Wall clock time and date at job start Tue Mar 31 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35952 * 116.99655 * 2 1 4 4 C 1.38482 * 119.99419 * 0.02562 * 3 2 1 5 5 C 1.38669 * 120.47767 * 180.02562 * 4 3 2 6 6 C 1.37610 * 120.46412 * 359.97438 * 5 4 3 7 7 C 1.40327 * 119.96592 * 0.02562 * 6 5 4 8 8 C 1.46135 * 120.23512 * 179.97438 * 7 6 5 9 9 C 1.38283 * 120.00199 * 49.32603 * 8 7 6 10 10 C 1.47599 * 121.48251 * 189.35262 * 9 8 7 11 11 O 1.21639 * 120.91361 * 359.97438 * 10 9 8 12 12 N 1.34906 * 118.17255 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.22977 * 179.72213 * 12 10 9 14 14 C 1.34026 * 121.53579 * 0.02562 * 12 10 9 15 15 O 1.21536 * 118.22668 * 179.97438 * 14 12 10 16 16 N 1.34034 * 123.54547 * 359.97438 * 14 12 10 17 17 C 1.46495 * 119.22968 * 180.02562 * 16 14 12 18 18 C 1.34898 * 121.53306 * 0.02562 * 16 14 12 19 19 O 1.21645 * 120.91195 * 180.02562 * 18 16 14 20 20 C 1.39271 * 119.98642 * 180.28236 * 3 2 1 21 21 O 1.35439 * 120.23012 * 359.97438 * 20 3 2 22 22 C 1.34690 * 117.00278 * 270.23701 * 21 20 3 23 23 H 1.07998 * 119.99721 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00010 * 179.97438 * 22 21 20 25 25 N 1.31436 * 120.00192 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99633 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47464 * 90.00324 * 26 24 22 28 28 H 1.48502 * 109.46909 * 210.00136 * 26 24 22 29 29 H 1.48504 * 109.47632 * 330.00059 * 26 24 22 30 30 H 1.09003 * 109.46776 * 299.99918 * 1 2 3 31 31 H 1.09003 * 109.47050 * 59.99442 * 1 2 3 32 32 H 1.08994 * 109.47138 * 180.02562 * 1 2 3 33 33 H 1.07997 * 119.75994 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.76890 * 179.97438 * 5 4 3 35 35 H 1.08004 * 120.02205 * 179.97438 * 6 5 4 36 36 H 1.08007 * 119.99959 * 229.31855 * 8 7 6 37 37 H 1.09005 * 109.47120 * 90.00463 * 13 12 10 38 38 H 1.09008 * 109.47023 * 209.99883 * 13 12 10 39 39 H 1.08998 * 109.47387 * 329.99796 * 13 12 10 40 40 H 1.09004 * 109.47305 * 269.97763 * 17 16 14 41 41 H 1.09000 * 109.47427 * 29.97825 * 17 16 14 42 42 H 1.09006 * 109.47223 * 149.98470 * 17 16 14 43 43 H 0.97000 * 120.00293 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2918 2.3727 0.0005 5 6 1.9108 3.6135 0.0000 6 6 3.2836 3.7083 -0.0005 7 6 4.0666 2.5438 -0.0011 8 6 5.5250 2.6377 -0.0022 9 6 6.1656 3.4610 0.9055 10 6 7.6116 3.7399 0.8063 11 8 8.2831 3.2497 -0.0816 12 7 8.1683 4.5525 1.7281 13 6 9.6028 4.8401 1.6553 14 6 7.4405 5.0980 2.7126 15 8 8.0037 5.8209 3.5109 16 7 6.1252 4.8894 2.8642 17 6 5.4220 5.5348 3.9756 18 6 5.4340 4.0991 2.0173 19 8 4.2402 3.9179 2.1653 20 6 3.4370 1.2840 -0.0059 21 8 4.1790 0.1510 -0.0112 22 6 4.5151 -0.3655 1.1865 23 1 4.1940 0.1231 2.0945 24 6 5.2742 -1.5257 1.2537 25 7 5.6653 -2.1201 0.1486 26 14 5.7396 -2.2423 2.9147 27 1 4.6915 -3.1988 3.3525 28 1 7.0400 -2.9506 2.8014 29 1 5.8577 -1.1472 3.9109 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2135 2.3114 0.0005 34 1 1.3113 4.5119 0.0000 35 1 3.7583 4.6785 -0.0014 36 1 6.1025 2.0639 -0.7120 37 1 9.7654 5.7237 1.0380 38 1 9.9884 5.0219 2.6585 39 1 10.1222 3.9888 1.2152 40 1 5.4450 4.8820 4.8482 41 1 5.9107 6.4791 4.2154 42 1 4.3870 5.7234 3.6902 43 1 6.1954 -2.9311 0.1955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005879196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:49 Heat of formation + Delta-G solvation = -97.655732 kcal Electronic energy + Delta-G solvation = -33342.048709 eV Core-core repulsion = 28741.356267 eV Total energy + Delta-G solvation = -4600.692442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.125 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.54189 -41.38400 -40.70790 -40.29878 -39.00599 -37.84205 -36.56811 -36.46032 -34.89197 -34.10638 -31.30341 -30.69059 -29.26752 -28.10813 -27.88972 -27.08485 -26.38807 -24.17806 -24.04856 -23.20014 -21.90215 -20.78999 -20.02930 -18.99791 -18.60379 -18.53789 -18.28023 -17.79706 -17.37105 -16.92217 -16.58113 -16.55717 -16.47497 -16.28035 -16.11614 -15.74804 -15.54124 -15.35404 -15.15193 -14.98008 -14.57070 -14.16149 -13.88872 -13.69604 -13.45912 -13.39505 -13.31031 -13.27807 -13.08016 -12.82369 -12.39169 -12.32270 -12.29057 -12.21829 -11.98515 -11.78041 -11.63141 -11.24283 -11.15314 -10.99115 -10.81110 -10.37661 -9.42054 -8.90607 -8.26054 -5.99278 -1.11895 0.29337 0.53923 0.78974 0.90291 0.93231 1.31694 1.36896 1.45530 1.64543 2.22841 2.26847 2.46975 2.60343 2.75118 3.06895 3.33923 3.63238 3.70628 3.92701 3.98861 4.15031 4.23108 4.28830 4.31156 4.33049 4.36514 4.42398 4.42755 4.45171 4.46482 4.63374 4.71235 4.73394 4.76130 4.79576 4.93470 5.14086 5.18067 5.32029 5.33234 5.47444 5.80251 5.98945 6.03854 6.10546 6.23765 6.57950 6.67074 7.15718 8.01358 8.95832 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.004536 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.656201 B = 6171.034762 C = 7820.433793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.067 3.933 4 C -0.164 4.164 5 C -0.103 4.103 6 C -0.059 4.059 7 C -0.123 4.123 8 C 0.167 3.833 9 C -0.304 4.304 10 C 0.576 3.424 11 O -0.506 6.506 12 N -0.564 5.564 13 C 0.076 3.924 14 C 0.714 3.286 15 O -0.541 6.541 16 N -0.562 5.562 17 C 0.078 3.922 18 C 0.569 3.431 19 O -0.476 6.476 20 C 0.097 3.903 21 O -0.260 6.260 22 C -0.363 4.363 23 H 0.059 0.941 24 C -0.023 4.023 25 N -0.924 5.924 26 Si 0.990 3.010 27 H -0.266 1.266 28 H -0.271 1.271 29 H -0.265 1.265 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 17.417 3.928 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.021 3.979 4 C -0.183 4.183 5 C -0.121 4.121 6 C -0.077 4.077 7 C -0.124 4.124 8 C 0.147 3.853 9 C -0.311 4.311 10 C 0.368 3.632 11 O -0.380 6.380 12 N -0.308 5.308 13 C -0.064 4.064 14 C 0.417 3.583 15 O -0.415 6.415 16 N -0.307 5.307 17 C -0.062 4.062 18 C 0.360 3.640 19 O -0.349 6.349 20 C 0.052 3.948 21 O -0.173 6.173 22 C -0.440 4.440 23 H 0.077 0.923 24 C -0.218 4.218 25 N -0.566 5.566 26 Si 0.812 3.188 27 H -0.191 1.191 28 H -0.196 1.196 29 H -0.189 1.189 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.180 0.820 34 H 0.186 0.814 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.201 17.022 3.767 17.933 hybrid contribution 0.228 -0.912 0.560 1.094 sum -3.974 16.110 4.327 17.147 Atomic orbital electron populations 1.23338 0.76930 1.05046 1.02361 1.86267 1.23095 1.26855 1.88818 1.19715 0.91586 0.86015 1.00576 1.21613 1.01134 0.90955 1.04587 1.21069 0.93759 0.97724 0.99543 1.21049 0.94093 0.95453 0.97107 1.19183 0.92001 0.93323 1.07891 1.23140 0.93595 0.80737 0.87832 1.21846 0.93298 1.12857 1.03064 1.18291 0.87064 0.77049 0.80787 1.90853 1.64253 1.49293 1.33628 1.45943 1.13452 1.45154 1.26224 1.22180 0.74475 1.03965 1.05765 1.15437 0.81445 0.80167 0.81242 1.90951 1.68822 1.39044 1.42692 1.46008 1.07956 1.46082 1.30679 1.22151 0.98391 0.99290 0.86326 1.18255 0.86797 0.77442 0.81468 1.90921 1.13580 1.58050 1.72303 1.19104 0.88474 0.87230 1.00019 1.83726 1.68046 1.36177 1.29389 1.21039 1.32398 1.08736 0.81798 0.92306 1.26033 0.97426 0.96234 1.02124 1.70094 1.38121 1.19827 1.28599 0.84987 0.78299 0.78714 0.76772 1.19123 1.19623 1.18931 0.91459 0.90925 0.87535 0.82023 0.81381 0.84423 0.83703 0.88836 0.87791 0.88882 0.90403 0.87527 0.87810 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.34 -14.24 10.28 -79.12 -0.81 -15.05 16 3 C 0.07 2.74 6.70 22.58 0.15 2.89 16 4 C -0.16 -4.85 9.03 22.43 0.20 -4.65 16 5 C -0.10 -2.69 10.01 22.22 0.22 -2.47 16 6 C -0.06 -1.80 6.71 22.63 0.15 -1.64 16 7 C -0.12 -4.87 4.62 -20.08 -0.09 -4.96 16 8 C 0.17 6.52 8.98 24.33 0.22 6.74 16 9 C -0.30 -10.51 5.94 -18.32 -0.11 -10.62 16 10 C 0.58 18.92 7.64 86.69 0.66 19.58 16 11 O -0.51 -18.82 16.16 -4.15 -0.07 -18.89 16 12 N -0.56 -15.47 2.94 -801.09 -2.36 -17.83 16 13 C 0.08 1.56 10.05 127.77 1.28 2.84 16 14 C 0.71 19.45 8.07 179.52 1.45 20.90 16 15 O -0.54 -15.11 14.93 -3.83 -0.06 -15.17 16 16 N -0.56 -14.94 2.94 -801.09 -2.36 -17.30 16 17 C 0.08 1.52 10.05 127.77 1.28 2.80 16 18 C 0.57 17.92 7.14 86.69 0.62 18.54 16 19 O -0.48 -16.15 12.06 -4.17 -0.05 -16.20 16 20 C 0.10 4.64 5.63 23.16 0.13 4.77 16 21 O -0.26 -15.34 8.92 -4.04 -0.04 -15.37 16 22 C -0.36 -21.71 9.81 67.96 0.67 -21.04 16 23 H 0.06 3.48 7.76 -2.91 -0.02 3.46 16 24 C -0.02 -1.35 5.50 84.89 0.47 -0.88 16 25 N -0.92 -58.36 13.67 21.64 0.30 -58.07 16 26 Si 0.99 45.98 29.55 68.60 2.03 48.01 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 30 H 0.07 1.49 7.65 -2.39 -0.02 1.47 16 31 H 0.07 1.53 7.66 -2.39 -0.02 1.51 16 32 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.16 3.45 6.26 -2.91 -0.02 3.43 16 34 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.14 3.52 7.46 -2.91 -0.02 3.50 16 36 H 0.15 6.06 7.79 -2.91 -0.02 6.03 16 37 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.10 1.91 7.27 -2.38 -0.02 1.90 16 39 H 0.09 1.94 7.40 -2.39 -0.02 1.93 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.11 1.76 7.27 -2.39 -0.02 1.75 16 42 H 0.10 1.81 7.40 -2.38 -0.02 1.79 16 43 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -81.29 373.20 6.08 -75.22 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.08 Total: 16.26 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 8.42 Total: 34.38 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -4.42 Total: -93.19 kcal Atomic # 8 Polarization: -79.65 SS G_CDS: -1.02 Total: -80.68 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -81.29 6.08 -75.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005879196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.439 kcal (2) G-P(sol) polarization free energy of solvation -81.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds