Wall clock time and date at job start Tue Mar 31 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30612 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48497 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46774 * 299.99694 * 3 2 1 6 6 H 1.48500 * 109.47114 * 59.99707 * 3 2 1 7 7 C 1.40182 * 119.99555 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99359 * 180.02562 * 7 2 1 9 9 C 1.41741 * 119.99965 * 359.97438 * 7 2 1 10 10 O 1.21785 * 120.00175 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99890 * 179.97438 * 9 7 2 12 12 N 1.40094 * 120.00420 * 180.02562 * 11 9 7 13 13 C 1.28051 * 120.00635 * 180.02562 * 12 11 9 14 14 C 1.50698 * 120.00350 * 180.02562 * 13 12 11 15 15 H 1.09001 * 107.99890 * 359.97438 * 14 13 12 16 16 C 1.51703 * 108.12731 * 243.21229 * 14 13 12 17 17 O 1.21248 * 121.23616 * 58.26171 * 16 14 13 18 18 N 1.34994 * 117.52675 * 238.24626 * 16 14 13 19 19 C 1.33789 * 121.96773 * 0.02562 * 18 16 14 20 20 S 1.71203 * 117.61043 * 179.97438 * 19 18 16 21 21 N 1.33789 * 124.78065 * 0.02562 * 19 18 16 22 22 C 1.40159 * 119.01811 * 179.97438 * 21 19 18 23 23 C 1.38835 * 120.06151 * 269.87336 * 22 21 19 24 24 C 1.38124 * 119.93265 * 179.72186 * 23 22 21 25 25 C 1.38282 * 120.06051 * 0.57631 * 24 23 22 26 26 C 1.38273 * 120.13966 * 359.69963 * 25 24 23 27 27 C 1.38122 * 120.06414 * 0.02562 * 26 25 24 28 28 C 1.34632 * 121.88490 * 0.06478 * 21 19 18 29 29 O 1.21253 * 120.99910 * 179.97438 * 28 21 19 30 30 H 0.97006 * 119.99614 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99549 * 0.02562 * 11 9 7 32 32 H 1.08002 * 119.99630 * 359.97438 * 13 12 11 33 33 H 0.97004 * 119.01244 * 180.02562 * 18 16 14 34 34 H 1.08003 * 120.04036 * 359.97438 * 23 22 21 35 35 H 1.07994 * 119.97320 * 180.29417 * 24 23 22 36 36 H 1.08006 * 119.92905 * 179.71558 * 25 24 23 37 37 H 1.08000 * 119.97455 * 180.02562 * 26 25 24 38 38 H 1.07998 * 120.03806 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3463 -0.0006 5 1 1.8815 2.3963 -1.2126 6 1 1.8814 2.3964 1.2125 7 6 2.0069 -1.2141 0.0005 8 1 3.0869 -1.2140 0.0010 9 6 1.2981 -2.4415 0.0016 10 8 0.0803 -2.4415 0.0016 11 7 1.9719 -3.6087 0.0016 12 7 1.2715 -4.8220 0.0022 13 6 1.9116 -5.9310 0.0027 14 6 1.1581 -7.2361 0.0027 15 1 0.0919 -7.0094 0.0027 16 6 1.4843 -7.9694 1.2900 17 8 1.2630 -7.4691 2.3720 18 7 2.0297 -9.1999 1.1860 19 6 2.2801 -9.7658 -0.0002 20 16 2.9746 -11.3306 -0.0019 21 7 2.0285 -9.1978 -1.1851 22 6 2.3406 -9.9014 -2.3563 23 6 3.5930 -9.7616 -2.9389 24 6 3.8997 -10.4608 -4.0899 25 6 2.9566 -11.2901 -4.6686 26 6 1.7064 -11.4270 -4.0940 27 6 1.3958 -10.7348 -2.9398 28 6 1.4860 -7.9696 -1.2840 29 8 1.2651 -7.4698 -2.3665 30 1 -0.4850 0.8401 -0.0004 31 1 2.9420 -3.6087 0.0013 32 1 2.9916 -5.9311 0.0023 33 1 2.2465 -9.6883 1.9956 34 1 4.3283 -9.1100 -2.4902 35 1 4.8754 -10.3561 -4.5409 36 1 3.1972 -11.8323 -5.5713 37 1 0.9720 -12.0758 -4.5480 38 1 0.4194 -10.8424 -2.4911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006240745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:47 Heat of formation + Delta-G solvation = 18.124003 kcal Electronic energy + Delta-G solvation = -28348.818339 eV Core-core repulsion = 24092.359011 eV Total energy + Delta-G solvation = -4256.459328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 360.072 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.96022 -40.49227 -39.11782 -38.25783 -37.85406 -35.90340 -35.60635 -33.10142 -32.51667 -31.35103 -30.57387 -29.68858 -27.07638 -26.28081 -24.42995 -23.28153 -23.09398 -21.68036 -20.20282 -20.06321 -19.75162 -18.73207 -18.04006 -17.90213 -17.10716 -16.67980 -16.55844 -16.33203 -15.80259 -15.63262 -15.23360 -14.89475 -14.67789 -14.44161 -14.08272 -13.85638 -13.78892 -13.44253 -13.06822 -12.85503 -12.61626 -12.37681 -12.05944 -11.74616 -11.64611 -11.52379 -11.17742 -11.11064 -10.79106 -10.78728 -10.73191 -10.43427 -9.93909 -9.43972 -9.31507 -9.12134 -8.72581 -8.09496 -7.95766 -7.94462 -6.51223 -5.06384 -0.38388 0.71250 1.02430 1.05636 1.39911 1.54357 1.77303 1.84641 2.47133 2.77031 2.98397 3.04744 3.10375 3.35987 3.37756 3.83755 3.95309 4.32878 4.44637 4.51873 4.53107 4.59454 4.61182 4.75205 5.02947 5.13887 5.16216 5.43270 5.59474 5.60630 5.60845 5.67305 5.95365 6.00642 6.10913 6.13090 6.18019 6.50864 6.71599 6.93206 7.11576 7.59966 7.86629 8.31522 8.65863 9.06732 10.27081 10.46025 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.002321 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.736710 B =12062.228453 C =13108.106962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.087 3.913 3 Si 0.920 3.080 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.074 0.926 9 C 0.555 3.445 10 O -0.546 6.546 11 N -0.578 5.578 12 N -0.151 5.151 13 C -0.025 4.025 14 C -0.075 4.075 15 H 0.173 0.827 16 C 0.532 3.468 17 O -0.431 6.431 18 N -0.620 5.620 19 C 0.541 3.459 20 S -0.500 6.500 21 N -0.477 5.477 22 C 0.116 3.884 23 C -0.079 4.079 24 C -0.109 4.109 25 C -0.098 4.098 26 C -0.109 4.109 27 C -0.080 4.080 28 C 0.530 3.470 29 O -0.419 6.419 30 H 0.276 0.724 31 H 0.374 0.626 32 H 0.112 0.888 33 H 0.446 0.554 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 -21.914 -5.087 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.137 4.137 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.363 3.637 10 O -0.424 6.424 11 N -0.326 5.326 12 N 0.039 4.961 13 C -0.238 4.238 14 C -0.102 4.102 15 H 0.190 0.810 16 C 0.313 3.687 17 O -0.296 6.296 18 N -0.271 5.271 19 C 0.196 3.804 20 S -0.364 6.364 21 N -0.198 5.198 22 C 0.028 3.972 23 C -0.099 4.099 24 C -0.127 4.127 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.099 4.099 28 C 0.312 3.688 29 O -0.282 6.282 30 H 0.087 0.913 31 H 0.210 0.790 32 H 0.129 0.871 33 H 0.292 0.708 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.516 -21.295 -5.193 22.603 hybrid contribution 1.508 1.161 0.540 1.978 sum 7.024 -20.135 -4.652 21.826 Atomic orbital electron populations 1.70008 1.07370 1.28206 1.31597 1.25782 0.94750 1.00776 0.92393 0.86114 0.80381 0.80596 0.78596 1.18476 1.19747 1.19743 1.19957 0.94453 0.89066 1.53489 0.90808 1.17208 0.87911 0.80172 0.78369 1.90690 1.13473 1.84786 1.53420 1.48298 1.07648 1.00839 1.75829 1.73673 1.29328 0.93427 0.99704 1.23861 0.96382 0.90231 1.13373 1.20687 1.07446 0.94067 0.87968 0.81012 1.20979 0.76062 0.80258 0.91355 1.90925 1.45883 1.64683 1.28096 1.44337 1.56236 1.18243 1.08272 1.22197 0.82607 0.94304 0.81297 1.93701 1.49657 0.99017 1.94061 1.43567 1.54813 1.16737 1.04711 1.17234 0.95850 0.98001 0.86110 1.21030 0.94305 0.98716 0.95827 1.20998 0.99963 0.96585 0.95169 1.21304 0.93333 0.97495 0.99528 1.20988 0.97238 0.99372 0.95169 1.21014 0.98506 0.94612 0.95816 1.21032 0.76426 0.79689 0.91629 1.90890 1.44993 1.64353 1.28004 0.91340 0.79028 0.87071 0.70785 0.85590 0.84985 0.85298 0.85001 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.32 11.73 55.56 0.65 -20.67 16 2 C 0.09 2.29 5.50 -17.34 -0.10 2.19 16 3 Si 0.92 18.88 29.56 -169.99 -5.02 13.86 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.53 -14.28 9.31 -37.51 -0.35 -14.63 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.55 15.61 7.69 -14.92 -0.11 15.50 16 10 O -0.55 -17.73 15.22 5.11 0.08 -17.65 16 11 N -0.58 -13.17 6.24 29.13 0.18 -12.99 16 12 N -0.15 -3.17 10.90 32.68 0.36 -2.81 16 13 C -0.02 -0.38 9.25 -13.86 -0.13 -0.51 16 14 C -0.07 -0.91 3.01 -93.09 -0.28 -1.19 16 15 H 0.17 2.07 8.06 -51.93 -0.42 1.65 16 16 C 0.53 5.74 7.42 -10.39 -0.08 5.66 16 17 O -0.43 -5.99 17.83 5.58 0.10 -5.89 16 18 N -0.62 -5.21 5.12 -13.00 -0.07 -5.28 16 19 C 0.54 5.24 7.60 -88.68 -0.67 4.56 16 20 S -0.50 -5.77 28.88 -107.50 -3.10 -8.88 16 21 N -0.48 -4.95 2.58 -61.32 -0.16 -5.11 16 22 C 0.12 1.21 2.74 -83.61 -0.23 0.98 16 23 C -0.08 -0.76 9.92 -39.40 -0.39 -1.15 16 24 C -0.11 -0.84 10.04 -39.61 -0.40 -1.24 16 25 C -0.10 -0.69 10.04 -39.55 -0.40 -1.09 16 26 C -0.11 -0.83 10.04 -39.61 -0.40 -1.22 16 27 C -0.08 -0.74 9.92 -39.40 -0.39 -1.13 16 28 C 0.53 6.35 7.04 -10.56 -0.07 6.27 16 29 O -0.42 -6.33 16.97 5.58 0.09 -6.24 16 30 H 0.28 7.04 8.29 -40.82 -0.34 6.70 16 31 H 0.37 7.06 8.59 -182.60 -1.57 5.49 16 32 H 0.11 1.43 8.00 -52.49 -0.42 1.01 16 33 H 0.45 2.94 8.60 -40.82 -0.35 2.58 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -37.44 365.56 -9.80 -47.23 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.42 Total: 5.90 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -4.00 Total: 13.01 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.97 Total: -46.85 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: 0.27 Total: -29.78 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Atomic # 16 Polarization: -5.77 SS G_CDS: -3.10 Total: -8.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.44 -9.80 -47.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006240745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.359 kcal (2) G-P(sol) polarization free energy of solvation -37.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds