Wall clock time and date at job start Tue Mar 31 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30611 * 1 3 3 Si 1.86793 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47434 * 240.00319 * 3 2 1 5 5 H 1.48503 * 109.47558 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47039 * 120.00367 * 3 2 1 7 7 C 1.40208 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.40685 * 119.99905 * 359.97438 * 7 2 1 10 10 O 1.21970 * 120.00039 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99512 * 179.97438 * 9 7 2 12 12 N 1.40105 * 119.99940 * 179.97438 * 11 9 7 13 13 C 1.30696 * 120.00166 * 180.02562 * 12 11 9 14 14 C 1.46736 * 119.99784 * 180.02562 * 13 12 11 15 15 C 1.40261 * 120.12294 * 179.97438 * 14 13 12 16 16 C 1.36595 * 119.86825 * 179.97438 * 15 14 13 17 17 C 1.39199 * 120.12901 * 359.97438 * 16 15 14 18 18 O 1.35684 * 119.87040 * 179.97438 * 17 16 15 19 19 C 1.42903 * 116.99966 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.47440 * 180.02562 * 19 18 17 21 21 O 1.21285 * 119.99658 * 0.02562 * 20 19 18 22 22 N 1.34770 * 119.99958 * 180.02562 * 20 19 18 23 23 C 1.46922 * 120.63515 * 359.71339 * 22 20 19 24 24 C 1.53625 * 108.54254 * 126.36849 * 23 22 20 25 25 C 1.53043 * 109.23843 * 54.86044 * 24 23 22 26 26 C 1.53033 * 109.54061 * 298.51188 * 25 24 23 27 27 C 1.46928 * 120.62937 * 180.02562 * 22 20 19 28 28 C 1.39202 * 120.25433 * 0.02562 * 17 16 15 29 29 C 1.36587 * 120.12858 * 359.97438 * 28 17 16 30 30 H 0.97003 * 119.99525 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00161 * 359.97438 * 11 9 7 32 32 H 1.08001 * 120.00130 * 359.97438 * 13 12 11 33 33 H 1.07996 * 120.06640 * 0.02562 * 15 14 13 34 34 H 1.08008 * 119.93387 * 179.72705 * 16 15 14 35 35 H 1.09000 * 109.47165 * 300.00703 * 19 18 17 36 36 H 1.09001 * 109.46981 * 59.99944 * 19 18 17 37 37 H 1.08998 * 109.59355 * 246.21036 * 23 22 20 38 38 H 1.09005 * 109.58551 * 6.63311 * 23 22 20 39 39 H 1.08997 * 109.63774 * 294.87352 * 24 23 22 40 40 H 1.09000 * 109.45557 * 174.74270 * 24 23 22 41 41 H 1.08997 * 109.45948 * 178.48659 * 25 24 23 42 42 H 1.09006 * 109.46011 * 58.53065 * 25 24 23 43 43 H 1.09004 * 109.49349 * 301.41318 * 26 25 24 44 44 H 1.08997 * 109.50147 * 181.31481 * 26 25 24 45 45 H 1.09010 * 109.58739 * 353.36499 * 27 22 20 46 46 H 1.08990 * 109.59170 * 113.79127 * 27 22 20 47 47 H 1.07999 * 119.93471 * 179.97438 * 28 17 16 48 48 H 1.08004 * 120.06633 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0938 1.6964 -1.2125 5 1 1.2751 2.7465 0.0006 6 1 3.0939 1.6963 1.2124 7 6 2.0071 -1.2143 -0.0005 8 1 3.0870 -1.2142 -0.0010 9 6 1.3036 -2.4326 -0.0005 10 8 0.0839 -2.4325 -0.0005 11 7 1.9775 -3.5997 -0.0016 12 7 1.2770 -4.8131 -0.0010 13 6 1.9305 -5.9450 -0.0016 14 6 1.1967 -7.2157 -0.0016 15 6 1.8954 -8.4319 -0.0026 16 6 1.2071 -9.6118 -0.0021 17 6 -0.1849 -9.6087 0.0001 18 8 -0.8633 -10.7837 0.0001 19 6 -2.2904 -10.7090 0.0018 20 6 -2.8664 -12.1015 0.0021 21 8 -2.1276 -13.0634 0.0015 22 7 -4.2025 -12.2781 0.0031 23 6 -5.1103 -11.1229 0.0102 24 6 -6.0929 -11.2665 -1.1619 25 6 -6.7990 -12.6208 -1.0650 26 6 -5.7654 -13.7451 -1.1628 27 6 -4.7791 -13.6295 0.0041 28 6 -0.8836 -8.4047 0.0011 29 6 -0.2059 -7.2188 0.0006 30 1 -0.4849 0.8401 0.0004 31 1 2.9475 -3.5997 -0.0027 32 1 3.0105 -5.9450 -0.0028 33 1 2.9753 -8.4355 -0.0031 34 1 1.7440 -10.5490 -0.0074 35 1 -2.6253 -10.1773 0.8924 36 1 -2.6273 -10.1762 -0.8875 37 1 -5.6605 -11.0961 0.9508 38 1 -4.5342 -10.2047 -0.1046 39 1 -5.5496 -11.2062 -2.1049 40 1 -6.8321 -10.4667 -1.1161 41 1 -7.5167 -12.7153 -1.8799 42 1 -7.3219 -12.6903 -0.1110 43 1 -5.2251 -13.6614 -2.1059 44 1 -6.2713 -14.7095 -1.1172 45 1 -3.9842 -14.3660 -0.1149 46 1 -5.3028 -13.8027 0.9441 47 1 -1.9635 -8.4083 0.0024 48 1 -0.7490 -6.2852 0.0019 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006241402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:37 Heat of formation + Delta-G solvation = -69.116011 kcal Electronic energy + Delta-G solvation = -29916.396392 eV Core-core repulsion = 25550.493282 eV Total energy + Delta-G solvation = -4365.903110 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.68187 -40.78433 -39.60669 -38.81642 -38.16216 -36.70835 -34.71216 -34.11316 -33.13017 -32.32284 -32.13835 -30.69725 -29.42083 -28.26938 -26.19082 -24.74210 -24.23152 -23.57930 -22.37733 -21.79571 -21.27879 -20.06516 -19.58326 -19.39241 -18.18092 -17.76102 -17.62065 -17.48802 -17.27299 -16.46123 -16.11535 -15.90487 -15.79461 -15.44019 -15.21384 -15.17259 -14.98299 -14.78539 -14.67317 -14.48321 -14.33340 -14.11806 -13.78104 -13.66701 -13.30934 -13.29061 -13.04596 -12.96201 -12.70051 -12.66635 -12.25272 -12.06762 -12.01049 -11.91205 -11.87606 -11.66452 -11.52057 -10.97979 -10.97674 -10.88742 -10.07578 -9.98052 -9.93372 -9.77018 -8.64775 -8.41860 -7.08814 -0.06930 0.46659 1.35955 1.39831 1.39855 1.41241 1.56591 1.58040 2.08385 2.36851 2.42901 2.43298 2.93405 3.27727 3.65638 3.73409 3.80730 3.84698 3.92306 3.93252 3.97351 4.00129 4.02963 4.09177 4.32547 4.33419 4.39932 4.45982 4.58547 4.63312 4.66058 4.78499 4.87646 4.89809 4.99204 5.02967 5.14042 5.15364 5.19668 5.21306 5.27236 5.42535 5.43511 5.46552 5.66239 5.70610 5.82073 6.03646 6.15990 6.34065 6.68361 6.95639 6.96801 7.46953 8.41994 8.59737 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.001514 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.872729 B =18491.992814 C =20135.281020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.031 3.969 3 Si 1.009 2.991 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.564 4.564 8 H 0.095 0.905 9 C 0.544 3.456 10 O -0.616 6.616 11 N -0.596 5.596 12 N -0.267 5.267 13 C 0.071 3.929 14 C -0.092 4.092 15 C -0.042 4.042 16 C -0.154 4.154 17 C 0.129 3.871 18 O -0.309 6.309 19 C 0.036 3.964 20 C 0.515 3.485 21 O -0.570 6.570 22 N -0.604 5.604 23 C 0.094 3.906 24 C -0.136 4.136 25 C -0.120 4.120 26 C -0.130 4.130 27 C 0.107 3.893 28 C -0.208 4.208 29 C -0.062 4.062 30 H 0.281 0.719 31 H 0.384 0.616 32 H 0.141 0.859 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.151 0.849 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 -25.007 -0.623 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.188 4.188 3 Si 0.827 3.173 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.600 4.600 8 H 0.113 0.887 9 C 0.354 3.646 10 O -0.502 6.502 11 N -0.341 5.341 12 N -0.074 5.074 13 C -0.139 4.139 14 C -0.094 4.094 15 C -0.062 4.062 16 C -0.172 4.172 17 C 0.082 3.918 18 O -0.222 6.222 19 C -0.042 4.042 20 C 0.303 3.697 21 O -0.449 6.449 22 N -0.339 5.339 23 C -0.028 4.028 24 C -0.174 4.174 25 C -0.157 4.157 26 C -0.168 4.168 27 C -0.014 4.014 28 C -0.226 4.226 29 C -0.083 4.083 30 H 0.092 0.908 31 H 0.222 0.778 32 H 0.158 0.842 33 H 0.185 0.815 34 H 0.169 0.831 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.168 0.832 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.334 -24.994 -0.623 27.054 hybrid contribution 1.233 0.608 -0.065 1.376 sum -9.101 -24.387 -0.688 26.039 Atomic orbital electron populations 1.70177 1.09939 1.29827 1.32865 1.27142 0.95553 1.05318 0.90808 0.84902 0.78149 0.73657 0.80578 1.17492 1.19518 1.17497 1.20297 0.95799 0.90101 1.53767 0.88685 1.17164 0.87395 0.82225 0.77820 1.90646 1.15794 1.86817 1.56931 1.47288 1.07718 1.01853 1.77267 1.74897 1.28873 0.93293 1.10350 1.24594 0.98545 0.90091 1.00635 1.18627 0.92861 0.91255 1.06707 1.21078 1.01362 0.88852 0.94939 1.20342 0.90516 0.99905 1.06449 1.19459 0.92413 0.83852 0.96078 1.86049 1.19161 1.28375 1.88572 1.22754 0.79869 0.95423 1.06108 1.20389 0.82715 0.90544 0.76068 1.90717 1.59709 1.43560 1.50916 1.48134 1.04243 1.09122 1.72355 1.22249 0.92378 0.87484 1.00656 1.22019 0.98695 0.98937 0.97792 1.21536 0.97393 0.93522 1.03262 1.21899 0.96915 1.00632 0.97387 1.21743 0.96925 0.82754 1.00019 1.21060 1.01345 0.91021 1.09177 1.21039 0.94149 0.97959 0.95152 0.90824 0.77843 0.84171 0.81491 0.83107 0.86431 0.86639 0.88873 0.88445 0.92211 0.88691 0.90821 0.90579 0.92835 0.89168 0.91093 0.89638 0.83155 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.27 11.71 21.86 0.26 -48.02 16 2 C 0.03 1.66 5.50 85.35 0.47 2.13 16 3 Si 1.01 39.21 29.56 68.60 2.03 41.24 16 4 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.56 -31.71 9.26 23.35 0.22 -31.50 16 8 H 0.10 4.65 7.85 -2.91 -0.02 4.63 16 9 C 0.54 32.99 7.65 84.84 0.65 33.64 16 10 O -0.62 -43.38 15.20 -5.22 -0.08 -43.46 16 11 N -0.60 -29.33 6.26 -180.52 -1.13 -30.46 16 12 N -0.27 -12.25 10.19 -52.26 -0.53 -12.78 16 13 C 0.07 2.37 10.75 87.08 0.94 3.31 16 14 C -0.09 -2.69 5.88 -20.07 -0.12 -2.80 16 15 C -0.04 -0.91 9.76 22.38 0.22 -0.69 16 16 C -0.15 -3.36 9.93 22.12 0.22 -3.14 16 17 C 0.13 3.07 6.71 22.73 0.15 3.22 16 18 O -0.31 -7.49 9.66 -70.99 -0.69 -8.18 16 19 C 0.04 0.61 3.56 71.24 0.25 0.87 16 20 C 0.51 10.63 7.78 87.66 0.68 11.31 16 21 O -0.57 -17.21 15.91 15.99 0.25 -16.96 16 22 N -0.60 -8.40 2.97 -817.99 -2.43 -10.83 16 23 C 0.09 0.68 6.37 86.51 0.55 1.24 16 24 C -0.14 -0.86 6.10 30.82 0.19 -0.68 16 25 C -0.12 -0.72 5.88 30.62 0.18 -0.54 16 26 C -0.13 -1.14 6.08 30.68 0.19 -0.95 16 27 C 0.11 1.34 6.43 86.37 0.56 1.90 16 28 C -0.21 -5.02 8.97 22.12 0.20 -4.82 16 29 C -0.06 -1.92 9.54 22.38 0.21 -1.71 16 30 H 0.28 15.17 8.29 -92.71 -0.77 14.40 16 31 H 0.38 15.56 8.61 -213.32 -1.84 13.72 16 32 H 0.14 3.59 8.03 -2.91 -0.02 3.57 16 33 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.12 1.42 7.44 -2.39 -0.02 1.40 16 36 H 0.12 1.44 7.21 -2.39 -0.02 1.42 16 37 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.10 0.49 5.93 -2.38 -0.01 0.48 16 39 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 43 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 1.24 7.01 -2.38 -0.02 1.22 16 46 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.15 2.70 6.27 -2.91 -0.02 2.68 16 48 H 0.11 4.08 7.55 -2.91 -0.02 4.06 16 Total: -1.00 -90.93 404.35 2.60 -88.34 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.84 Total: 30.33 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.75 Total: 10.79 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -3.83 Total: -102.09 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: -0.51 Total: -68.60 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -90.93 2.60 -88.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006241402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.219 kcal (2) G-P(sol) polarization free energy of solvation -90.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds