Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47225 * 2 1 4 4 C 1.52996 * 109.47358 * 239.99469 * 2 1 3 5 5 O 1.45199 * 109.46510 * 119.99643 * 2 1 3 6 6 C 1.34627 * 116.99915 * 60.00491 * 5 2 1 7 7 O 1.21467 * 120.00289 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99651 * 179.97438 * 6 5 2 9 9 N 1.40093 * 120.00266 * 359.97438 * 8 6 5 10 10 C 1.31088 * 119.99927 * 186.13475 * 9 8 6 11 11 C 1.48159 * 127.52249 * 6.30612 * 10 9 8 12 12 C 1.39035 * 133.21350 * 359.97438 * 11 10 9 13 13 C 1.38061 * 119.73201 * 180.02562 * 12 11 10 14 14 C 1.38473 * 120.07412 * 359.95451 * 13 12 11 15 15 C 1.38017 * 120.61602 * 0.02562 * 14 13 12 16 16 C 1.39070 * 120.13352 * 0.02562 * 15 14 13 17 17 N 1.39053 * 131.63295 * 179.97438 * 16 15 14 18 18 C 1.46497 * 124.27073 * 359.97438 * 17 16 15 19 19 C 1.53005 * 109.46476 * 90.00760 * 18 17 16 20 20 C 1.50705 * 109.47000 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99986 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00310 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00210 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99591 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47122 * 269.99544 * 24 22 20 26 26 H 1.48497 * 109.47271 * 29.99624 * 24 22 20 27 27 H 1.48498 * 109.46957 * 150.00185 * 24 22 20 28 28 C 1.34386 * 111.45217 * 180.25642 * 17 16 15 29 29 O 1.21686 * 126.05875 * 179.74955 * 28 17 16 30 30 H 1.09003 * 109.47285 * 300.00198 * 1 2 3 31 31 H 1.09004 * 109.46837 * 60.00431 * 1 2 3 32 32 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47078 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47030 * 300.00009 * 3 2 1 35 35 H 1.09000 * 109.46649 * 59.99843 * 3 2 1 36 36 H 1.08997 * 109.47459 * 300.00634 * 4 2 1 37 37 H 1.09009 * 109.46846 * 60.00638 * 4 2 1 38 38 H 1.09000 * 109.47391 * 179.97438 * 4 2 1 39 39 H 0.97005 * 119.99455 * 179.97438 * 8 6 5 40 40 H 1.07998 * 120.13613 * 359.97438 * 12 11 10 41 41 H 1.08003 * 119.96053 * 179.97438 * 13 12 11 42 42 H 1.08001 * 119.69640 * 180.02562 * 14 13 12 43 43 H 1.08004 * 119.93914 * 180.02562 * 15 14 13 44 44 H 1.09001 * 109.47866 * 330.01019 * 18 17 16 45 45 H 1.08998 * 109.47363 * 209.99883 * 18 17 16 46 46 H 1.09001 * 109.47332 * 59.99891 * 19 18 17 47 47 H 1.08999 * 109.47052 * 299.99289 * 19 18 17 48 48 H 0.96998 * 119.99843 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9722 1.3384 7 8 0.9511 -2.5092 0.5043 8 7 2.0678 -2.6655 2.4168 9 7 2.8768 -2.0463 3.3785 10 6 3.3799 -2.7503 4.3632 11 6 3.3108 -4.2184 4.5504 12 6 2.7393 -5.2466 3.8094 13 6 2.8436 -6.5499 4.2527 14 6 3.5158 -6.8306 5.4304 15 6 4.0868 -5.8166 6.1726 16 6 3.9911 -4.4976 5.7425 17 7 4.4658 -3.3107 6.2898 18 6 5.2257 -3.2244 7.5393 19 6 6.7205 -3.3460 7.2364 20 6 7.5024 -3.2565 8.5217 21 1 6.9848 -3.1264 9.4607 22 6 8.8783 -3.3418 8.4990 23 7 9.5607 -3.2632 9.6205 24 14 9.7734 -3.5676 6.8750 25 1 9.9269 -5.0172 6.5917 26 1 8.9907 -2.9306 5.7856 27 1 11.1142 -2.9346 6.9566 28 6 4.1342 -2.2523 5.5310 29 8 4.4100 -1.0901 5.7630 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6768 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.8069 -3.5932 2.5270 40 1 2.2151 -5.0267 2.8911 41 1 2.4007 -7.3515 3.6803 42 1 3.5941 -7.8524 5.7714 43 1 4.6089 -6.0480 7.0893 44 1 4.9231 -4.0324 8.2054 45 1 5.0290 -2.2654 8.0187 46 1 7.0232 -2.5379 6.5704 47 1 6.9173 -4.3049 6.7571 48 1 10.5286 -3.3236 9.6045 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005669243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = -22.553035 kcal Electronic energy + Delta-G solvation = -31825.465648 eV Core-core repulsion = 27461.581660 eV Total energy + Delta-G solvation = -4363.883988 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.77408 -41.11474 -38.52983 -38.00332 -36.79861 -36.06085 -34.42582 -33.80514 -32.59148 -31.02504 -30.82139 -29.10456 -27.70145 -27.69377 -26.78403 -24.48846 -23.45172 -22.57919 -21.99622 -21.23844 -20.14647 -19.96576 -18.38973 -18.08063 -17.22260 -17.12356 -16.65055 -16.56520 -16.03139 -15.84300 -15.66795 -15.02531 -14.75606 -14.41800 -14.32945 -14.19244 -13.97022 -13.83242 -13.30295 -13.22822 -13.08925 -12.77780 -12.76922 -12.50100 -12.41815 -12.24441 -12.20662 -11.99135 -11.84175 -11.73664 -11.73414 -11.16931 -11.05987 -10.97271 -10.69939 -10.56761 -10.31148 -10.19907 -10.07241 -9.88922 -9.87047 -9.40728 -8.87036 -8.65771 -7.96448 -6.16485 -4.17343 0.00727 1.03605 1.44671 1.57080 2.39324 2.50095 3.00457 3.11606 3.23707 3.32891 3.37777 3.53497 3.76677 4.30769 4.35723 4.37867 4.39639 4.45022 4.58163 4.64941 4.73010 5.04123 5.12420 5.17417 5.20578 5.22777 5.29081 5.40281 5.41386 5.47504 5.52609 5.52636 5.59349 5.71060 5.84594 5.89718 5.94509 5.97312 5.99544 6.02680 6.21641 6.28617 6.37063 6.48805 6.54653 6.83633 7.01747 7.04851 7.23582 7.57557 7.84919 7.94752 8.34621 8.84795 9.44410 10.96025 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.002588 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.795096 B =10818.607554 C =12244.966571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.129 3.871 3 C -0.141 4.141 4 C -0.185 4.185 5 O -0.334 6.334 6 C 0.684 3.316 7 O -0.551 6.551 8 N -0.552 5.552 9 N -0.137 5.137 10 C 0.096 3.904 11 C -0.178 4.178 12 C -0.053 4.053 13 C -0.149 4.149 14 C -0.059 4.059 15 C -0.134 4.134 16 C 0.195 3.805 17 N -0.537 5.537 18 C 0.123 3.877 19 C -0.026 4.026 20 C -0.525 4.525 21 H 0.077 0.923 22 C 0.074 3.926 23 N -0.896 5.896 24 Si 0.876 3.124 25 H -0.276 1.276 26 H -0.266 1.266 27 H -0.285 1.285 28 C 0.583 3.417 29 O -0.459 6.459 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.413 0.587 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.024 0.976 47 H 0.018 0.982 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.880 -2.683 -17.989 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.092 3.908 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.247 6.247 6 C 0.439 3.561 7 O -0.437 6.437 8 N -0.308 5.308 9 N 0.049 4.951 10 C -0.096 4.096 11 C -0.184 4.184 12 C -0.074 4.074 13 C -0.169 4.169 14 C -0.079 4.079 15 C -0.155 4.155 16 C 0.094 3.906 17 N -0.257 5.257 18 C 0.004 3.996 19 C -0.064 4.064 20 C -0.563 4.563 21 H 0.095 0.905 22 C -0.129 4.129 23 N -0.534 5.534 24 Si 0.703 3.297 25 H -0.201 1.201 26 H -0.190 1.190 27 H -0.211 1.211 28 C 0.366 3.634 29 O -0.327 6.327 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.262 0.738 40 H 0.135 0.865 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.043 0.957 47 H 0.036 0.964 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.785 -0.849 -18.539 26.406 hybrid contribution 0.573 -1.401 -0.575 1.619 sum -18.212 -2.250 -19.113 26.496 Atomic orbital electron populations 1.22532 0.93831 1.04902 1.02882 1.22243 0.94509 0.92047 0.81959 1.21857 1.02650 0.92046 1.03258 1.22536 1.01930 1.03194 0.96541 1.86510 1.70178 1.22139 1.45876 1.17543 0.77466 0.81295 0.79764 1.90988 1.40654 1.70869 1.41218 1.46222 1.49336 1.14693 1.20592 1.75461 1.00849 1.22760 0.96058 1.23636 0.99163 0.91391 0.95374 1.19395 1.07998 0.91962 0.99059 1.20444 0.97475 0.91987 0.97492 1.20953 1.02410 0.95657 0.97834 1.21082 0.94235 0.99063 0.93525 1.20543 1.03468 0.88907 1.02543 1.18349 0.92569 0.88243 0.91408 1.45850 1.50849 1.04339 1.24674 1.22088 0.92910 1.04001 0.80558 1.19942 0.90318 0.97259 0.98905 1.20840 0.91499 1.51455 0.92533 0.90511 1.24935 0.97488 0.94215 0.96217 1.69888 1.07344 1.49878 1.26281 0.86826 0.79380 0.78693 0.84767 1.20123 1.19011 1.21087 1.17353 0.79188 0.84954 0.81895 1.90923 1.52351 1.16369 1.73017 0.91831 0.90850 0.89621 0.91157 0.90029 0.91130 0.89623 0.90825 0.91858 0.73827 0.86517 0.84900 0.84559 0.84075 0.89416 0.88940 0.95733 0.96381 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 2 C 0.13 1.28 1.13 -90.62 -0.10 1.18 16 3 C -0.14 -1.11 8.85 37.16 0.33 -0.78 16 4 C -0.18 -1.68 8.37 37.16 0.31 -1.37 16 5 O -0.33 -4.39 9.49 -40.29 -0.38 -4.77 16 6 C 0.68 9.03 8.11 54.06 0.44 9.46 16 7 O -0.55 -7.38 12.71 -19.24 -0.24 -7.63 16 8 N -0.55 -7.01 6.23 27.59 0.17 -6.84 16 9 N -0.14 -2.07 11.21 34.74 0.39 -1.68 16 10 C 0.10 1.47 7.55 -80.26 -0.61 0.86 16 11 C -0.18 -2.31 6.15 -104.84 -0.64 -2.96 16 12 C -0.05 -0.53 9.43 -39.35 -0.37 -0.90 16 13 C -0.15 -1.24 10.04 -39.56 -0.40 -1.64 16 14 C -0.06 -0.53 10.01 -39.58 -0.40 -0.92 16 15 C -0.13 -1.55 9.78 -39.35 -0.39 -1.93 16 16 C 0.20 2.75 6.73 -83.59 -0.56 2.18 16 17 N -0.54 -9.02 2.73 -114.49 -0.31 -9.33 16 18 C 0.12 2.26 5.72 -4.04 -0.02 2.24 16 19 C -0.03 -0.59 4.37 -27.88 -0.12 -0.71 16 20 C -0.52 -14.14 9.66 -34.44 -0.33 -14.48 16 21 H 0.08 2.18 7.99 -52.48 -0.42 1.76 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 24 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.58 10.45 8.06 -12.59 -0.10 10.35 16 29 O -0.46 -9.59 17.70 5.20 0.09 -9.50 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.90 5.88 -51.93 -0.31 0.60 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.92 5.88 -51.93 -0.31 0.61 16 37 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.41 4.33 5.07 -182.60 -0.92 3.41 16 40 H 0.12 0.93 5.50 -52.49 -0.29 0.64 16 41 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.14 1.57 7.80 -52.48 -0.41 1.16 16 44 H 0.09 1.42 7.74 -51.93 -0.40 1.02 16 45 H 0.09 1.76 7.96 -51.93 -0.41 1.35 16 46 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 47 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -32.91 400.09 -8.11 -41.03 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.21 Total: 0.69 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.75 Total: 1.25 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 1.02 Total: -43.77 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.54 Total: -21.90 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.91 -8.11 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005669243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.473 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds