11 2 15 15 C 1.28004 * 120.00368 * 175.28348 * 14 13 11 16 16 C 1.51265 * 120.85007 * 5.83544 * 15 14 13 17 17 C 1.53668 * 108.31222 * 128.61360 * 16 15 14 18 18 C 1.52958 * 109.32385 * 54.86220 * 17 16 15 19 19 C 1.52964 * 109.81468 * 296.27113 * 18 17 16 20 20 C 1.51272 * 120.85038 * 186.10895 * 15 14 13 21 21 H 1.09004 * 109.62327 * 111.61815 * 20 15 14 22 22 C 1.52995 * 109.62789 * 351.23943 * 20 15 14 23 23 C 1.50698 * 109.47456 * 64.99493 * 22 20 15 24 24 H 1.07996 * 119.99648 * 0.02562 * 23 22 20 25 25 C 1.37877 * 119.99962 * 179.97438 * 23 22 20 26 26 N 1.31509 * 120.00460 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99676 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47206 * 90.00066 * 27 25 23 29 29 H 1.48499 * 109.47075 * 210.00246 * 27 25 23 30 30 H 1.48506 * 109.47226 * 330.00244 * 27 25 23 31 31 H 1.09004 * 109.46669 * 184.95826 * 1 2 3 32 32 H 1.08997 * 109.46691 * 304.95213 * 1 2 3 33 33 H 1.08996 * 109.47156 * 64.95454 * 1 2 3 34 34 H 1.08001 * 120.03801 * 0.02562 * 6 5 4 35 35 H 1.08008 * 119.95898 * 180.23646 * 7 6 5 36 36 H 1.08003 * 119.91734 * 179.74726 * 8 7 6 37 37 H 1.07998 * 119.95643 * 179.97438 * 9 8 7 38 38 H 1.08000 * 120.03937 * 179.97438 * 10 9 8 39 39 H 0.96999 * 119.99642 * 0.02562 * 13 11 2 40 40 H 1.09000 * 109.62757 * 248.38582 * 16 15 14 41 41 H 1.09001 * 109.62809 * 8.95955 * 16 15 14 42 42 H 1.09004 * 109.62611 * 294.83991 * 17 16 15 43 43 H 1.09003 * 109.41571 * 174.75360 * 17 16 15 44 44 H 1.08998 * 109.40938 * 176.16944 * 18 17 16 45 45 H 1.09000 * 109.41482 * 56.37961 * 18 17 16 46 46 H 1.08997 * 109.48304 * 303.61896 * 19 18 17 47 47 H 1.08998 * 109.48669 * 183.58536 * 19 18 17 48 48 H 1.08996 * 109.47173 * 184.99997 * 22 20 15 49 49 H 1.09004 * 109.46816 * 304.99801 * 22 20 15 50 50 H 0.96996 * 120.00500 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8550 -1.4812 5 6 3.8677 -0.5393 -1.4415 6 6 4.3968 0.3242 -0.4898 7 6 5.7560 0.5655 -0.4586 8 6 6.5893 -0.0430 -1.3795 9 6 6.0657 -0.8988 -2.3314 10 6 4.7081 -1.1483 -2.3658 11 6 2.0324 -0.7105 1.2303 12 8 2.4067 -1.8619 1.1556 13 7 2.0661 -0.0665 2.4139 14 7 2.5276 -0.7288 3.5589 15 6 2.6449 -0.0920 4.6631 16 6 2.1688 1.3383 4.7880 17 6 1.2567 1.4376 6.0208 18 6 2.0051 0.9137 7.2476 19 6 2.3221 -0.5717 7.0664 20 6 3.2689 -0.7485 5.8747 21 1 4.2264 -0.2761 6.0946 22 6 3.4822 -2.2382 5.5992 23 6 4.4920 -2.4052 4.4932 24 1 4.9375 -1.5356 4.0330 25 6 4.8480 -3.6680 4.0694 26 7 4.3059 -4.7269 4.6301 27 14 6.1003 -3.8748 2.6989 28 1 7.4635 -3.9565 3.2821 29 1 5.8086 -5.1210 1.9458 30 1 6.0243 -2.7113 1.7792 31 1 -0.3633 -1.0239 0.0888 32 1 -0.3632 0.5887 0.8423 33 1 -0.3633 0.4350 -0.9310 34 1 3.7461 0.8027 0.2272 35 1 6.1683 1.2336 0.2832 36 1 7.6516 0.1508 -1.3553 37 1 6.7194 -1.3719 -3.0492 38 1 4.2998 -1.8165 -3.1096 39 1 1.7665 0.8541 2.4737 40 1 3.0261 2.0004 4.9091 41 1 1.6103 1.6177 3.8946 42 1 0.3585 0.8412 5.8606 43 1 0.9779 2.4789 6.1823 44 1 1.3850 1.0463 8.1341 45 1 2.9343 1.4702 7.3701 46 1 1.3987 -1.1206 6.8816 47 1 2.7982 -0.9547 7.9690 48 1 3.8487 -2.7259 6.5025 49 1 2.5371 -2.6913 5.2997 50 1 4.5561 -5.6153 4.3318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005362331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:39 Heat of formation + Delta-G solvation = 23.613248 kcal Electronic energy + Delta-G solvation = -30843.948723 eV Core-core repulsion = 26962.933959 eV Total energy + Delta-G solvation = -3881.014764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.60487 -38.83544 -38.38224 -35.22534 -33.56681 -33.32814 -31.41183 -31.02293 -30.93620 -30.83482 -27.90918 -26.11528 -24.94832 -23.03978 -22.69787 -22.52110 -21.58285 -20.57711 -19.99090 -18.96413 -17.76136 -17.09310 -16.62394 -16.06994 -15.92203 -15.34422 -15.01844 -14.82848 -14.57570 -14.26097 -14.09277 -14.06943 -13.84500 -13.67545 -13.41496 -13.00136 -12.89248 -12.64529 -12.59294 -12.39964 -12.12397 -11.91579 -11.69886 -11.36199 -11.27310 -11.05852 -11.04951 -10.85705 -10.74340 -10.43594 -10.35410 -10.30081 -10.25615 -9.91654 -9.69965 -9.64758 -9.45268 -8.94289 -8.88187 -8.73916 -8.14030 -8.04768 -7.34274 -5.71851 -3.66993 1.18316 1.39112 1.42068 2.19463 2.40515 2.97497 3.28094 3.51592 3.60739 3.69576 3.75982 4.43025 4.59422 4.71053 4.75058 4.83033 4.85544 4.87701 4.94726 5.05058 5.10157 5.19175 5.27818 5.38704 5.40108 5.48285 5.52413 5.57185 5.62632 5.68865 5.75519 5.77778 5.80189 5.90361 5.98380 6.03457 6.07480 6.24192 6.26444 6.34531 6.38931 6.52038 6.52252 6.67660 6.82698 6.92575 7.00624 7.47200 7.80836 7.96882 8.11384 8.23982 8.65187 8.97783 9.30885 9.93961 11.40704 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.008259 B = 0.004356 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.602042 B = 6426.674986 C = 8207.148271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 H 0.110 0.890 4 S -0.052 6.052 5 C -0.081 4.081 6 C -0.125 4.125 7 C -0.095 4.095 8 C -0.126 4.126 9 C -0.103 4.103 10 C -0.101 4.101 11 C 0.518 3.482 12 O -0.457 6.457 13 N -0.597 5.597 14 N -0.168 5.168 15 C 0.097 3.903 16 C -0.121 4.121 17 C -0.107 4.107 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.024 4.024 21 H 0.081 0.919 22 C 0.033 3.967 23 C -0.478 4.478 24 H 0.047 0.953 25 C 0.064 3.936 26 N -0.901 5.901 27 Si 0.883 3.117 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.274 1.274 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.367 0.633 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.018 0.982 49 H 0.022 0.978 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 17.659 -7.436 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.242 4.242 3 H 0.128 0.872 4 S 0.193 5.807 5 C -0.194 4.194 6 C -0.148 4.148 7 C -0.115 4.115 8 C -0.146 4.146 9 C -0.122 4.122 10 C -0.125 4.125 11 C 0.298 3.702 12 O -0.324 6.324 13 N -0.341 5.341 14 N 0.031 4.969 15 C -0.098 4.098 16 C -0.161 4.161 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.045 4.045 21 H 0.099 0.901 22 C -0.004 4.004 23 C -0.517 4.517 24 H 0.065 0.935 25 C -0.136 4.136 26 N -0.542 5.542 27 Si 0.712 3.288 28 H -0.216 1.216 29 H -0.216 1.216 30 H -0.199 1.199 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.206 0.794 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.036 0.964 49 H 0.040 0.960 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.245 15.138 -8.921 18.648 hybrid contribution 1.159 1.824 0.419 2.201 sum -5.086 16.962 -8.503 19.643 Atomic orbital electron populations 1.21539 0.88954 1.04475 1.03704 1.23817 1.02224 1.03152 0.95032 0.87195 1.85178 0.98926 1.70145 1.26473 1.21742 0.97454 1.00458 0.99755 1.21030 0.96330 0.99196 0.98275 1.21027 0.92952 0.99422 0.98106 1.21160 0.99786 0.97921 0.95779 1.21058 0.94541 0.97880 0.98765 1.20711 0.93117 0.99741 0.98892 1.19994 0.79674 0.87745 0.82762 1.90897 1.41976 1.15691 1.83821 1.47324 1.65354 1.14145 1.07276 1.75556 1.08651 1.20072 0.92592 1.25473 0.96800 0.92661 0.94899 1.21359 1.00193 0.95982 0.98602 1.21522 0.98124 1.00585 0.94289 1.21554 1.00093 0.97269 0.96886 1.21685 1.00071 0.94850 0.98519 1.20441 0.95869 1.00601 0.87564 0.90097 1.19075 0.97788 0.86707 0.96805 1.20854 1.21993 0.91492 1.17319 0.93517 1.24781 0.96476 0.96201 0.96099 1.69930 1.43887 0.97668 1.42708 0.86711 0.81107 0.77829 0.83114 1.21553 1.21561 1.19896 0.90556 0.90415 0.90120 0.86758 0.85807 0.85830 0.85551 0.85529 0.79357 0.89947 0.92375 0.91923 0.92017 0.92242 0.91906 0.91998 0.91313 0.96381 0.95955 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.18 37.16 0.34 -0.95 16 2 C -0.11 -1.43 2.42 -27.88 -0.07 -1.50 16 3 H 0.11 1.15 6.93 -51.92 -0.36 0.79 16 4 S -0.05 -0.78 20.57 -107.50 -2.21 -2.99 16 5 C -0.08 -1.32 6.04 -39.04 -0.24 -1.55 16 6 C -0.12 -2.00 8.82 -39.37 -0.35 -2.34 16 7 C -0.10 -1.42 10.04 -39.61 -0.40 -1.82 16 8 C -0.13 -1.74 10.04 -39.53 -0.40 -2.13 16 9 C -0.10 -1.39 10.04 -39.62 -0.40 -1.79 16 10 C -0.10 -1.51 9.79 -39.37 -0.39 -1.89 16 11 C 0.52 9.60 5.56 -10.99 -0.06 9.54 16 12 O -0.46 -11.34 16.38 5.54 0.09 -11.25 16 13 N -0.60 -10.35 6.14 31.22 0.19 -10.16 16 14 N -0.17 -3.62 8.54 35.87 0.31 -3.31 16 15 C 0.10 1.77 6.13 -78.36 -0.48 1.29 16 16 C -0.12 -1.53 5.89 -27.26 -0.16 -1.69 16 17 C -0.11 -1.18 5.95 -26.41 -0.16 -1.34 16 18 C -0.12 -1.41 5.81 -26.77 -0.16 -1.57 16 19 C -0.11 -1.73 5.24 -26.63 -0.14 -1.87 16 20 C -0.02 -0.47 2.42 -91.38 -0.22 -0.69 16 21 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 22 C 0.03 0.86 4.14 -27.89 -0.12 0.75 16 23 C -0.48 -13.99 7.51 -34.44 -0.26 -14.25 16 24 H 0.05 1.38 7.46 -52.49 -0.39 0.98 16 25 C 0.06 1.99 5.46 -17.82 -0.10 1.89 16 26 N -0.90 -28.97 13.29 55.43 0.74 -28.23 16 27 Si 0.88 24.72 29.54 -169.99 -5.02 19.70 16 28 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 29 H -0.29 -8.18 7.11 56.52 0.40 -7.78 16 30 H -0.27 -7.87 7.11 56.52 0.40 -7.47 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.71 5.14 -52.49 -0.27 1.44 16 35 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.37 4.70 6.20 -182.60 -1.13 3.56 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.63 5.69 -51.93 -0.30 0.34 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.02 0.64 8.08 -51.93 -0.42 0.22 16 50 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 414.00 15.07 6.24 6.24 Total: -1.00 -38.57 414.00 -12.17 -50.73 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.77 Total: 1.17 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -3.73 Total: -21.91 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 1.23 Total: -41.70 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.02 Total: 19.70 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.21 Total: -2.99 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -38.57 -12.17 -50.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005362331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.348 kcal (2) G-P(sol) polarization free energy of solvation -38.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds