Wall clock time and date at job start Tue Mar 31 2020 06:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47422 * 2 1 4 4 S 1.81404 * 109.47271 * 119.99802 * 2 1 3 5 5 C 1.76203 * 103.00159 * 188.52696 * 4 2 1 6 6 C 1.38978 * 120.07610 * 5.71664 * 5 4 2 7 7 C 1.38082 * 119.91256 * 179.76517 * 6 5 4 8 8 C 1.38307 * 120.08332 * 0.48540 * 7 6 5 9 9 C 1.38302 * 120.15907 * 359.76561 * 8 7 6 10 10 C 1.38081 * 120.08095 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.47133 * 240.00067 * 2 1 3 12 12 O 1.21301 * 119.99640 * 264.99758 * 11 2 1 13 13 N 1.34776 * 120.00156 * 85.00327 * 11 2 1 14 14 N 1.40108 * 119.99798 * 180.02562 * 13 11 2 15 15 C 1.28003 * 119.99519 * 184.62457 * 14 13 11 16 16 C 1.51268 * 120.85388 * 353.86019 * 15 14 13 17 17 C 1.53229 * 108.53944 * 231.32781 * 16 15 14 18 18 C 1.52958 * 109.40430 * 305.37152 * 17 16 15 19 19 C 1.52958 * 109.81661 * 63.59445 * 18 17 16 20 20 C 1.51272 * 120.84888 * 173.83702 * 15 14 13 21 21 H 1.08998 * 109.62727 * 248.38755 * 20 15 14 22 22 C 1.52998 * 109.78018 * 8.87075 * 20 15 14 23 23 C 1.50704 * 109.46667 * 294.13433 * 22 20 15 24 24 H 1.07993 * 120.00390 * 0.02562 * 23 22 20 25 25 C 1.37886 * 119.99673 * 180.02562 * 23 22 20 26 26 N 1.31510 * 119.99980 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99625 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47193 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47317 * 120.00511 * 27 25 23 30 30 H 1.48503 * 109.46891 * 240.00079 * 27 25 23 31 31 H 1.08997 * 109.46758 * 64.94264 * 1 2 3 32 32 H 1.08993 * 109.47146 * 184.94936 * 1 2 3 33 33 H 1.09007 * 109.47061 * 304.94543 * 1 2 3 34 34 H 1.07998 * 120.04231 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.96113 * 180.23209 * 7 6 5 36 36 H 1.07996 * 119.91702 * 179.74744 * 8 7 6 37 37 H 1.07995 * 119.96125 * 179.97438 * 9 8 7 38 38 H 1.08003 * 120.04124 * 179.97438 * 10 9 8 39 39 H 0.96994 * 119.99701 * 359.97438 * 13 11 2 40 40 H 1.09004 * 109.62865 * 351.03817 * 16 15 14 41 41 H 1.09001 * 109.62735 * 111.41907 * 16 15 14 42 42 H 1.08998 * 109.48447 * 185.39220 * 17 16 15 43 43 H 1.08996 * 109.48373 * 65.34711 * 17 16 15 44 44 H 1.08996 * 109.41376 * 303.49155 * 18 17 16 45 45 H 1.09007 * 109.41806 * 183.70304 * 18 17 16 46 46 H 1.09007 * 109.48326 * 56.38647 * 19 18 17 47 47 H 1.09005 * 109.48138 * 176.41059 * 19 18 17 48 48 H 1.08995 * 109.47567 * 54.13590 * 22 20 15 49 49 H 1.09003 * 109.46944 * 174.14184 * 22 20 15 50 50 H 0.97001 * 119.99843 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 3.8676 -0.5385 1.4419 6 6 4.3982 0.3149 0.4818 7 6 5.7560 0.5644 0.4572 8 6 6.5891 -0.0416 1.3801 9 6 6.0653 -0.8954 2.3337 10 6 4.7077 -1.1455 2.3678 11 6 2.0323 -0.7104 -1.2304 12 8 2.3208 -1.8873 -1.1759 13 7 2.1611 -0.0380 -2.3914 14 7 2.6276 -0.6987 -3.5355 15 6 2.8342 -0.0416 -4.6144 16 6 2.4523 1.4184 -4.7187 17 6 1.6088 1.6121 -5.9832 18 6 2.3747 1.0731 -7.1925 19 6 2.5867 -0.4343 -7.0422 20 6 3.4670 -0.7050 -5.8176 21 1 4.4617 -0.2912 -5.9830 22 6 3.5704 -2.2133 -5.5825 23 6 4.5336 -2.4809 -4.4547 24 1 5.0226 -1.6577 -3.9554 25 6 4.7905 -3.7770 -4.0604 26 7 4.1953 -4.7796 -4.6688 27 14 5.9838 -4.1087 -2.6621 28 1 6.5157 -2.8205 -2.1492 29 1 5.2785 -4.8242 -1.5686 30 1 7.1064 -4.9451 -3.1574 31 1 -0.3633 0.4352 -0.9309 32 1 -0.3633 -1.0238 0.0887 33 1 -0.3633 0.5887 0.8424 34 1 3.7488 0.7848 -0.2419 35 1 6.1687 1.2303 -0.2862 36 1 7.6512 0.1523 1.3559 37 1 6.7187 -1.3671 3.0525 38 1 4.2994 -1.8127 3.1125 39 1 1.9301 0.9030 -2.4350 40 1 1.8713 1.7083 -3.8432 41 1 3.3531 2.0291 -4.7789 42 1 1.4054 2.6735 -6.1254 43 1 0.6678 1.0722 -5.8788 44 1 3.3425 1.5701 -7.2594 45 1 1.8040 1.2700 -8.1001 46 1 1.6225 -0.9259 -6.9127 47 1 3.0761 -0.8234 -7.9351 48 1 2.5884 -2.6089 -5.3232 49 1 3.9297 -2.6987 -6.4900 50 1 4.3763 -5.6914 -4.3917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005370453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:44 Heat of formation + Delta-G solvation = 22.973181 kcal Electronic energy + Delta-G solvation = -30845.641881 eV Core-core repulsion = 26964.599361 eV Total energy + Delta-G solvation = -3881.042520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.61988 -38.85460 -38.39949 -35.23875 -33.56186 -33.33598 -31.42653 -31.03873 -30.95722 -30.86530 -27.93164 -26.11940 -24.94614 -23.04241 -22.71713 -22.53570 -21.59157 -20.58059 -20.00766 -18.96620 -17.78825 -17.10534 -16.62975 -16.07387 -15.93716 -15.38340 -14.97196 -14.84355 -14.60493 -14.26168 -14.10911 -14.07969 -13.85354 -13.70129 -13.42845 -13.01892 -12.90572 -12.65581 -12.59402 -12.39960 -12.13185 -11.92380 -11.70863 -11.38061 -11.27240 -11.06939 -11.04868 -10.86372 -10.75657 -10.44099 -10.36375 -10.31229 -10.24728 -9.92609 -9.73180 -9.65428 -9.45701 -8.96588 -8.87782 -8.74878 -8.15174 -8.05529 -7.36129 -5.72552 -3.67693 1.16521 1.36545 1.39520 2.17104 2.40020 2.96205 3.27740 3.51554 3.62975 3.65343 3.73657 4.42103 4.57831 4.71205 4.74249 4.82137 4.83663 4.87147 4.92769 5.05119 5.08568 5.18750 5.28682 5.37355 5.39284 5.47758 5.50373 5.56809 5.62891 5.68280 5.73444 5.77809 5.79985 5.90075 5.96419 6.03156 6.07200 6.24012 6.24370 6.34403 6.37025 6.50159 6.51878 6.67213 6.82486 6.90404 7.00408 7.45832 7.80764 7.96885 8.10214 8.23626 8.64817 8.96411 9.30713 9.93400 11.40087 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.008088 B = 0.004371 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.897234 B = 6404.421547 C = 8089.874010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 H 0.109 0.891 4 S -0.052 6.052 5 C -0.083 4.083 6 C -0.126 4.126 7 C -0.096 4.096 8 C -0.125 4.125 9 C -0.103 4.103 10 C -0.101 4.101 11 C 0.518 3.482 12 O -0.457 6.457 13 N -0.598 5.598 14 N -0.169 5.169 15 C 0.099 3.901 16 C -0.121 4.121 17 C -0.107 4.107 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.024 4.024 21 H 0.081 0.919 22 C 0.033 3.967 23 C -0.478 4.478 24 H 0.047 0.953 25 C 0.064 3.936 26 N -0.901 5.901 27 Si 0.884 3.116 28 H -0.278 1.278 29 H -0.285 1.285 30 H -0.291 1.291 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.367 0.633 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.022 0.978 49 H 0.018 0.982 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 18.104 7.595 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.241 4.241 3 H 0.127 0.873 4 S 0.193 5.807 5 C -0.196 4.196 6 C -0.149 4.149 7 C -0.115 4.115 8 C -0.146 4.146 9 C -0.122 4.122 10 C -0.124 4.124 11 C 0.299 3.701 12 O -0.325 6.325 13 N -0.341 5.341 14 N 0.030 4.970 15 C -0.097 4.097 16 C -0.161 4.161 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.045 4.045 21 H 0.099 0.901 22 C -0.004 4.004 23 C -0.517 4.517 24 H 0.065 0.935 25 C -0.136 4.136 26 N -0.542 5.542 27 Si 0.713 3.287 28 H -0.202 1.202 29 H -0.211 1.211 30 H -0.218 1.218 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.207 0.793 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.041 0.959 49 H 0.037 0.963 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.512 15.547 9.032 18.806 hybrid contribution 1.208 1.791 -0.363 2.191 sum -4.303 17.338 8.669 19.857 Atomic orbital electron populations 1.21529 0.88869 1.04562 1.03650 1.23790 1.02278 1.03032 0.95046 0.87291 1.85229 0.98886 1.69838 1.26722 1.21770 0.97498 1.00633 0.99724 1.21045 0.96369 0.99338 0.98193 1.21030 0.92950 0.99396 0.98154 1.21166 0.99799 0.97884 0.95752 1.21064 0.94536 0.97877 0.98751 1.20717 0.93120 0.99692 0.98891 1.20002 0.79313 0.88051 0.82769 1.90894 1.43981 1.14421 1.83156 1.47333 1.66552 1.11518 1.08714 1.75535 1.08214 1.20575 0.92696 1.25473 0.96736 0.92370 0.95114 1.21278 1.00717 0.95595 0.98532 1.21441 0.98556 1.00409 0.94113 1.21555 1.00165 0.97076 0.97010 1.21691 1.00555 0.94517 0.98375 1.20441 0.96224 1.00358 0.87457 0.90061 1.19082 0.98049 0.86341 0.96929 1.20903 1.23560 0.91474 1.15761 0.93465 1.24789 0.96248 0.96499 0.96059 1.69945 1.43723 0.98579 1.41911 0.86655 0.80775 0.77966 0.83289 1.20246 1.21082 1.21793 0.90406 0.90463 0.90162 0.86714 0.85785 0.85804 0.85526 0.85502 0.79342 0.92394 0.89965 0.91986 0.91943 0.91903 0.92236 0.92000 0.91296 0.95927 0.96350 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.18 37.16 0.34 -0.95 16 2 C -0.11 -1.41 2.42 -27.89 -0.07 -1.48 16 3 H 0.11 1.12 6.95 -51.92 -0.36 0.76 16 4 S -0.05 -0.77 20.63 -107.50 -2.22 -2.98 16 5 C -0.08 -1.34 6.04 -39.04 -0.24 -1.57 16 6 C -0.13 -1.98 8.82 -39.36 -0.35 -2.32 16 7 C -0.10 -1.39 10.04 -39.61 -0.40 -1.79 16 8 C -0.13 -1.69 10.04 -39.53 -0.40 -2.09 16 9 C -0.10 -1.37 10.04 -39.62 -0.40 -1.77 16 10 C -0.10 -1.48 9.79 -39.37 -0.39 -1.87 16 11 C 0.52 9.58 5.46 -10.99 -0.06 9.52 16 12 O -0.46 -11.34 16.48 5.54 0.09 -11.25 16 13 N -0.60 -10.32 6.14 31.22 0.19 -10.13 16 14 N -0.17 -3.64 8.63 35.87 0.31 -3.33 16 15 C 0.10 1.79 6.16 -78.36 -0.48 1.31 16 16 C -0.12 -1.52 5.85 -27.49 -0.16 -1.68 16 17 C -0.11 -1.18 5.94 -26.63 -0.16 -1.34 16 18 C -0.12 -1.41 5.81 -26.77 -0.16 -1.56 16 19 C -0.11 -1.74 5.23 -26.63 -0.14 -1.88 16 20 C -0.02 -0.47 2.41 -91.37 -0.22 -0.69 16 21 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 22 C 0.03 0.86 4.13 -27.88 -0.12 0.74 16 23 C -0.48 -14.02 7.56 -34.43 -0.26 -14.28 16 24 H 0.05 1.40 7.53 -52.49 -0.40 1.00 16 25 C 0.06 1.98 5.46 -17.82 -0.10 1.88 16 26 N -0.90 -28.94 13.29 55.43 0.74 -28.20 16 27 Si 0.88 24.75 29.54 -169.99 -5.02 19.73 16 28 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 29 H -0.28 -8.23 7.11 56.52 0.40 -7.83 16 30 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 1.68 5.11 -52.49 -0.27 1.41 16 35 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 39 H 0.37 4.68 6.21 -182.60 -1.13 3.55 16 40 H 0.06 0.63 5.71 -51.93 -0.30 0.33 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.02 0.65 8.06 -51.93 -0.42 0.23 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.25 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 414.21 15.07 6.24 6.24 Total: -1.00 -38.54 414.21 -12.18 -50.72 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.77 Total: 1.03 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.74 Total: -21.83 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 1.24 Total: -41.66 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.02 Total: 19.73 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.22 Total: -2.98 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -38.54 -12.18 -50.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005370453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.689 kcal (2) G-P(sol) polarization free energy of solvation -38.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds