Wall clock time and date at job start Tue Mar 31 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30611 * 1 3 3 Si 1.86793 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47434 * 240.00319 * 3 2 1 5 5 H 1.48503 * 109.47558 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47039 * 120.00367 * 3 2 1 7 7 C 1.40208 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.40685 * 119.99905 * 359.97438 * 7 2 1 10 10 O 1.21970 * 120.00039 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99512 * 179.97438 * 9 7 2 12 12 N 1.40105 * 119.99940 * 179.97438 * 11 9 7 13 13 C 1.30696 * 120.00166 * 180.02562 * 12 11 9 14 14 C 1.46736 * 119.99784 * 180.02562 * 13 12 11 15 15 C 1.40261 * 120.12294 * 179.97438 * 14 13 12 16 16 C 1.36595 * 119.86825 * 179.97438 * 15 14 13 17 17 C 1.39199 * 120.12901 * 359.97438 * 16 15 14 18 18 O 1.35684 * 119.87040 * 179.97438 * 17 16 15 19 19 C 1.42903 * 116.99966 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.47440 * 180.02562 * 19 18 17 21 21 O 1.21285 * 119.99658 * 0.02562 * 20 19 18 22 22 N 1.34770 * 119.99958 * 180.02562 * 20 19 18 23 23 C 1.46922 * 120.63515 * 359.71339 * 22 20 19 24 24 C 1.53625 * 108.54254 * 126.36849 * 23 22 20 25 25 C 1.53043 * 109.23843 * 54.86044 * 24 23 22 26 26 C 1.53033 * 109.54061 * 298.51188 * 25 24 23 27 27 C 1.46928 * 120.62937 * 180.02562 * 22 20 19 28 28 C 1.39202 * 120.25433 * 0.02562 * 17 16 15 29 29 C 1.36587 * 120.12858 * 359.97438 * 28 17 16 30 30 H 0.97003 * 119.99525 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00161 * 359.97438 * 11 9 7 32 32 H 1.08001 * 120.00130 * 359.97438 * 13 12 11 33 33 H 1.07996 * 120.06640 * 0.02562 * 15 14 13 34 34 H 1.08008 * 119.93387 * 179.72705 * 16 15 14 35 35 H 1.09000 * 109.47165 * 300.00703 * 19 18 17 36 36 H 1.09001 * 109.46981 * 59.99944 * 19 18 17 37 37 H 1.08998 * 109.59355 * 246.21036 * 23 22 20 38 38 H 1.09005 * 109.58551 * 6.63311 * 23 22 20 39 39 H 1.08997 * 109.63774 * 294.87352 * 24 23 22 40 40 H 1.09000 * 109.45557 * 174.74270 * 24 23 22 41 41 H 1.08997 * 109.45948 * 178.48659 * 25 24 23 42 42 H 1.09006 * 109.46011 * 58.53065 * 25 24 23 43 43 H 1.09004 * 109.49349 * 301.41318 * 26 25 24 44 44 H 1.08997 * 109.50147 * 181.31481 * 26 25 24 45 45 H 1.09010 * 109.58739 * 353.36499 * 27 22 20 46 46 H 1.08990 * 109.59170 * 113.79127 * 27 22 20 47 47 H 1.07999 * 119.93471 * 179.97438 * 28 17 16 48 48 H 1.08004 * 120.06633 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0938 1.6964 -1.2125 5 1 1.2751 2.7465 0.0006 6 1 3.0939 1.6963 1.2124 7 6 2.0071 -1.2143 -0.0005 8 1 3.0870 -1.2142 -0.0010 9 6 1.3036 -2.4326 -0.0005 10 8 0.0839 -2.4325 -0.0005 11 7 1.9775 -3.5997 -0.0016 12 7 1.2770 -4.8131 -0.0010 13 6 1.9305 -5.9450 -0.0016 14 6 1.1967 -7.2157 -0.0016 15 6 1.8954 -8.4319 -0.0026 16 6 1.2071 -9.6118 -0.0021 17 6 -0.1849 -9.6087 0.0001 18 8 -0.8633 -10.7837 0.0001 19 6 -2.2904 -10.7090 0.0018 20 6 -2.8664 -12.1015 0.0021 21 8 -2.1276 -13.0634 0.0015 22 7 -4.2025 -12.2781 0.0031 23 6 -5.1103 -11.1229 0.0102 24 6 -6.0929 -11.2665 -1.1619 25 6 -6.7990 -12.6208 -1.0650 26 6 -5.7654 -13.7451 -1.1628 27 6 -4.7791 -13.6295 0.0041 28 6 -0.8836 -8.4047 0.0011 29 6 -0.2059 -7.2188 0.0006 30 1 -0.4849 0.8401 0.0004 31 1 2.9475 -3.5997 -0.0027 32 1 3.0105 -5.9450 -0.0028 33 1 2.9753 -8.4355 -0.0031 34 1 1.7440 -10.5490 -0.0074 35 1 -2.6253 -10.1773 0.8924 36 1 -2.6273 -10.1762 -0.8875 37 1 -5.6605 -11.0961 0.9508 38 1 -4.5342 -10.2047 -0.1046 39 1 -5.5496 -11.2062 -2.1049 40 1 -6.8321 -10.4667 -1.1161 41 1 -7.5167 -12.7153 -1.8799 42 1 -7.3219 -12.6903 -0.1110 43 1 -5.2251 -13.6614 -2.1059 44 1 -6.2713 -14.7095 -1.1172 45 1 -3.9842 -14.3660 -0.1149 46 1 -5.3028 -13.8027 0.9441 47 1 -1.9635 -8.4083 0.0024 48 1 -0.7490 -6.2852 0.0019 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006241402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:38 Heat of formation + Delta-G solvation = -43.175320 kcal Electronic energy + Delta-G solvation = -29915.271519 eV Core-core repulsion = 25550.493282 eV Total energy + Delta-G solvation = -4364.778237 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.86473 -39.88484 -38.07856 -37.62663 -37.16473 -35.02644 -33.52748 -32.68408 -31.88764 -31.47574 -31.11477 -29.49257 -28.29073 -26.46177 -25.62889 -23.78434 -23.38639 -22.60384 -21.36537 -20.63657 -19.67344 -19.45186 -18.60503 -17.64421 -17.30165 -16.69581 -16.64622 -16.12514 -15.65464 -15.33215 -15.21730 -15.10529 -14.96044 -14.54905 -14.28083 -14.13254 -13.86486 -13.77501 -13.50005 -13.32407 -13.28222 -12.88463 -12.74490 -12.65302 -12.63626 -11.85362 -11.83379 -11.65622 -11.50299 -11.42926 -11.25825 -11.17065 -11.10925 -10.83563 -10.66425 -10.65375 -10.42696 -10.10045 -9.50712 -9.15766 -9.05131 -9.01773 -8.45428 -7.79123 -7.14773 -6.41981 -4.97393 1.11692 1.51732 2.12560 2.16136 2.85211 3.06084 3.09309 3.11617 3.19521 3.71365 3.97466 4.04637 4.08130 4.17067 4.31723 4.38021 4.43041 4.52052 4.57794 4.68505 4.73779 4.86508 4.87509 4.93288 4.97426 5.15723 5.20381 5.26559 5.30565 5.37456 5.41039 5.46090 5.51557 5.56503 5.71180 5.74292 5.78333 5.85873 5.99695 6.13112 6.33154 6.40530 6.62261 6.72190 6.85005 6.87947 7.18596 7.31761 7.71291 7.81780 7.96588 8.66534 8.74210 9.27819 10.36981 10.62329 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.001514 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.872729 B =18491.992814 C =20135.281020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.088 3.912 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.558 3.442 10 O -0.555 6.555 11 N -0.589 5.589 12 N -0.191 5.191 13 C 0.020 3.980 14 C -0.054 4.054 15 C -0.068 4.068 16 C -0.147 4.147 17 C 0.119 3.881 18 O -0.292 6.292 19 C 0.042 3.958 20 C 0.520 3.480 21 O -0.517 6.517 22 N -0.612 5.612 23 C 0.102 3.898 24 C -0.137 4.137 25 C -0.121 4.121 26 C -0.136 4.136 27 C 0.112 3.888 28 C -0.208 4.208 29 C -0.051 4.051 30 H 0.275 0.725 31 H 0.369 0.631 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.125 0.875 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -24.274 -0.783 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.367 3.633 10 O -0.434 6.434 11 N -0.335 5.335 12 N -0.001 5.001 13 C -0.189 4.189 14 C -0.057 4.057 15 C -0.088 4.088 16 C -0.165 4.165 17 C 0.073 3.927 18 O -0.204 6.204 19 C -0.036 4.036 20 C 0.307 3.693 21 O -0.391 6.391 22 N -0.348 5.348 23 C -0.021 4.021 24 C -0.176 4.176 25 C -0.159 4.159 26 C -0.174 4.174 27 C -0.010 4.010 28 C -0.227 4.227 29 C -0.071 4.071 30 H 0.086 0.914 31 H 0.204 0.796 32 H 0.124 0.876 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.088 0.912 47 H 0.143 0.857 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.116 -24.220 -0.780 26.660 hybrid contribution 1.563 0.844 -0.016 1.777 sum -9.553 -23.376 -0.796 25.265 Atomic orbital electron populations 1.70006 1.07359 1.28156 1.31661 1.25767 0.94689 1.00682 0.92412 0.86264 0.79794 0.80078 0.79734 1.18973 1.20232 1.18977 1.19722 0.94454 0.89659 1.53531 0.91118 1.16778 0.87849 0.80352 0.78357 1.90715 1.13424 1.85327 1.53953 1.48069 1.07407 1.01849 1.76132 1.74793 1.27891 0.92910 1.04463 1.23891 0.96593 0.90708 1.07712 1.18495 0.92757 0.91082 1.03319 1.20797 0.99765 0.90410 0.97852 1.19996 0.90481 0.99041 1.07004 1.19260 0.91875 0.83872 0.97728 1.86055 1.17145 1.28368 1.88876 1.22467 0.81612 0.95635 1.03925 1.20103 0.81984 0.90660 0.76544 1.90743 1.58297 1.42098 1.47974 1.48004 1.04804 1.07820 1.74203 1.21958 0.92459 0.88218 0.99482 1.22012 0.98637 0.98248 0.98658 1.21525 0.97685 0.94213 1.02444 1.21936 0.97153 0.99290 0.98994 1.21631 0.97244 0.83636 0.98450 1.20922 0.99960 0.92054 1.09738 1.21123 0.93621 0.98137 0.94247 0.91418 0.79558 0.87641 0.84973 0.85103 0.88859 0.88868 0.90567 0.89572 0.91172 0.90214 0.91442 0.91591 0.91370 0.90523 0.88782 0.91248 0.85722 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.60 11.71 55.56 0.65 -20.95 16 2 C 0.09 2.37 5.50 -17.33 -0.10 2.28 16 3 Si 0.92 19.18 29.56 -169.99 -5.02 14.16 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.54 -14.77 9.26 -37.92 -0.35 -15.12 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.56 16.14 7.65 -15.34 -0.12 16.02 16 10 O -0.55 -18.36 15.20 4.95 0.08 -18.28 16 11 N -0.59 -14.01 6.26 28.92 0.18 -13.83 16 12 N -0.19 -4.24 10.19 32.13 0.33 -3.91 16 13 C 0.02 0.34 10.75 -14.60 -0.16 0.18 16 14 C -0.05 -0.83 5.88 -104.94 -0.62 -1.44 16 15 C -0.07 -0.84 9.76 -39.42 -0.38 -1.22 16 16 C -0.15 -1.82 9.93 -39.82 -0.40 -2.21 16 17 C 0.12 1.54 6.71 -38.87 -0.26 1.28 16 18 O -0.29 -3.80 9.66 -38.66 -0.37 -4.17 16 19 C 0.04 0.40 3.56 36.01 0.13 0.53 16 20 C 0.52 5.54 7.78 -10.99 -0.09 5.46 16 21 O -0.52 -7.66 15.91 -14.36 -0.23 -7.89 16 22 N -0.61 -4.61 2.97 -172.48 -0.51 -5.12 16 23 C 0.10 0.49 6.37 -3.49 -0.02 0.46 16 24 C -0.14 -0.58 6.10 -26.38 -0.16 -0.74 16 25 C -0.12 -0.49 5.88 -26.69 -0.16 -0.65 16 26 C -0.14 -0.67 6.08 -26.59 -0.16 -0.83 16 27 C 0.11 0.74 6.43 -3.69 -0.02 0.71 16 28 C -0.21 -2.66 8.97 -39.82 -0.36 -3.02 16 29 C -0.05 -0.78 9.54 -39.42 -0.38 -1.16 16 30 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 31 H 0.37 7.37 8.61 -182.60 -1.57 5.80 16 32 H 0.11 1.50 8.03 -52.49 -0.42 1.08 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 35 H 0.09 0.69 7.44 -51.93 -0.39 0.30 16 36 H 0.09 0.69 7.21 -51.93 -0.37 0.32 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.33 5.93 -51.93 -0.31 0.03 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.09 0.78 7.01 -51.92 -0.36 0.42 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.12 1.24 6.27 -52.49 -0.33 0.91 16 48 H 0.14 2.42 7.55 -52.48 -0.40 2.03 16 LS Contribution 404.35 15.07 6.09 6.09 Total: -1.00 -38.32 404.35 -10.33 -48.65 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.93 Total: 4.72 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -3.59 Total: 0.54 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.65 Total: -43.82 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.53 Total: -30.34 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -38.32 -10.33 -48.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006241402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.475 kcal (2) G-P(sol) polarization free energy of solvation -38.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds