Wall clock time and date at job start Tue Mar 31 2020 05:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35850 * 117.00269 * 2 1 4 4 C 1.38894 * 119.90792 * 179.97438 * 3 2 1 5 5 C 1.37817 * 120.09179 * 180.02562 * 4 3 2 6 6 C 1.39664 * 119.90830 * 359.97438 * 5 4 3 7 7 C 1.47734 * 120.09411 * 179.97438 * 6 5 4 8 8 N 1.31523 * 126.44608 * 148.31841 * 7 6 5 9 9 N 1.28513 * 109.95053 * 179.82207 * 8 7 6 10 10 C 1.31538 * 110.04206 * 0.45028 * 9 8 7 11 11 S 1.76202 * 126.38919 * 179.74767 * 10 9 8 12 12 C 1.76198 * 100.00314 * 359.97438 * 11 10 9 13 13 H 1.08005 * 119.99553 * 359.97438 * 12 11 10 14 14 C 1.38607 * 120.00412 * 180.02562 * 12 11 10 15 15 N 1.31675 * 119.99763 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00313 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46828 * 60.00011 * 16 14 12 18 18 H 1.48501 * 109.47289 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46884 * 300.00135 * 16 14 12 20 20 N 1.36800 * 107.22135 * 359.72736 * 10 9 8 21 21 C 1.46497 * 127.16483 * 180.02562 * 20 10 9 22 22 C 1.52997 * 109.47260 * 54.29905 * 21 20 10 23 23 C 1.52994 * 109.47315 * 180.02562 * 22 21 20 24 24 C 1.53005 * 109.47288 * 60.00029 * 23 22 21 25 25 C 1.52997 * 109.46918 * 300.00214 * 24 23 22 26 26 C 1.52994 * 109.47315 * 59.99803 * 25 24 23 27 27 C 1.39669 * 119.81610 * 0.25443 * 6 5 4 28 28 C 1.37824 * 119.90410 * 359.51198 * 27 6 5 29 29 H 1.08999 * 109.47433 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47326 * 300.00331 * 1 2 3 31 31 H 1.09006 * 109.47045 * 59.99755 * 1 2 3 32 32 H 1.08001 * 119.95304 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.04803 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00186 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.47404 * 174.30339 * 21 20 10 36 36 H 1.09003 * 109.47237 * 300.00472 * 22 21 20 37 37 H 1.08997 * 109.47117 * 59.99936 * 22 21 20 38 38 H 1.09003 * 109.47095 * 300.00242 * 23 22 21 39 39 H 1.09000 * 109.47327 * 179.97438 * 23 22 21 40 40 H 1.08997 * 109.47067 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.46879 * 60.00081 * 24 23 22 42 42 H 1.09003 * 109.47237 * 299.99648 * 25 24 23 43 43 H 1.09002 * 109.46883 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.47540 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.47209 * 60.00300 * 26 25 24 46 46 H 1.07995 * 120.04980 * 179.74909 * 27 6 5 47 47 H 1.07995 * 119.95108 * 180.21561 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 3.4330 1.2808 0.0005 5 6 4.0626 2.5067 0.0011 6 6 3.3039 3.6793 0.0005 7 6 3.9746 4.9956 0.0017 8 7 3.5278 6.1007 -0.5542 9 7 4.3619 7.0585 -0.3581 10 6 5.3968 6.6219 0.3264 11 16 6.7951 7.5705 0.8262 12 6 6.3572 9.1390 0.1533 13 1 5.4285 9.2550 -0.3857 14 6 7.2050 10.2235 0.3146 15 7 8.3380 10.0816 0.9704 16 14 6.7411 11.8862 -0.3994 17 1 5.4594 12.3408 0.1972 18 1 7.8076 12.8724 -0.0908 19 1 6.5872 11.7671 -1.8716 20 7 5.1849 5.2941 0.5784 21 6 6.0652 4.3808 1.3112 22 6 6.3738 4.9669 2.6904 23 6 7.2937 4.0134 3.4555 24 6 8.5976 3.8280 2.6767 25 6 8.2890 3.2419 1.2976 26 6 7.3691 4.1954 0.5324 27 6 1.9093 3.6040 0.0048 28 6 1.2875 2.3740 -0.0006 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0189 0.3736 0.0014 33 1 5.1413 2.5606 0.0011 34 1 8.9312 10.8407 1.0837 35 1 5.5715 3.4162 1.4286 36 1 6.8676 5.9316 2.5730 37 1 5.4449 5.0994 3.2450 38 1 6.8003 3.0486 3.5728 39 1 7.5140 4.4312 4.4379 40 1 9.2531 3.1491 3.2221 41 1 9.0910 4.7929 2.5594 42 1 7.7955 2.2771 1.4149 43 1 9.2178 3.1103 0.7426 44 1 7.1495 3.7781 -0.4503 45 1 7.8625 5.1603 0.4150 46 1 1.3189 4.5083 0.0085 47 1 0.2092 2.3150 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006140738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:48 Heat of formation + Delta-G solvation = 41.234149 kcal Electronic energy + Delta-G solvation = -29839.650146 eV Core-core repulsion = 25921.285049 eV Total energy + Delta-G solvation = -3918.365097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.06483 -40.18159 -38.48481 -37.55234 -33.90063 -32.63808 -31.71314 -31.19091 -30.77186 -29.20347 -28.75213 -27.34165 -25.64836 -23.74109 -23.26123 -22.63321 -22.27127 -21.39822 -20.43906 -19.55323 -18.33917 -17.89322 -17.13022 -16.29812 -15.98075 -15.82024 -15.31169 -15.13304 -14.94988 -14.86142 -14.49421 -14.15117 -14.10647 -13.85644 -13.47947 -13.09298 -13.07434 -12.89829 -12.61552 -12.44223 -12.23763 -12.12973 -11.52188 -11.46406 -11.24281 -11.19145 -11.08180 -11.05602 -10.96847 -10.82682 -10.49216 -10.44623 -10.26848 -10.17784 -9.83430 -9.69068 -9.40128 -9.17666 -9.03366 -8.76323 -8.05824 -6.70260 -6.45515 -4.19308 0.98408 1.21617 2.43825 2.50464 3.02378 3.22673 3.23300 3.25114 3.32915 3.46714 3.84135 4.01045 4.49286 4.54949 4.61774 4.67821 4.70339 4.85561 4.86681 4.92462 4.98072 5.02474 5.05156 5.12135 5.18042 5.20842 5.24958 5.27104 5.42274 5.45996 5.50438 5.57516 5.75030 5.81763 5.96517 5.98773 6.01666 6.04659 6.09922 6.16118 6.23058 6.25151 6.32614 6.33864 6.51200 6.55040 6.68414 6.76318 7.15566 7.41558 7.58738 8.38701 9.06962 9.46186 10.62293 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003136 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.957183 B = 8925.873482 C =10849.049441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.146 4.146 5 C -0.078 4.078 6 C -0.025 4.025 7 C 0.174 3.826 8 N -0.275 5.275 9 N -0.305 5.305 10 C 0.175 3.825 11 S 0.143 5.857 12 C -0.538 4.538 13 H 0.103 0.897 14 C 0.077 3.923 15 N -0.880 5.880 16 Si 0.930 3.070 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.270 1.270 20 N -0.468 5.468 21 C 0.139 3.861 22 C -0.142 4.142 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.111 4.111 26 C -0.140 4.140 27 C -0.043 4.043 28 C -0.204 4.204 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.274 0.726 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 -20.536 3.393 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.080 3.920 4 C -0.165 4.165 5 C -0.098 4.098 6 C -0.028 4.028 7 C -0.093 4.093 8 N -0.117 5.117 9 N -0.151 5.151 10 C -0.195 4.195 11 S 0.376 5.624 12 C -0.686 4.686 13 H 0.121 0.879 14 C -0.132 4.132 15 N -0.515 5.515 16 Si 0.756 3.244 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.195 1.195 20 N -0.164 5.164 21 C 0.035 3.965 22 C -0.180 4.180 23 C -0.148 4.148 24 C -0.163 4.163 25 C -0.149 4.149 26 C -0.179 4.179 27 C -0.063 4.063 28 C -0.222 4.222 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.154 0.846 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.704 -19.884 3.311 20.950 hybrid contribution -0.815 0.684 -0.465 1.161 sum -6.519 -19.201 2.847 20.476 Atomic orbital electron populations 1.23067 0.78375 1.03867 1.01557 1.86043 1.21420 1.27004 1.88675 1.19120 0.92301 0.84095 0.96451 1.20233 0.91284 0.98178 1.06784 1.21148 0.99913 0.90738 0.97974 1.17393 0.92605 0.87849 1.04956 1.22490 0.87282 0.96132 1.03354 1.74269 1.23319 0.95820 1.18261 1.74748 1.00700 1.21020 1.18616 1.28326 1.04721 0.85055 1.01398 1.83275 1.10604 1.03795 1.64715 1.23263 1.10909 0.93136 1.41296 0.87857 1.25030 0.94114 0.99634 0.94442 1.69947 1.10047 1.32569 1.38932 0.86010 0.78339 0.80282 0.79797 1.19480 1.20825 1.19469 1.46538 1.17102 1.08869 1.43875 1.21610 0.90408 0.92470 0.92000 1.22054 1.00913 1.01552 0.93508 1.21448 0.95573 0.98949 0.98838 1.21610 0.97310 1.01905 0.95451 1.21458 0.99317 0.97957 0.96141 1.22026 0.94811 1.02590 0.98460 1.21006 0.92950 0.97603 0.94788 1.21154 1.00135 0.91855 1.09088 0.88305 0.92543 0.92508 0.84828 0.84940 0.91649 0.88054 0.88575 0.91435 0.92141 0.91171 0.91825 0.90913 0.92062 0.91194 0.91524 0.89047 0.84629 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.22 10.49 -19.27 -0.20 -3.42 16 3 C 0.13 1.43 6.69 -39.10 -0.26 1.16 16 4 C -0.15 -1.64 9.97 -39.49 -0.39 -2.03 16 5 C -0.08 -0.99 8.33 -39.20 -0.33 -1.31 16 6 C -0.02 -0.38 5.79 -104.95 -0.61 -0.99 16 7 C 0.17 3.37 7.56 -153.81 -1.16 2.21 16 8 N -0.28 -6.31 12.18 32.56 0.40 -5.91 16 9 N -0.31 -7.78 11.02 30.77 0.34 -7.44 16 10 C 0.18 4.08 7.57 -87.88 -0.67 3.41 16 11 S 0.14 3.49 17.76 -107.50 -1.91 1.58 16 12 C -0.54 -15.04 9.37 30.87 0.29 -14.76 16 13 H 0.10 3.01 6.92 -52.48 -0.36 2.65 16 14 C 0.08 2.08 5.49 -17.48 -0.10 1.99 16 15 N -0.88 -24.30 13.22 55.48 0.73 -23.57 16 16 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 N -0.47 -8.93 2.68 -106.96 -0.29 -9.21 16 21 C 0.14 2.03 1.99 -67.93 -0.14 1.90 16 22 C -0.14 -2.04 5.17 -26.74 -0.14 -2.18 16 23 C -0.11 -1.20 5.92 -26.73 -0.16 -1.36 16 24 C -0.13 -1.32 5.92 -26.73 -0.16 -1.48 16 25 C -0.11 -1.15 5.92 -26.74 -0.16 -1.31 16 26 C -0.14 -1.92 5.21 -26.73 -0.14 -2.06 16 27 C -0.04 -0.59 9.74 -39.20 -0.38 -0.97 16 28 C -0.20 -2.27 9.02 -39.49 -0.36 -2.63 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 31 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.54 5.84 -52.49 -0.31 1.24 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 35 H 0.10 1.29 5.13 -51.93 -0.27 1.02 16 36 H 0.10 1.65 5.50 -51.87 -0.29 1.36 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 45 H 0.09 1.50 6.61 -51.93 -0.34 1.16 16 46 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 47 H 0.13 1.12 6.28 -52.49 -0.33 0.80 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -32.49 386.96 -10.45 -42.94 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.47 Total: 2.08 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.86 Total: -19.26 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 1.18 Total: -46.14 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -0.20 Total: -3.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.91 Total: 1.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.49 -10.45 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006140738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.178 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds