Wall clock time and date at job start Tue Mar 31 2020 05:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35850 * 117.00269 * 2 1 4 4 C 1.38894 * 119.90792 * 179.97438 * 3 2 1 5 5 C 1.37817 * 120.09179 * 180.02562 * 4 3 2 6 6 C 1.39664 * 119.90830 * 359.97438 * 5 4 3 7 7 C 1.47734 * 120.09411 * 179.97438 * 6 5 4 8 8 N 1.31523 * 126.44608 * 148.31841 * 7 6 5 9 9 N 1.28513 * 109.95053 * 179.82207 * 8 7 6 10 10 C 1.31538 * 110.04206 * 0.45028 * 9 8 7 11 11 S 1.76202 * 126.38919 * 179.74767 * 10 9 8 12 12 C 1.76198 * 100.00314 * 359.97438 * 11 10 9 13 13 H 1.08005 * 119.99553 * 359.97438 * 12 11 10 14 14 C 1.38607 * 120.00412 * 180.02562 * 12 11 10 15 15 N 1.31675 * 119.99763 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00313 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46828 * 60.00011 * 16 14 12 18 18 H 1.48501 * 109.47289 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46884 * 300.00135 * 16 14 12 20 20 N 1.36800 * 107.22135 * 359.72736 * 10 9 8 21 21 C 1.46497 * 127.16483 * 180.02562 * 20 10 9 22 22 C 1.52997 * 109.47260 * 54.29905 * 21 20 10 23 23 C 1.52994 * 109.47315 * 180.02562 * 22 21 20 24 24 C 1.53005 * 109.47288 * 60.00029 * 23 22 21 25 25 C 1.52997 * 109.46918 * 300.00214 * 24 23 22 26 26 C 1.52994 * 109.47315 * 59.99803 * 25 24 23 27 27 C 1.39669 * 119.81610 * 0.25443 * 6 5 4 28 28 C 1.37824 * 119.90410 * 359.51198 * 27 6 5 29 29 H 1.08999 * 109.47433 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47326 * 300.00331 * 1 2 3 31 31 H 1.09006 * 109.47045 * 59.99755 * 1 2 3 32 32 H 1.08001 * 119.95304 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.04803 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00186 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.47404 * 174.30339 * 21 20 10 36 36 H 1.09003 * 109.47237 * 300.00472 * 22 21 20 37 37 H 1.08997 * 109.47117 * 59.99936 * 22 21 20 38 38 H 1.09003 * 109.47095 * 300.00242 * 23 22 21 39 39 H 1.09000 * 109.47327 * 179.97438 * 23 22 21 40 40 H 1.08997 * 109.47067 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.46879 * 60.00081 * 24 23 22 42 42 H 1.09003 * 109.47237 * 299.99648 * 25 24 23 43 43 H 1.09002 * 109.46883 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.47540 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.47209 * 60.00300 * 26 25 24 46 46 H 1.07995 * 120.04980 * 179.74909 * 27 6 5 47 47 H 1.07995 * 119.95108 * 180.21561 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 3.4330 1.2808 0.0005 5 6 4.0626 2.5067 0.0011 6 6 3.3039 3.6793 0.0005 7 6 3.9746 4.9956 0.0017 8 7 3.5278 6.1007 -0.5542 9 7 4.3619 7.0585 -0.3581 10 6 5.3968 6.6219 0.3264 11 16 6.7951 7.5705 0.8262 12 6 6.3572 9.1390 0.1533 13 1 5.4285 9.2550 -0.3857 14 6 7.2050 10.2235 0.3146 15 7 8.3380 10.0816 0.9704 16 14 6.7411 11.8862 -0.3994 17 1 5.4594 12.3408 0.1972 18 1 7.8076 12.8724 -0.0908 19 1 6.5872 11.7671 -1.8716 20 7 5.1849 5.2941 0.5784 21 6 6.0652 4.3808 1.3112 22 6 6.3738 4.9669 2.6904 23 6 7.2937 4.0134 3.4555 24 6 8.5976 3.8280 2.6767 25 6 8.2890 3.2419 1.2976 26 6 7.3691 4.1954 0.5324 27 6 1.9093 3.6040 0.0048 28 6 1.2875 2.3740 -0.0006 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0189 0.3736 0.0014 33 1 5.1413 2.5606 0.0011 34 1 8.9312 10.8407 1.0837 35 1 5.5715 3.4162 1.4286 36 1 6.8676 5.9316 2.5730 37 1 5.4449 5.0994 3.2450 38 1 6.8003 3.0486 3.5728 39 1 7.5140 4.4312 4.4379 40 1 9.2531 3.1491 3.2221 41 1 9.0910 4.7929 2.5594 42 1 7.7955 2.2771 1.4149 43 1 9.2178 3.1103 0.7426 44 1 7.1495 3.7781 -0.4503 45 1 7.8625 5.1603 0.4150 46 1 1.3189 4.5083 0.0085 47 1 0.2092 2.3150 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006140738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:47 Heat of formation + Delta-G solvation = 24.055890 kcal Electronic energy + Delta-G solvation = -29840.395051 eV Core-core repulsion = 25921.285049 eV Total energy + Delta-G solvation = -3919.110002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.68124 -41.05774 -39.60594 -38.46195 -35.25794 -34.71677 -32.92781 -32.19456 -31.77284 -30.43941 -29.99092 -28.14873 -27.68692 -25.06106 -24.42160 -23.63364 -23.26804 -22.77230 -21.77477 -20.67483 -19.71220 -19.17105 -18.54544 -17.32068 -17.01246 -16.99415 -16.93110 -16.62704 -16.55501 -16.03093 -15.51396 -15.18722 -15.03756 -14.92184 -14.71229 -14.39333 -14.17907 -13.83726 -13.70792 -13.50488 -13.35175 -13.22497 -13.04014 -13.02228 -12.87052 -12.47395 -12.33206 -12.21713 -12.10652 -12.00852 -11.89522 -11.65689 -11.61357 -11.42385 -11.40218 -11.35550 -10.81357 -10.72393 -10.65499 -10.11608 -9.25380 -8.55692 -8.51590 -6.28607 -0.12953 0.26955 0.73214 0.97556 1.34365 1.39214 1.47382 1.75838 1.88408 2.11879 2.31195 2.69807 2.88032 2.96910 3.25722 3.43912 3.63355 3.73043 3.80177 3.90882 4.06190 4.06791 4.17920 4.21202 4.27672 4.40120 4.43917 4.45248 4.48412 4.49368 4.54869 4.57334 4.69427 4.78678 4.88725 4.96784 4.99104 5.01920 5.11940 5.18351 5.22354 5.24151 5.26147 5.31750 5.36588 5.45221 5.47608 5.56240 5.58149 5.95948 6.21302 6.36181 6.96164 7.75665 8.56707 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003136 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.957183 B = 8925.873482 C =10849.049441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.138 3.862 4 C -0.143 4.143 5 C -0.068 4.068 6 C -0.065 4.065 7 C 0.204 3.796 8 N -0.321 5.321 9 N -0.350 5.350 10 C 0.160 3.840 11 S 0.140 5.860 12 C -0.571 4.571 13 H 0.080 0.920 14 C 0.036 3.964 15 N -0.902 5.902 16 Si 0.989 3.011 17 H -0.270 1.270 18 H -0.263 1.263 19 H -0.270 1.270 20 N -0.459 5.459 21 C 0.132 3.868 22 C -0.142 4.142 23 C -0.103 4.103 24 C -0.125 4.125 25 C -0.103 4.103 26 C -0.138 4.138 27 C -0.048 4.048 28 C -0.199 4.199 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.280 0.720 35 H 0.132 0.868 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.124 0.876 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -24.611 4.050 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.091 3.909 4 C -0.161 4.161 5 C -0.088 4.088 6 C -0.068 4.068 7 C -0.065 4.065 8 N -0.162 5.162 9 N -0.194 5.194 10 C -0.213 4.213 11 S 0.372 5.628 12 C -0.719 4.719 13 H 0.098 0.902 14 C -0.171 4.171 15 N -0.538 5.538 16 Si 0.811 3.189 17 H -0.195 1.195 18 H -0.187 1.187 19 H -0.195 1.195 20 N -0.154 5.154 21 C 0.031 3.969 22 C -0.181 4.181 23 C -0.140 4.140 24 C -0.163 4.163 25 C -0.141 4.141 26 C -0.177 4.177 27 C -0.069 4.069 28 C -0.217 4.217 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.090 0.910 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.142 0.858 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.275 -24.001 3.977 25.125 hybrid contribution -0.858 1.610 -0.667 1.943 sum -7.133 -22.391 3.310 23.732 Atomic orbital electron populations 1.23416 0.76262 1.05868 1.02454 1.86059 1.23582 1.26067 1.88007 1.19303 0.92621 0.84585 0.94387 1.20506 0.91660 0.98367 1.05558 1.21207 1.00295 0.90236 0.97069 1.17500 0.93451 0.86573 1.09253 1.23294 0.86488 0.96821 0.99854 1.74167 1.24097 0.96855 1.21042 1.74616 1.01881 1.23063 1.19881 1.28018 1.04177 0.86764 1.02359 1.82973 1.11808 1.02403 1.65595 1.23418 1.10598 0.95703 1.42159 0.90163 1.25824 0.93937 1.02733 0.94564 1.69998 1.10632 1.33745 1.39437 0.85141 0.78449 0.76481 0.78841 1.19496 1.18721 1.19503 1.46859 1.17466 1.07904 1.43180 1.22072 0.90520 0.92578 0.91774 1.22061 1.01045 1.01137 0.93821 1.21456 0.95051 0.99134 0.98408 1.21625 0.97326 1.01381 0.95941 1.21475 0.99138 0.98040 0.95430 1.22037 0.94622 1.01918 0.99141 1.21010 0.92336 0.98476 0.95049 1.21350 1.01576 0.90726 1.08050 0.85957 0.91517 0.91694 0.82035 0.83909 0.91035 0.85089 0.91857 0.92338 0.89353 0.90590 0.88981 0.93455 0.89000 0.90149 0.91376 0.92478 0.85751 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -5.16 10.49 -91.86 -0.96 -6.13 16 3 C 0.14 2.58 6.69 22.58 0.15 2.74 16 4 C -0.14 -2.62 9.97 22.33 0.22 -2.40 16 5 C -0.07 -1.55 8.33 22.51 0.19 -1.36 16 6 C -0.06 -1.94 5.79 -20.08 -0.12 -2.05 16 7 C 0.20 8.12 7.56 136.18 1.03 9.15 16 8 N -0.32 -15.60 12.18 -50.89 -0.62 -16.22 16 9 N -0.35 -19.08 11.02 -56.55 -0.62 -19.70 16 10 C 0.16 7.93 7.57 179.39 1.36 9.29 16 11 S 0.14 7.33 17.76 -56.49 -1.00 6.32 16 12 C -0.57 -33.90 9.37 67.91 0.64 -33.26 16 13 H 0.08 5.03 6.92 -2.91 -0.02 5.01 16 14 C 0.04 2.02 5.49 84.80 0.47 2.49 16 15 N -0.90 -51.39 13.22 21.61 0.29 -51.10 16 16 Si 0.99 45.17 29.55 68.60 2.03 47.20 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 N -0.46 -18.15 2.68 -492.31 -1.32 -19.47 16 21 C 0.13 3.81 1.99 44.99 0.09 3.90 16 22 C -0.14 -4.12 5.17 30.59 0.16 -3.96 16 23 C -0.10 -2.03 5.92 30.59 0.18 -1.85 16 24 C -0.13 -2.38 5.92 30.59 0.18 -2.20 16 25 C -0.10 -1.86 5.92 30.59 0.18 -1.68 16 26 C -0.14 -3.74 5.21 30.59 0.16 -3.58 16 27 C -0.05 -1.28 9.74 22.52 0.22 -1.06 16 28 C -0.20 -3.88 9.02 22.33 0.20 -3.68 16 29 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.46 7.65 -2.39 -0.02 0.44 16 31 H 0.06 0.48 7.65 -2.38 -0.02 0.46 16 32 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.14 2.88 5.84 -2.91 -0.02 2.86 16 34 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.13 3.00 5.13 -2.39 -0.01 2.99 16 36 H 0.06 2.29 5.50 -2.42 -0.01 2.28 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.78 8.11 -2.39 -0.02 1.76 16 45 H 0.06 1.96 6.61 -2.39 -0.02 1.95 16 46 H 0.12 3.51 8.06 -2.91 -0.02 3.48 16 47 H 0.16 2.16 6.28 -2.91 -0.02 2.14 16 Total: -1.00 -76.81 386.96 5.20 -71.61 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.99 Total: 15.77 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 6.42 Total: -28.29 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -2.28 Total: -106.49 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.96 Total: -6.13 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 7.33 SS G_CDS: -1.00 Total: 6.32 kcal Total: -76.81 5.20 -71.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006140738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.668 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds