Wall clock time and date at job start Tue Mar 31 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47386 * 2 1 4 4 S 1.81400 * 109.47343 * 120.00702 * 2 1 3 5 5 C 1.76207 * 102.99734 * 292.58680 * 4 2 1 6 6 C 1.38976 * 120.07637 * 275.20548 * 5 4 2 7 7 C 1.38086 * 119.91800 * 179.76235 * 6 5 4 8 8 C 1.38300 * 120.07578 * 0.49163 * 7 6 5 9 9 C 1.38299 * 120.16520 * 359.76264 * 8 7 6 10 10 C 1.38087 * 120.07872 * 0.02562 * 9 8 7 11 11 C 1.50708 * 109.47116 * 240.00291 * 2 1 3 12 12 O 1.21304 * 120.00184 * 265.00078 * 11 2 1 13 13 N 1.34776 * 119.99754 * 85.00335 * 11 2 1 14 14 N 1.40107 * 119.99700 * 180.02562 * 13 11 2 15 15 C 1.28008 * 119.99276 * 184.98330 * 14 13 11 16 16 C 1.51331 * 120.89992 * 355.73013 * 15 14 13 17 17 C 1.53223 * 108.68986 * 128.77414 * 16 15 14 18 18 C 1.52959 * 109.40739 * 54.51900 * 17 16 15 19 19 C 1.52965 * 109.81750 * 296.40752 * 18 17 16 20 20 C 1.51273 * 120.84459 * 175.50972 * 15 14 13 21 21 H 1.09000 * 109.62941 * 111.42124 * 20 15 14 22 22 C 1.52999 * 109.62696 * 351.03572 * 20 15 14 23 23 C 1.50701 * 109.46755 * 65.38396 * 22 20 15 24 24 H 1.08006 * 120.00359 * 359.97438 * 23 22 20 25 25 C 1.37884 * 120.00173 * 180.02562 * 23 22 20 26 26 N 1.31512 * 119.99470 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00135 * 179.72417 * 25 23 22 28 28 H 1.48499 * 109.47277 * 270.27435 * 27 25 23 29 29 H 1.48502 * 109.47419 * 30.27317 * 27 25 23 30 30 H 1.48495 * 109.47484 * 150.27342 * 27 25 23 31 31 H 1.09000 * 109.46878 * 175.39517 * 1 2 3 32 32 H 1.08995 * 109.47139 * 295.39500 * 1 2 3 33 33 H 1.09004 * 109.46764 * 55.39952 * 1 2 3 34 34 H 1.08000 * 120.04073 * 0.02562 * 6 5 4 35 35 H 1.07994 * 119.96094 * 180.23107 * 7 6 5 36 36 H 1.08003 * 119.91886 * 179.73779 * 8 7 6 37 37 H 1.08000 * 119.96273 * 179.97438 * 9 8 7 38 38 H 1.08000 * 120.03777 * 179.97438 * 10 9 8 39 39 H 0.96994 * 120.00343 * 359.97438 * 13 11 2 40 40 H 1.09009 * 109.64115 * 8.95832 * 16 15 14 41 41 H 1.09003 * 109.62115 * 248.57598 * 16 15 14 42 42 H 1.09001 * 109.48498 * 294.53906 * 17 16 15 43 43 H 1.09005 * 109.48780 * 174.50367 * 17 16 15 44 44 H 1.09002 * 109.41732 * 176.29807 * 18 17 16 45 45 H 1.09005 * 109.40775 * 56.50593 * 18 17 16 46 46 H 1.09002 * 109.47441 * 303.61425 * 19 18 17 47 47 H 1.08994 * 109.49231 * 183.57895 * 19 18 17 48 48 H 1.08999 * 109.47597 * 305.38550 * 22 20 15 49 49 H 1.09000 * 109.47355 * 185.38079 * 22 20 15 50 50 H 0.96998 * 120.00313 * 359.73420 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1347 -0.8553 1.4810 5 6 1.6451 0.2207 2.7877 6 6 2.4498 1.2968 3.1423 7 6 2.0606 2.1408 4.1635 8 6 0.8765 1.9102 4.8399 9 6 0.0758 0.8372 4.4934 10 6 0.4565 -0.0084 3.4702 11 6 2.0324 -0.7104 -1.2306 12 8 2.3208 -1.8874 -1.1762 13 7 2.1611 -0.0379 -2.3915 14 7 2.6276 -0.6985 -3.5356 15 6 2.8407 -0.0400 -4.6125 16 6 2.5055 1.4330 -4.7019 17 6 3.7333 2.1850 -5.2260 18 6 4.1865 1.5603 -6.5466 19 6 4.6331 0.1164 -6.3110 20 6 3.4391 -0.7134 -5.8277 21 1 2.6912 -0.7736 -6.6184 22 6 3.9086 -2.1213 -5.4561 23 6 2.7169 -2.9679 -5.0899 24 1 1.7239 -2.5440 -5.1189 25 6 2.8942 -4.2834 -4.7168 26 7 4.1034 -4.7994 -4.6811 27 14 1.4178 -5.3306 -4.2555 28 1 1.1582 -5.2057 -2.7987 29 1 0.2267 -4.8676 -5.0119 30 1 1.6945 -6.7509 -4.5890 31 1 -0.3633 -1.0244 -0.0825 32 1 -0.3633 0.4407 0.9283 33 1 -0.3633 0.5836 -0.8459 34 1 3.3764 1.4753 2.6169 35 1 2.6836 2.9795 4.4371 36 1 0.5766 2.5695 5.6411 37 1 -0.8480 0.6599 5.0240 38 1 -0.1691 -0.8464 3.2004 39 1 1.9301 0.9031 -2.4351 40 1 2.2400 1.8090 -3.7138 41 1 1.6686 1.5771 -5.3854 42 1 4.5400 2.1173 -4.4962 43 1 3.4766 3.2319 -5.3882 44 1 5.0187 2.1353 -6.9528 45 1 3.3588 1.5723 -7.2559 46 1 5.4185 0.0977 -5.5554 47 1 5.0142 -0.3029 -7.2421 48 1 4.5891 -2.0650 -4.6065 49 1 4.4245 -2.5684 -6.3059 50 1 4.8700 -4.2557 -4.9209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005370455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:49 Heat of formation + Delta-G solvation = 18.987024 kcal Electronic energy + Delta-G solvation = -29649.699552 eV Core-core repulsion = 25768.484179 eV Total energy + Delta-G solvation = -3881.215372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.56891 -39.23454 -38.45133 -35.27047 -33.69866 -33.39233 -31.46282 -31.32130 -31.21894 -30.88250 -27.83448 -25.80255 -24.71342 -23.09344 -22.88855 -22.86178 -21.78901 -20.70625 -20.09856 -19.01712 -18.12351 -17.03231 -16.51799 -16.39565 -16.16832 -15.33653 -15.29097 -14.93084 -14.67351 -14.22244 -14.01949 -13.99932 -13.81664 -13.78077 -13.48218 -13.31072 -13.09179 -12.82229 -12.69666 -12.49439 -12.30887 -12.14204 -11.60043 -11.52209 -11.49906 -11.36236 -11.11145 -10.83083 -10.66167 -10.43216 -10.37922 -10.33696 -10.08627 -9.93578 -9.82254 -9.57010 -9.31137 -9.09103 -8.89528 -8.34350 -8.12862 -7.98682 -7.80459 -6.02313 -3.65551 0.55294 1.02702 1.48727 2.33030 2.46898 2.94665 3.26333 3.40962 3.63296 3.75640 3.82925 4.49215 4.53058 4.61371 4.67892 4.72396 4.77516 4.79911 4.84103 4.86364 5.01910 5.08334 5.13707 5.14020 5.33840 5.37841 5.41939 5.45927 5.52248 5.58426 5.64066 5.73756 5.76777 5.85768 5.88528 5.98662 5.98880 6.02309 6.03291 6.09514 6.18560 6.28353 6.44059 6.52651 6.59750 6.74685 6.87938 7.42957 7.54776 7.71475 8.07603 8.48452 8.78160 8.94518 9.21432 10.00972 11.39289 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009808 B = 0.002899 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.264008 B = 9655.138899 C =11739.921905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.103 0.897 4 S -0.069 6.069 5 C -0.132 4.132 6 C -0.073 4.073 7 C -0.131 4.131 8 C -0.097 4.097 9 C -0.131 4.131 10 C -0.067 4.067 11 C 0.542 3.458 12 O -0.465 6.465 13 N -0.597 5.597 14 N -0.168 5.168 15 C 0.099 3.901 16 C -0.120 4.120 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.112 4.112 20 C -0.018 4.018 21 H 0.081 0.919 22 C 0.020 3.980 23 C -0.561 4.561 24 H 0.042 0.958 25 C 0.020 3.980 26 N -0.922 5.922 27 Si 1.063 2.937 28 H -0.286 1.286 29 H -0.294 1.294 30 H -0.289 1.289 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.369 0.631 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.012 0.988 49 H 0.008 0.992 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 21.635 12.293 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.233 4.233 3 H 0.122 0.878 4 S 0.164 5.836 5 C -0.243 4.243 6 C -0.093 4.093 7 C -0.150 4.150 8 C -0.115 4.115 9 C -0.150 4.150 10 C -0.088 4.088 11 C 0.324 3.676 12 O -0.334 6.334 13 N -0.340 5.340 14 N 0.031 4.969 15 C -0.096 4.096 16 C -0.161 4.161 17 C -0.146 4.146 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.039 4.039 21 H 0.099 0.901 22 C -0.017 4.017 23 C -0.599 4.599 24 H 0.060 0.940 25 C -0.183 4.183 26 N -0.560 5.560 27 Si 0.893 3.107 28 H -0.213 1.213 29 H -0.221 1.221 30 H -0.215 1.215 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.208 0.792 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.031 0.969 49 H 0.026 0.974 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.258 17.355 13.437 22.824 hybrid contribution -0.579 4.277 -0.584 4.355 sum -6.837 21.632 12.853 26.074 Atomic orbital electron populations 1.22001 0.90651 1.04443 1.02826 1.23505 1.01158 1.03018 0.95660 0.87849 1.86469 1.75066 1.28159 0.93867 1.22075 0.98685 1.00872 1.02712 1.21695 0.98601 0.92865 0.96179 1.21228 0.97212 0.99925 0.96673 1.21342 0.94365 0.97097 0.98728 1.21249 1.00319 0.95542 0.97940 1.21683 0.94566 0.98214 0.94334 1.19300 0.78859 0.87405 0.82000 1.90879 1.44676 1.14499 1.83306 1.47305 1.66509 1.11570 1.08617 1.75585 1.08704 1.19869 0.92715 1.25430 0.96792 0.91950 0.95449 1.21289 0.99654 0.94101 1.01060 1.21460 0.96940 0.98345 0.97905 1.21550 1.00821 0.96650 0.96754 1.21687 0.98132 0.93903 1.01365 1.20281 0.95516 0.96743 0.91340 0.90128 1.19200 0.97608 0.89127 0.95723 1.21714 0.92685 0.97362 1.48181 0.93982 1.25521 1.01733 0.96512 0.94511 1.70735 0.98700 1.39876 1.46655 0.83634 0.74595 0.75597 0.76855 1.21280 1.22093 1.21506 0.90235 0.91201 0.91419 0.85134 0.85566 0.85742 0.85495 0.84857 0.79164 0.92313 0.89745 0.91965 0.91898 0.92145 0.91808 0.92077 0.91258 0.96932 0.97378 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.13 37.16 0.34 -1.24 16 2 C -0.10 -1.36 3.13 -27.88 -0.09 -1.44 16 3 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 4 S -0.07 -1.00 20.39 -107.50 -2.19 -3.20 16 5 C -0.13 -1.48 5.21 -39.04 -0.20 -1.68 16 6 C -0.07 -0.71 9.79 -39.36 -0.39 -1.09 16 7 C -0.13 -1.02 10.04 -39.61 -0.40 -1.42 16 8 C -0.10 -0.70 10.04 -39.54 -0.40 -1.10 16 9 C -0.13 -1.02 10.04 -39.61 -0.40 -1.42 16 10 C -0.07 -0.65 9.06 -39.37 -0.36 -1.01 16 11 C 0.54 10.25 7.07 -10.98 -0.08 10.18 16 12 O -0.47 -11.67 16.48 5.54 0.09 -11.58 16 13 N -0.60 -10.62 6.15 31.22 0.19 -10.43 16 14 N -0.17 -3.71 8.57 35.89 0.31 -3.40 16 15 C 0.10 1.85 6.17 -78.32 -0.48 1.37 16 16 C -0.12 -1.56 5.91 -27.46 -0.16 -1.72 16 17 C -0.11 -1.22 5.94 -26.64 -0.16 -1.37 16 18 C -0.12 -1.43 5.81 -26.77 -0.16 -1.58 16 19 C -0.11 -1.75 5.24 -26.63 -0.14 -1.89 16 20 C -0.02 -0.36 2.42 -91.37 -0.22 -0.58 16 21 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 22 C 0.02 0.53 3.44 -27.88 -0.10 0.43 16 23 C -0.56 -16.57 7.52 -34.44 -0.26 -16.83 16 24 H 0.04 1.25 7.49 -52.48 -0.39 0.86 16 25 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 26 N -0.92 -30.34 13.65 55.43 0.76 -29.58 16 27 Si 1.06 28.63 29.90 -169.99 -5.08 23.55 16 28 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.66 6.94 -51.93 -0.36 0.30 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.37 4.89 6.15 -182.60 -1.12 3.77 16 40 H 0.06 0.66 5.58 -51.92 -0.29 0.37 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.01 0.36 7.94 -51.93 -0.41 -0.06 16 49 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 50 H 0.26 8.63 7.22 -40.82 -0.29 8.34 16 LS Contribution 417.06 15.07 6.29 6.29 Total: -1.00 -38.66 417.06 -12.23 -50.89 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.85 Total: -0.66 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -3.74 Total: -21.88 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 1.26 Total: -43.40 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 28.63 SS G_CDS: -5.08 Total: 23.55 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.19 Total: -3.20 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -38.66 -12.23 -50.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005370455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.879 kcal (2) G-P(sol) polarization free energy of solvation -38.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds