Wall clock time and date at job start Tue Mar 31 2020 06:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47386 * 2 1 4 4 S 1.81400 * 109.47343 * 120.00702 * 2 1 3 5 5 C 1.76207 * 102.99734 * 292.58680 * 4 2 1 6 6 C 1.38976 * 120.07637 * 275.20548 * 5 4 2 7 7 C 1.38086 * 119.91800 * 179.76235 * 6 5 4 8 8 C 1.38300 * 120.07578 * 0.49163 * 7 6 5 9 9 C 1.38299 * 120.16520 * 359.76264 * 8 7 6 10 10 C 1.38087 * 120.07872 * 0.02562 * 9 8 7 11 11 C 1.50708 * 109.47116 * 240.00291 * 2 1 3 12 12 O 1.21304 * 120.00184 * 265.00078 * 11 2 1 13 13 N 1.34776 * 119.99754 * 85.00335 * 11 2 1 14 14 N 1.40107 * 119.99700 * 180.02562 * 13 11 2 15 15 C 1.28008 * 119.99276 * 184.98330 * 14 13 11 16 16 C 1.51331 * 120.89992 * 355.73013 * 15 14 13 17 17 C 1.53223 * 108.68986 * 128.77414 * 16 15 14 18 18 C 1.52959 * 109.40739 * 54.51900 * 17 16 15 19 19 C 1.52965 * 109.81750 * 296.40752 * 18 17 16 20 20 C 1.51273 * 120.84459 * 175.50972 * 15 14 13 21 21 H 1.09000 * 109.62941 * 111.42124 * 20 15 14 22 22 C 1.52999 * 109.62696 * 351.03572 * 20 15 14 23 23 C 1.50701 * 109.46755 * 65.38396 * 22 20 15 24 24 H 1.08006 * 120.00359 * 359.97438 * 23 22 20 25 25 C 1.37884 * 120.00173 * 180.02562 * 23 22 20 26 26 N 1.31512 * 119.99470 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00135 * 179.72417 * 25 23 22 28 28 H 1.48499 * 109.47277 * 270.27435 * 27 25 23 29 29 H 1.48502 * 109.47419 * 30.27317 * 27 25 23 30 30 H 1.48495 * 109.47484 * 150.27342 * 27 25 23 31 31 H 1.09000 * 109.46878 * 175.39517 * 1 2 3 32 32 H 1.08995 * 109.47139 * 295.39500 * 1 2 3 33 33 H 1.09004 * 109.46764 * 55.39952 * 1 2 3 34 34 H 1.08000 * 120.04073 * 0.02562 * 6 5 4 35 35 H 1.07994 * 119.96094 * 180.23107 * 7 6 5 36 36 H 1.08003 * 119.91886 * 179.73779 * 8 7 6 37 37 H 1.08000 * 119.96273 * 179.97438 * 9 8 7 38 38 H 1.08000 * 120.03777 * 179.97438 * 10 9 8 39 39 H 0.96994 * 120.00343 * 359.97438 * 13 11 2 40 40 H 1.09009 * 109.64115 * 8.95832 * 16 15 14 41 41 H 1.09003 * 109.62115 * 248.57598 * 16 15 14 42 42 H 1.09001 * 109.48498 * 294.53906 * 17 16 15 43 43 H 1.09005 * 109.48780 * 174.50367 * 17 16 15 44 44 H 1.09002 * 109.41732 * 176.29807 * 18 17 16 45 45 H 1.09005 * 109.40775 * 56.50593 * 18 17 16 46 46 H 1.09002 * 109.47441 * 303.61425 * 19 18 17 47 47 H 1.08994 * 109.49231 * 183.57895 * 19 18 17 48 48 H 1.08999 * 109.47597 * 305.38550 * 22 20 15 49 49 H 1.09000 * 109.47355 * 185.38079 * 22 20 15 50 50 H 0.96998 * 120.00313 * 359.73420 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1347 -0.8553 1.4810 5 6 1.6451 0.2207 2.7877 6 6 2.4498 1.2968 3.1423 7 6 2.0606 2.1408 4.1635 8 6 0.8765 1.9102 4.8399 9 6 0.0758 0.8372 4.4934 10 6 0.4565 -0.0084 3.4702 11 6 2.0324 -0.7104 -1.2306 12 8 2.3208 -1.8874 -1.1762 13 7 2.1611 -0.0379 -2.3915 14 7 2.6276 -0.6985 -3.5356 15 6 2.8407 -0.0400 -4.6125 16 6 2.5055 1.4330 -4.7019 17 6 3.7333 2.1850 -5.2260 18 6 4.1865 1.5603 -6.5466 19 6 4.6331 0.1164 -6.3110 20 6 3.4391 -0.7134 -5.8277 21 1 2.6912 -0.7736 -6.6184 22 6 3.9086 -2.1213 -5.4561 23 6 2.7169 -2.9679 -5.0899 24 1 1.7239 -2.5440 -5.1189 25 6 2.8942 -4.2834 -4.7168 26 7 4.1034 -4.7994 -4.6811 27 14 1.4178 -5.3306 -4.2555 28 1 1.1582 -5.2057 -2.7987 29 1 0.2267 -4.8676 -5.0119 30 1 1.6945 -6.7509 -4.5890 31 1 -0.3633 -1.0244 -0.0825 32 1 -0.3633 0.4407 0.9283 33 1 -0.3633 0.5836 -0.8459 34 1 3.3764 1.4753 2.6169 35 1 2.6836 2.9795 4.4371 36 1 0.5766 2.5695 5.6411 37 1 -0.8480 0.6599 5.0240 38 1 -0.1691 -0.8464 3.2004 39 1 1.9301 0.9031 -2.4351 40 1 2.2400 1.8090 -3.7138 41 1 1.6686 1.5771 -5.3854 42 1 4.5400 2.1173 -4.4962 43 1 3.4766 3.2319 -5.3882 44 1 5.0187 2.1353 -6.9528 45 1 3.3588 1.5723 -7.2559 46 1 5.4185 0.0977 -5.5554 47 1 5.0142 -0.3029 -7.2421 48 1 4.5891 -2.0650 -4.6065 49 1 4.4245 -2.5684 -6.3059 50 1 4.8700 -4.2557 -4.9209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005370455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:47 Heat of formation + Delta-G solvation = -4.813576 kcal Electronic energy + Delta-G solvation = -29650.731623 eV Core-core repulsion = 25768.484179 eV Total energy + Delta-G solvation = -3882.247444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.03128 -39.88497 -39.85722 -36.74373 -35.64109 -34.63086 -33.16468 -32.32727 -31.95383 -31.81764 -29.34143 -27.53576 -25.84715 -24.80551 -23.80013 -23.52506 -23.21850 -21.98035 -21.54896 -20.35836 -19.09648 -18.74061 -18.18290 -17.74032 -17.08545 -16.49636 -16.09615 -15.96516 -15.90206 -15.72377 -15.53059 -15.36642 -14.92458 -14.91889 -14.70840 -14.39613 -14.19135 -14.09586 -13.93724 -13.71701 -13.43430 -13.21431 -13.16742 -13.05184 -12.76191 -12.48021 -12.33902 -12.24148 -12.12453 -12.01105 -11.96927 -11.65898 -11.56985 -11.37671 -11.29389 -11.09492 -10.56848 -10.45875 -10.28764 -9.95328 -9.83428 -9.69653 -8.93446 -8.52795 -6.14127 -0.24144 0.39125 0.55869 0.93099 1.40317 1.48818 1.55779 1.62876 1.66998 1.85429 2.58829 2.74879 3.27319 3.33497 3.56201 3.65870 3.72455 3.80280 3.92416 3.97860 4.04001 4.05222 4.19852 4.22146 4.40212 4.45414 4.48561 4.49086 4.50539 4.52181 4.54257 4.70351 4.75374 4.91915 4.95678 4.98452 5.00045 5.05091 5.08414 5.20037 5.23589 5.32025 5.36959 5.39468 5.40558 5.49228 5.50790 5.61843 5.92674 6.08722 6.13505 6.34570 6.64874 6.75618 7.57018 7.59277 8.89405 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009808 B = 0.002899 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.264008 B = 9655.138899 C =11739.921905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 H 0.137 0.863 4 S -0.145 6.145 5 C -0.136 4.136 6 C -0.086 4.086 7 C -0.128 4.128 8 C -0.091 4.091 9 C -0.128 4.128 10 C -0.081 4.081 11 C 0.537 3.463 12 O -0.542 6.542 13 N -0.580 5.580 14 N -0.249 5.249 15 C 0.106 3.894 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.113 4.113 19 C -0.107 4.107 20 C -0.020 4.020 21 H 0.088 0.912 22 C 0.026 3.974 23 C -0.548 4.548 24 H 0.037 0.963 25 C -0.042 4.042 26 N -0.953 5.953 27 Si 1.103 2.897 28 H -0.300 1.300 29 H -0.264 1.264 30 H -0.278 1.278 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.131 0.869 39 H 0.393 0.607 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.044 0.956 47 H 0.073 0.927 48 H -0.026 1.026 49 H -0.008 1.008 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 26.598 12.906 30.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.210 4.210 3 H 0.155 0.845 4 S 0.088 5.912 5 C -0.247 4.247 6 C -0.107 4.107 7 C -0.148 4.148 8 C -0.109 4.109 9 C -0.148 4.148 10 C -0.102 4.102 11 C 0.322 3.678 12 O -0.416 6.416 13 N -0.325 5.325 14 N -0.051 5.051 15 C -0.088 4.088 16 C -0.155 4.155 17 C -0.142 4.142 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.041 4.041 21 H 0.106 0.894 22 C -0.011 4.011 23 C -0.587 4.587 24 H 0.055 0.945 25 C -0.238 4.238 26 N -0.593 5.593 27 Si 0.927 3.073 28 H -0.228 1.228 29 H -0.189 1.189 30 H -0.203 1.203 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.170 0.830 38 H 0.148 0.852 39 H 0.236 0.764 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.071 0.929 43 H 0.121 0.879 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.091 0.909 48 H -0.008 1.008 49 H 0.010 0.990 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.484 22.386 13.998 27.732 hybrid contribution 0.137 2.832 -0.723 2.926 sum -8.347 25.218 13.275 29.696 Atomic orbital electron populations 1.21990 0.88715 1.03606 1.04943 1.23403 1.02330 1.03207 0.92089 0.84524 1.86755 1.76126 1.31350 0.96959 1.21847 1.00021 1.01047 1.01814 1.21786 0.98622 0.92986 0.97256 1.21539 0.97719 0.99928 0.95566 1.21764 0.93536 0.96842 0.98732 1.21552 1.01254 0.94968 0.97003 1.21754 0.94259 0.98905 0.95233 1.20316 0.77265 0.86846 0.83329 1.90837 1.48198 1.17938 1.84626 1.47020 1.65563 1.12487 1.07437 1.75457 1.11633 1.23231 0.94818 1.25702 0.94385 0.94999 0.93705 1.21418 1.01358 0.89693 1.03036 1.21498 0.95600 1.00113 0.97032 1.21533 1.02336 0.93467 0.97700 1.21637 0.95728 0.96417 1.00753 1.20237 0.97478 0.93814 0.92538 0.89433 1.19044 0.95534 0.93087 0.93402 1.22017 0.93486 0.97321 1.45859 0.94478 1.26846 1.03215 0.98871 0.94822 1.70859 0.99095 1.39957 1.49418 0.83129 0.73077 0.75066 0.75985 1.22776 1.18895 1.20346 0.92611 0.88876 0.89273 0.85199 0.83040 0.82560 0.83023 0.85153 0.76394 0.90422 0.87434 0.92922 0.87890 0.89574 0.90266 0.93694 0.90880 1.00751 0.98984 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.13 71.98 0.66 -2.24 16 2 C -0.08 -2.11 3.13 29.85 0.09 -2.02 16 3 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 4 S -0.15 -4.49 20.39 -56.49 -1.15 -5.64 16 5 C -0.14 -2.99 5.21 22.62 0.12 -2.87 16 6 C -0.09 -1.55 9.79 22.41 0.22 -1.33 16 7 C -0.13 -1.60 10.04 22.25 0.22 -1.38 16 8 C -0.09 -0.95 10.04 22.30 0.22 -0.73 16 9 C -0.13 -1.62 10.04 22.25 0.22 -1.40 16 10 C -0.08 -1.48 9.06 22.41 0.20 -1.28 16 11 C 0.54 21.19 7.07 87.66 0.62 21.81 16 12 O -0.54 -29.33 16.48 -3.10 -0.05 -29.39 16 13 N -0.58 -20.81 6.15 -173.51 -1.07 -21.88 16 14 N -0.25 -11.33 8.57 -40.28 -0.35 -11.68 16 15 C 0.11 3.93 6.17 46.91 0.29 4.22 16 16 C -0.11 -2.58 5.91 30.12 0.18 -2.40 16 17 C -0.10 -1.89 5.94 30.66 0.18 -1.71 16 18 C -0.11 -2.24 5.81 30.57 0.18 -2.06 16 19 C -0.11 -3.23 5.24 30.66 0.16 -3.07 16 20 C -0.02 -0.80 2.42 -11.28 -0.03 -0.82 16 21 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 22 C 0.03 1.45 3.44 29.85 0.10 1.55 16 23 C -0.55 -33.84 7.52 25.60 0.19 -33.65 16 24 H 0.04 2.28 7.49 -2.91 -0.02 2.26 16 25 C -0.04 -2.74 5.46 84.66 0.46 -2.27 16 26 N -0.95 -66.21 13.65 21.45 0.29 -65.92 16 27 Si 1.10 59.96 29.90 68.60 2.05 62.02 16 28 H -0.30 -16.94 7.11 99.48 0.71 -16.23 16 29 H -0.26 -12.92 7.11 99.48 0.71 -12.22 16 30 H -0.28 -14.50 7.11 99.48 0.71 -13.79 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.60 6.94 -2.39 -0.02 1.58 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.39 9.75 6.15 -213.32 -1.31 8.43 16 40 H 0.08 1.44 5.58 -2.38 -0.01 1.43 16 41 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H -0.03 -1.61 7.94 -2.39 -0.02 -1.63 16 49 H -0.01 -0.46 8.01 -2.39 -0.02 -0.48 16 50 H 0.25 17.55 7.22 -92.71 -0.67 16.88 16 Total: -1.00 -94.75 417.06 3.75 -91.00 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -0.28 Total: 13.13 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 4.30 Total: -31.66 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -1.12 Total: -99.47 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.39 kcal Atomic # 14 Polarization: 59.96 SS G_CDS: 2.05 Total: 62.02 kcal Atomic # 16 Polarization: -4.49 SS G_CDS: -1.15 Total: -5.64 kcal Total: -94.75 3.75 -91.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005370455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.190 kcal (2) G-P(sol) polarization free energy of solvation -94.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds