Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35952 * 116.99655 * 2 1 4 4 C 1.38482 * 119.99419 * 0.02562 * 3 2 1 5 5 C 1.38669 * 120.47767 * 180.02562 * 4 3 2 6 6 C 1.37610 * 120.46412 * 359.97438 * 5 4 3 7 7 C 1.40327 * 119.96592 * 0.02562 * 6 5 4 8 8 C 1.46135 * 120.23512 * 179.97438 * 7 6 5 9 9 C 1.38283 * 120.00199 * 49.32603 * 8 7 6 10 10 C 1.47599 * 121.48251 * 189.35262 * 9 8 7 11 11 O 1.21639 * 120.91361 * 359.97438 * 10 9 8 12 12 N 1.34906 * 118.17255 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.22977 * 179.72213 * 12 10 9 14 14 C 1.34026 * 121.53579 * 0.02562 * 12 10 9 15 15 O 1.21536 * 118.22668 * 179.97438 * 14 12 10 16 16 N 1.34034 * 123.54547 * 359.97438 * 14 12 10 17 17 C 1.46495 * 119.22968 * 180.02562 * 16 14 12 18 18 C 1.34898 * 121.53306 * 0.02562 * 16 14 12 19 19 O 1.21645 * 120.91195 * 180.02562 * 18 16 14 20 20 C 1.39271 * 119.98642 * 180.28236 * 3 2 1 21 21 O 1.35439 * 120.23012 * 359.97438 * 20 3 2 22 22 C 1.34690 * 117.00278 * 270.23701 * 21 20 3 23 23 H 1.07998 * 119.99721 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00010 * 179.97438 * 22 21 20 25 25 N 1.31436 * 120.00192 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99633 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47464 * 90.00324 * 26 24 22 28 28 H 1.48502 * 109.46909 * 210.00136 * 26 24 22 29 29 H 1.48504 * 109.47632 * 330.00059 * 26 24 22 30 30 H 1.09003 * 109.46776 * 299.99918 * 1 2 3 31 31 H 1.09003 * 109.47050 * 59.99442 * 1 2 3 32 32 H 1.08994 * 109.47138 * 180.02562 * 1 2 3 33 33 H 1.07997 * 119.75994 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.76890 * 179.97438 * 5 4 3 35 35 H 1.08004 * 120.02205 * 179.97438 * 6 5 4 36 36 H 1.08007 * 119.99959 * 229.31855 * 8 7 6 37 37 H 1.09005 * 109.47120 * 90.00463 * 13 12 10 38 38 H 1.09008 * 109.47023 * 209.99883 * 13 12 10 39 39 H 1.08998 * 109.47387 * 329.99796 * 13 12 10 40 40 H 1.09004 * 109.47305 * 269.97763 * 17 16 14 41 41 H 1.09000 * 109.47427 * 29.97825 * 17 16 14 42 42 H 1.09006 * 109.47223 * 149.98470 * 17 16 14 43 43 H 0.97000 * 120.00293 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2918 2.3727 0.0005 5 6 1.9108 3.6135 0.0000 6 6 3.2836 3.7083 -0.0005 7 6 4.0666 2.5438 -0.0011 8 6 5.5250 2.6377 -0.0022 9 6 6.1656 3.4610 0.9055 10 6 7.6116 3.7399 0.8063 11 8 8.2831 3.2497 -0.0816 12 7 8.1683 4.5525 1.7281 13 6 9.6028 4.8401 1.6553 14 6 7.4405 5.0980 2.7126 15 8 8.0037 5.8209 3.5109 16 7 6.1252 4.8894 2.8642 17 6 5.4220 5.5348 3.9756 18 6 5.4340 4.0991 2.0173 19 8 4.2402 3.9179 2.1653 20 6 3.4370 1.2840 -0.0059 21 8 4.1790 0.1510 -0.0112 22 6 4.5151 -0.3655 1.1865 23 1 4.1940 0.1231 2.0945 24 6 5.2742 -1.5257 1.2537 25 7 5.6653 -2.1201 0.1486 26 14 5.7396 -2.2423 2.9147 27 1 4.6915 -3.1988 3.3525 28 1 7.0400 -2.9506 2.8014 29 1 5.8577 -1.1472 3.9109 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2135 2.3114 0.0005 34 1 1.3113 4.5119 0.0000 35 1 3.7583 4.6785 -0.0014 36 1 6.1025 2.0639 -0.7120 37 1 9.7654 5.7237 1.0380 38 1 9.9884 5.0219 2.6585 39 1 10.1222 3.9888 1.2152 40 1 5.4450 4.8820 4.8482 41 1 5.9107 6.4791 4.2154 42 1 4.3870 5.7234 3.6902 43 1 6.1954 -2.9311 0.1955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005879196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = -74.364280 kcal Electronic energy + Delta-G solvation = -33341.038716 eV Core-core repulsion = 28741.356267 eV Total energy + Delta-G solvation = -4599.682449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.125 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.29921 -39.95871 -39.38810 -38.97698 -37.44527 -36.27806 -35.33817 -35.20430 -33.50648 -32.06300 -30.03320 -29.26472 -28.12437 -26.92282 -26.84301 -25.35978 -24.74964 -22.93320 -22.78800 -21.73469 -20.56880 -19.47120 -18.19542 -17.61832 -17.31982 -17.28945 -16.76151 -16.31478 -15.95191 -15.71067 -15.29763 -15.24071 -15.20585 -14.84734 -14.68215 -14.25594 -14.04559 -13.96646 -13.75324 -13.25525 -13.22118 -13.06264 -12.93262 -12.48044 -12.40962 -12.09500 -11.92449 -11.84894 -11.52636 -11.15335 -11.10206 -11.07031 -10.90069 -10.50149 -10.41330 -10.25610 -9.99118 -9.85778 -9.75450 -9.67133 -9.61574 -8.31922 -7.98869 -7.46554 -6.17215 -3.83775 0.28998 1.65827 1.90851 1.95882 2.22401 2.24749 2.89333 3.21634 3.24909 3.28308 3.56020 3.73924 3.92763 4.00591 4.28328 4.68082 5.01725 5.07051 5.14542 5.16433 5.17019 5.22084 5.25734 5.31137 5.35548 5.36684 5.41419 5.42425 5.50432 5.61413 5.63210 5.63228 5.69926 5.73560 5.98080 6.06461 6.36837 6.51316 6.64256 6.69926 6.82349 7.09317 7.22405 7.31923 7.33151 7.54590 7.89626 7.91403 8.19975 9.25523 9.92486 11.01223 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.004536 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.656201 B = 6171.034762 C = 7820.433793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.290 6.290 3 C 0.085 3.915 4 C -0.177 4.177 5 C -0.122 4.122 6 C -0.060 4.060 7 C -0.122 4.122 8 C 0.185 3.815 9 C -0.313 4.313 10 C 0.572 3.428 11 O -0.485 6.485 12 N -0.566 5.566 13 C 0.082 3.918 14 C 0.713 3.287 15 O -0.541 6.541 16 N -0.566 5.566 17 C 0.083 3.917 18 C 0.563 3.437 19 O -0.464 6.464 20 C 0.161 3.839 21 O -0.224 6.224 22 C -0.361 4.361 23 H 0.070 0.930 24 C 0.036 3.964 25 N -0.872 5.872 26 Si 0.926 3.074 27 H -0.276 1.276 28 H -0.279 1.279 29 H -0.273 1.273 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.163 0.837 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 14.419 2.247 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.203 6.203 3 C 0.039 3.961 4 C -0.196 4.196 5 C -0.140 4.140 6 C -0.078 4.078 7 C -0.124 4.124 8 C 0.165 3.835 9 C -0.320 4.320 10 C 0.365 3.635 11 O -0.358 6.358 12 N -0.311 5.311 13 C -0.059 4.059 14 C 0.416 3.584 15 O -0.415 6.415 16 N -0.311 5.311 17 C -0.058 4.058 18 C 0.356 3.644 19 O -0.336 6.336 20 C 0.114 3.886 21 O -0.136 6.136 22 C -0.437 4.437 23 H 0.088 0.912 24 C -0.165 4.165 25 N -0.512 5.512 26 Si 0.752 3.248 27 H -0.202 1.202 28 H -0.205 1.205 29 H -0.197 1.197 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.181 0.819 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.846 13.960 2.060 14.395 hybrid contribution -0.120 -0.273 1.086 1.126 sum -2.966 13.686 3.147 14.353 Atomic orbital electron populations 1.22998 0.80034 1.03443 1.00410 1.86342 1.19648 1.25794 1.88479 1.19557 0.92091 0.84655 0.99759 1.21199 0.99454 0.92161 1.06813 1.20471 0.94059 0.96456 1.02999 1.20706 0.93316 0.95750 0.98061 1.19056 0.91761 0.93330 1.08205 1.23218 0.93325 0.79940 0.87037 1.21650 0.92664 1.14047 1.03597 1.18380 0.87432 0.76998 0.80688 1.90859 1.63907 1.48412 1.32622 1.45873 1.12209 1.45996 1.26992 1.21911 0.76450 1.03023 1.04552 1.15410 0.81397 0.80246 0.81350 1.90944 1.68818 1.38997 1.42743 1.45965 1.08004 1.46662 1.30477 1.21881 0.97899 0.98782 0.87265 1.18472 0.87033 0.77379 0.81558 1.90939 1.13099 1.57616 1.71936 1.18597 0.87223 0.87616 0.95159 1.83750 1.66626 1.33741 1.29481 1.20923 1.32408 1.09023 0.81341 0.91236 1.25005 0.97358 0.95873 0.98303 1.69955 1.36161 1.18904 1.26172 0.85941 0.78223 0.79322 0.81289 1.20202 1.20458 1.19747 0.93307 0.93302 0.88662 0.85853 0.86188 0.86746 0.81928 0.90944 0.88950 0.88836 0.90987 0.89082 0.88923 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.29 -5.99 10.28 -34.11 -0.35 -6.35 16 3 C 0.09 1.74 6.70 -39.11 -0.26 1.48 16 4 C -0.18 -2.86 9.03 -39.33 -0.36 -3.21 16 5 C -0.12 -1.82 10.01 -39.65 -0.40 -2.22 16 6 C -0.06 -0.97 6.71 -39.03 -0.26 -1.24 16 7 C -0.12 -2.37 4.62 -104.96 -0.49 -2.86 16 8 C 0.18 3.44 8.98 -36.40 -0.33 3.12 16 9 C -0.31 -5.38 5.94 -102.24 -0.61 -5.99 16 10 C 0.57 9.44 7.64 -12.38 -0.09 9.34 16 11 O -0.48 -8.86 16.16 5.24 0.08 -8.77 16 12 N -0.57 -8.16 2.94 -129.69 -0.38 -8.55 16 13 C 0.08 0.91 10.05 59.84 0.60 1.51 16 14 C 0.71 10.48 8.07 -88.25 -0.71 9.77 16 15 O -0.54 -8.31 14.93 5.33 0.08 -8.23 16 16 N -0.57 -8.13 2.94 -129.69 -0.38 -8.51 16 17 C 0.08 0.92 10.05 59.84 0.60 1.53 16 18 C 0.56 9.25 7.14 -12.39 -0.09 9.16 16 19 O -0.46 -8.27 12.06 5.24 0.06 -8.21 16 20 C 0.16 3.68 5.63 -38.21 -0.22 3.46 16 21 O -0.22 -6.16 8.92 -13.13 -0.12 -6.28 16 22 C -0.36 -10.21 9.81 30.94 0.30 -9.91 16 23 H 0.07 1.95 7.76 -52.49 -0.41 1.54 16 24 C 0.04 1.01 5.50 -17.51 -0.10 0.91 16 25 N -0.87 -26.09 13.67 55.49 0.76 -25.33 16 26 Si 0.93 21.74 29.55 -169.99 -5.02 16.72 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 29 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 30 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 31 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.12 1.60 6.26 -52.49 -0.33 1.27 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.11 1.63 7.46 -52.48 -0.39 1.24 16 36 H 0.16 3.08 7.79 -52.48 -0.41 2.67 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.95 7.27 -51.92 -0.38 0.58 16 39 H 0.09 1.02 7.40 -51.93 -0.38 0.64 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.90 7.27 -51.93 -0.38 0.53 16 42 H 0.09 0.96 7.40 -51.93 -0.38 0.57 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -34.99 373.20 -5.73 -40.72 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.68 Total: 0.95 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: -1.40 Total: 16.22 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.01 Total: -42.39 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.24 Total: -37.84 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.99 -5.73 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005879196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.648 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds